Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
alpha-amylase a precursormaker-scaffold522_size146686-snap-gene-0.16gene
alpha- and gamma-adaptin-binding protein p34-likemaker-scaffold5_size1054832-snap-gene-0.13gene
alpha-arabinofuranosidasemaker-scaffold469_size162558-snap-gene-0.25gene
alpha-aspartyl dipeptidasemaker-scaffold36_size508890-snap-gene-4.14gene
alpha betamaker-scaffold744_size103476-snap-gene-0.13gene
alpha beta hydrolasemaker-scaffold1247_size53216-snap-gene-0.0gene
alpha beta hydrolasemaker-scaffold2439_size15723-snap-gene-0.6gene
alpha beta hydrolasemaker-scaffold5646_size4449-snap-gene-0.3gene
alpha beta hydrolasemaker-scaffold708_size108518-snap-gene-0.16gene
alpha-carbonic anhydrasemaker-scaffold346_size200932-snap-gene-1.17gene
alpha-carbonic anhydrasemaker-scaffold573_size133556-snap-gene-0.14gene
alpha-crystallin b chain isoform x2maker-scaffold12_size759060-snap-gene-5.14gene
alpha-( )-fucosyltransferasesnap_masked-scaffold175_size286436-processed-gene-1.29gene
-alpha-glucan branching enzymemaker-scaffold779_size98098-snap-gene-0.19gene
-alpha-glucan branching proteinsnap_masked-scaffold2474_size15334-processed-gene-0.3gene
alpha-glucosidase family partialmaker-scaffold1724_size29877-snap-gene-0.10gene
alpha- -glucosyltransferase alg10-bmaker-scaffold121_size336169-snap-gene-2.34gene
alpha-ketoglutarate partialsnap_masked-scaffold6640_size3701-processed-gene-0.0gene
alpha-mannosidase 2maker-scaffold1216_size55193-snap-gene-0.9gene
alpha- -mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferasesnap_masked-scaffold212_size255419-processed-gene-1.10gene
alpha- -mannosyl-glycoprotein 4-beta-n-acetylglucosaminyltransferase bsnap_masked-scaffold20_size707684-processed-gene-3.2gene
alpha- -mannosyl-glycoprotein 4-beta-n-acetylglucosaminyltransferase cmaker-scaffold613_size124221-snap-gene-0.28gene
alpha- -mannosyltransferase alg9maker-scaffold380_size190731-snap-gene-0.37gene
alpha-methylacyl- racemasesnap_masked-scaffold7547_size3127-processed-gene-0.2gene
Alpha-N-acetylgalactosaminidasemaker-scaffold2190_size19107-snap-gene-0.6gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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