Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
amino acid transportermaker-scaffold878_size85485-snap-gene-0.5gene
aminoglycoside n(3 )-acetyltransferasemaker-scaffold229_size244821-snap-gene-1.18gene
aminomethyltransferase (glycine cleavage system t protein)snap_masked-scaffold2_size2283618-processed-gene-7.32gene
aminopeptidase asnap_masked-scaffold10258_size2233-processed-gene-0.0gene
aminopeptidase asnap_masked-scaffold10764_size2135-processed-gene-0.0gene
aminopeptidase -likemaker-scaffold60_size442463-snap-gene-3.26gene
aminopeptidase -likemaker-scaffold844_size89433-snap-gene-0.15gene
aminopeptidase nmaker-scaffold1168_size57759-snap-gene-0.7gene
aminopeptidase nmaker-scaffold224_size251237-snap-gene-1.39gene
aminopeptidase nmaker-scaffold692_size110616-snap-gene-0.19gene
aminopeptidase nmaker-scaffold990_size72856-snap-gene-0.19gene
aminopeptidase n-likemaker-scaffold197_size267318-snap-gene-1.31gene
aminopeptidase n-likemaker-scaffold22_size673200-snap-gene-5.52gene
aminopeptidase n-likemaker-scaffold359_size197282-snap-gene-0.25gene
aminotransferasesnap_masked-scaffold837_size90405-processed-gene-0.17gene
aminotransferase class iiimaker-scaffold900_size83388-snap-gene-0.1gene
aminotransferase class-iiisnap_masked-scaffold1_size3401120-processed-gene-16.4gene
aminotransferase class vsnap_masked-scaffold2_size2283618-processed-gene-20.2gene
ammonium transporter 1-likemaker-scaffold99_size374999-snap-gene-2.29gene
ammonium transporter rh type b isoform x3maker-scaffold440_size170678-snap-gene-0.26gene
amp-activated protein kinase alpha subunitmaker-scaffold844_size89433-snap-gene-0.13gene
amp-binding domain proteinsnap_masked-scaffold1_size3401120-processed-gene-5.10gene
amp-binding proteinsnap_masked-scaffold3814_size7397-processed-gene-0.1gene
amp deaminase 2maker-scaffold1048_size67263-snap-gene-0.25gene
amp dependent coa ligasemaker-scaffold484_size159454-snap-gene-0.19gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads