Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
Aquaporin-12Amaker-scaffold352_size199037-snap-gene-0.45gene
Aquaporin-3maker-scaffold58_size443543-snap-gene-2.10gene
Aquaporin AQPAe.a snap_masked-scaffold294_size218657-processed-gene-1.4gene
archaeal flagella assembly protein jmaker-scaffold730_size105374-snap-gene-0.19gene
Arfaptin-2snap_masked-scaffold364_size194629-processed-gene-0.14gene
arf-gap with sh3 ank repeat and ph domain-containing protein 1maker-scaffold1490_size38656-snap-gene-0.8gene
Arginasemaker-scaffold310_size212938-snap-gene-0.9gene
arginine-glutamic acid dipeptide repeatsmaker-scaffold169_size292178-snap-gene-1.30gene
arginine-glutamic acid dipeptide repeats proteinmaker-scaffold1269_size51662-snap-gene-0.15gene
arginine-glutamic acid dipeptide repeats proteinmaker-scaffold907_size82601-snap-gene-0.22gene
arginine kinasemaker-scaffold645_size120276-snap-gene-0.38gene
arginine kinase 1maker-scaffold232_size243569-snap-gene-1.21gene
arginine n-methyltransferase 1maker-scaffold214_size254108-snap-gene-0.15gene
arginine serine-rich splicing factor 4 isoform 1maker-scaffold157_size297442-snap-gene-1.28gene
argininosuccinate lyasesnap_masked-scaffold10668_size2154-processed-gene-0.0gene
argininosuccinate lyasesnap_masked-scaffold1_size3401120-processed-gene-2.30gene
argininosuccinate synthasesnap_masked-scaffold2_size2283618-processed-gene-4.14gene
argininosuccinate synthasesnap_masked-scaffold358_size197577-processed-gene-0.24gene
arginyl-trna synthetasemaker-scaffold294_size218657-snap-gene-1.25gene
argonaute 3 proteinmaker-scaffold1289_size50518-snap-gene-0.8gene
argonaute partialsnap_masked-scaffold1253_size52701-processed-gene-0.8gene
ariadne-1-like proteinmaker-scaffold91_size383040-snap-gene-1.21gene
aristalesssnap_masked-scaffold5_size1054832-processed-gene-9.0gene
arm-1 protein variant 1maker-scaffold383_size189472-snap-gene-0.29gene
armadillo repeat-containing protein 10-like isoform x3maker-scaffold160_size295910-snap-gene-1.38gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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