Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
ankyrin repeat domain-containing protein 13c isoform x2maker-scaffold314_size210232-snap-gene-1.12gene
ankyrin repeat domain-containing protein 13c-like isoform x2maker-scaffold1649_size32179-snap-gene-0.7gene
ankyrin repeat domain-containing protein 49snap_masked-scaffold886_size84816-processed-gene-0.18gene
ankyrin repeat domain-containing protein 54maker-scaffold1533_size36968-snap-gene-0.10gene
ankyrin repeat domain-containing protein 6maker-scaffold28_size608977-snap-gene-0.13gene
ankyrin repeat domain-containing protein 6maker-scaffold88_size394946-snap-gene-2.31gene
ankyrin repeat domain-containing protein 6-likemaker-scaffold88_size394946-snap-gene-2.30gene
ankyrin repeat domain-containing protein partialsnap_masked-scaffold417_size177606-processed-gene-0.9gene
ankyrin repeat domain-containing protein sowahd- partialmaker-scaffold294_size218657-snap-gene-1.28gene
ankyrin repeat proteinmaker-scaffold105_size367834-snap-gene-2.31gene
ankyrin repeat proteinmaker-scaffold245_size240363-snap-gene-1.27gene
ankyrin repeat proteinmaker-scaffold313_size211302-snap-gene-1.20gene
ankyrin repeat proteinmaker-scaffold405_size181423-snap-gene-0.39gene
ankyrin repeat protein partialmaker-scaffold578_size132436-snap-gene-0.38gene
annexin a13maker-scaffold259_size234575-snap-gene-1.17gene
Anoctamin-10snap_masked-scaffold268_size230776-processed-gene-1.19gene
anoctamin-5 isoform x2maker-scaffold1022_size69981-snap-gene-0.8gene
antho-rfamide neuropeptidemaker-scaffold12_size759060-snap-gene-4.15gene
anthranilate phosphoribosyltransferasemaker-scaffold546_size140615-snap-gene-0.27gene
anthranilate synthase component imaker-scaffold184_size276635-snap-gene-1.41gene
antibacterial peptide pbsipmaker-scaffold47_size466558-snap-gene-3.35gene
antigen 5 scp domain-containingmaker-scaffold334_size202906-snap-gene-1.26gene
antigenic determinant of reca protein homologsnap_masked-scaffold188_size271682-processed-gene-1.13gene
antigen ki-67-like isoform x1maker-scaffold199_size265817-snap-gene-1.37gene
antioxidant proteinsnap_masked-scaffold8704_size2636-processed-gene-0.0gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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