EMLSAG00000000003, EMLSAG00000000003-682769 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000003 vs. GO
Match: - (symbol:Sema-1a "Sema-1a" species:7227 "Drosophila melanogaster" [GO:0016021 "integral component of membrane" evidence=ISS;NAS] [GO:0007411 "axon guidance" evidence=ISS;IDA;IMP;NAS] [GO:0005886 "plasma membrane" evidence=ISS;IDA] [GO:0007416 "synapse assembly" evidence=IMP] [GO:0030215 "semaphorin receptor binding" evidence=TAS] [GO:0004872 "receptor activity" evidence=IEA] [GO:0016199 "axon midline choice point recognition" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI] [GO:0008039 "synaptic target recognition" evidence=IMP] [GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP] [GO:0001964 "startle response" evidence=IMP] [GO:0048854 "brain morphogenesis" evidence=IMP] [GO:2000305 "semaphorin-plexin signaling pathway involved in regulation of photoreceptor cell axon guidance" evidence=IGI] [GO:0008201 "heparin binding" evidence=IDA] [GO:0008045 "motor neuron axon guidance" evidence=IMP] [GO:0045792 "negative regulation of cell size" evidence=IMP] InterPro:IPR001627 InterPro:IPR002165 InterPro:IPR015943 InterPro:IPR016201 Pfam:PF01403 Pfam:PF01437 PROSITE:PS51004 SMART:SM00423 SMART:SM00630 GO:GO:0016021 GO:GO:0005886 EMBL:AE014134 Gene3D:2.130.10.10 GO:GO:0004872 GO:GO:0016199 GO:GO:0008201 GO:GO:0008045 GO:GO:0048813 GO:GO:0008039 GO:GO:0007416 GO:GO:0045792 GO:GO:0048854 GO:GO:0031987 GO:GO:0001964 SUPFAM:SSF103575 SUPFAM:SSF101912 GO:GO:0030215 eggNOG:NOG293968 InterPro:IPR027231 PANTHER:PTHR11036 OrthoDB:EOG7Z3F3W EMBL:L26082 RefSeq:NP_723407.2 UniGene:Dm.13264 ProteinModelPortal:Q24322 SMR:Q24322 BioGrid:60311 IntAct:Q24322 STRING:7227.FBpp0110230 PaxDb:Q24322 GeneID:34192 KEGG:dme:Dmel_CG18405 CTD:34192 FlyBase:FBgn0011259 InParanoid:Q24322 KO:K06842 ChiTaRS:Sema-1a GenomeRNAi:34192 NextBio:787331 Bgee:Q24322 GO:GO:2000305 Uniprot:Q24322) HSP 1 Score: 48.1358 bits (113), Expect = 9.505e-6 Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 0 Query: 47 RSTWSMD-QPKVFVDYVRGPLKDDVNRFEGNDTT-NNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISW 118 +S W + +PK++V+ GP +DV +F GN++ ++FK++ +D N L+IGA NT++ L DL+E QR+ W Sbjct: 15 QSAWQENIRPKLYVEL--GP--EDVLKFVGNESVVDHFKLVTKDGNSLLIGARNTVFNLSIHDLVE--QQRLVW 82
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592851764|gb|GAXK01105780.1| (TSA: Calanus finmarchicus comp185151_c0_seq1 transcribed RNA sequence) HSP 1 Score: 85.8853 bits (211), Expect = 1.211e-18 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 0 Query: 54 QPKVFVDYVRGPLKDDVNRFEGNDTT-NNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEI 127 QPKV +DYV GPL D + RF+GN++ +NFK+++ED L +G TNT+Y L+++DL E R RI W PE + +E+ Sbjct: 753 QPKVTIDYVHGPLADTIKRFKGNNSQIDNFKIVVEDGTALFVGGTNTVYILNSKDLTEHRKLRIDWPPEPRDYEL 977
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592757737|gb|GAXK01196676.1| (TSA: Calanus finmarchicus comp249902_c0_seq1 transcribed RNA sequence) HSP 1 Score: 55.8398 bits (133), Expect = 8.893e-9 Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 0 Query: 48 STWSMDQPKVFVDYVRGPLKDDVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEIYF----SSIFPNIYIYILGEE 144 S W +P++ VDY++ DDV F GN T +++FK++ +D + L+IGA N +Y + L E QRI+W + E+ S N YI +L ++ Sbjct: 926 SGWRDSRPRMVVDYLK-QHADDVQTFLGNQTHSDHFKLLRQDGSSLLIGARNVVYNISLNGLQENHQQRITWNSRHRDTELCLVKGKSEDDCNNYIRVLAKQ 1228
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592917871|gb|GAXK01040504.1| (TSA: Calanus finmarchicus comp147473_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.830e-7 Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0 Query: 17 KSQVIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEI 127 KS++ L L C L V SG + W +P++ VDY++ D+V F GN T +++FK++ +D + L+IGA N +Y + DL E D RI+W + E+ Sbjct: 378 KSRITMLKLVC------LVVVGLSGV-----TAWRDSRPRMVVDYLK-QHTDEVLTFLGNSTHSDHFKLLQQDGSSLLIGARNVVYNISLSDLTENTDLRITWNSRTRDREL 677
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592917868|gb|GAXK01040507.1| (TSA: Calanus finmarchicus comp147473_c1_seq1 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.892e-7 Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0 Query: 17 KSQVIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEI 127 KS++ L L C L V SG + W +P++ VDY++ D+V F GN T +++FK++ +D + L+IGA N +Y + DL E D RI+W + E+ Sbjct: 2234 KSRITMLKLVC------LVVVGLSGV-----TAWRDSRPRMVVDYLK-QHTDEVLTFLGNSTHSDHFKLLQQDGSSLLIGARNVVYNISLSDLTENTDLRITWNSRTRDREL 2533
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592914369|gb|GAXK01044006.1| (TSA: Calanus finmarchicus comp130302_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 8.575e-6 Identity = 32/100 (32.00%), Postives = 55/100 (55.00%), Query Frame = 0 Query: 20 VIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISW 118 ++FLLL F V +L + +T ++ D+ D R L +D++ F GN + T++FK++ ED +++GA N IY L +L+E ++RI W Sbjct: 398 LVFLLL-LFSQVNSLDWLEHHRPVHETSYLYNEDELNTSSDNFRKEL-EDLSEFHGNSSHTDHFKLLKEDGTSVLVGARNVIYNLSLPNLIEYTEERIHW 691
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592764426|gb|GAXK01190142.1| (TSA: Calanus finmarchicus comp1727377_c0_seq2 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 2.182e-5 Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0 Query: 69 DVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISW--RPEKK 123 D+ F GN++ +NNFK++ E + +I+G N IY L L E++ + I W RPE K Sbjct: 281 DLTAFAGNNSFSNNFKLLEEGASSIIVGGRNVIYNLSLPHLQEVKQETIHWNCRPEDK 454
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592764427|gb|GAXK01190141.1| (TSA: Calanus finmarchicus comp1727377_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 2.211e-5 Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0 Query: 69 DVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISW--RPEKK 123 D+ F GN++ +NNFK++ E + +I+G N IY L L E++ + I W RPE K Sbjct: 281 DLTAFAGNNSFSNNFKLLEEGASSIIVGGRNVIYNLSLPHLQEVKQETIHWNCRPEDK 454
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592875663|gb|GAXK01081914.1| (TSA: Calanus finmarchicus comp5002335_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 2.881e-4 Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = 0 Query: 71 NRFEGNDTTNN-FKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISW 118 ++F GN + N FK++ ED + ++IGA N IY L L E ++RI W Sbjct: 216 SQFHGNSSEENYFKLLHEDGSYVLIGARNVIYNLSLPRLTEAEEKRIYW 362
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592890975|gb|GAXK01067400.1| (TSA: Calanus finmarchicus comp16353_c6_seq5 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.224e+0 Identity = 13/43 (30.23%), Postives = 23/43 (53.49%), Query Frame = 0 Query: 34 LCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGN 76 L K+ GSL+ +TW F+++ + PL + +F+GN Sbjct: 197 LTYKNSQGSLKLILTTWYYWYSSYFLEFTKFPLFINTLKFDGN 325
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Match: gi|592890976|gb|GAXK01067399.1| (TSA: Calanus finmarchicus comp16353_c6_seq4 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.247e+0 Identity = 13/43 (30.23%), Postives = 23/43 (53.49%), Query Frame = 0 Query: 34 LCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGN 76 L K+ GSL+ +TW F+++ + PL + +F+GN Sbjct: 197 LTYKNSQGSLKLILTTWYYWYSSYFLEFTKFPLFINTLKFDGN 325
BLAST of EMLSAG00000000003 vs. L. salmonis peptides
Match: EMLSAP00000000003 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1001:27360:90377:-1 gene:EMLSAG00000000003 transcript:EMLSAT00000000003 description:"maker-LSalAtl2s1001-snap-gene-0.4") HSP 1 Score: 316.235 bits (809), Expect = 1.742e-111 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 Query: 1 MATTYPHNTIKRSPSHKSQVIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGNDTTNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEIYFSSIFPNIYIYILGEEKKKFFFFF 152 MATTYPHNTIKRSPSHKSQVIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGNDTTNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEIYFSSIFPNIYIYILGEEKKKFFFFF Sbjct: 1 MATTYPHNTIKRSPSHKSQVIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQPKVFVDYVRGPLKDDVNRFEGNDTTNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEIYFSSIFPNIYIYILGEEKKKFFFFF 152
BLAST of EMLSAG00000000003 vs. L. salmonis peptides
Match: EMLSAP00000000793 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1131:332688:362616:-1 gene:EMLSAG00000000793 transcript:EMLSAT00000000793 description:"maker-LSalAtl2s1131-augustus-gene-2.7") HSP 1 Score: 54.299 bits (129), Expect = 1.934e-9 Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 0 Query: 17 KSQVIFLLLSCFYWVLALCVKSGSGSLRQTRSTWSMDQ-PKVFVDYVRGPLKDDVNRFEGNDTTNN-FKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEI 127 K Q I L+L W LA S+ + W +Q K+ DYV + + RF GN T + FK++ D N L+IGA N IY + DL+E +QRI+W P KK +I Sbjct: 4 KLQGISLIL----WTLA--------SVGFSHDPWGENQRAKINTDYVSS-NSNAIYRFLGNQTHKDYFKLLRRDGNSLLIGARNVIYNVSLPDLVENIEQRITWTPSKKDVDI 103
BLAST of EMLSAG00000000003 vs. SwissProt
Match: gi|8134678|sp|Q26473.1|SEM1A_SCHAM (RecName: Full=Semaphorin-1A; AltName: Full=Fasciclin IV; AltName: Full=Fasciclin-4; AltName: Full=Semaphorin-I; Short=Sema I; Flags: Precursor) HSP 1 Score: 50.8322 bits (120), Expect = 5.736e-7 Identity = 28/84 (33.33%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 48 STWSMD-QPKVFVDYVRGPLKDDVNRFEGNDT-TNNFKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRPEKKAFEIYF 129 + W D PK++V + ++ V RF GN++ ++FK++ +D N L++GA N +Y + RDL E +QRI W E+ + Sbjct: 19 AAWVNDVSPKMYVQFG----EERVQRFLGNESHKDHFKLLEKDHNSLLVGARNIVYNISLRDLTEFTEQRIEWHSSGAHRELCY 98
BLAST of EMLSAG00000000003 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold684_size112211-snap-gene-0.14 (protein:Tk06444 transcript:maker-scaffold684_size112211-snap-gene-0.14-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_328717") HSP 1 Score: 50.447 bits (119), Expect = 3.246e-8 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0 Query: 39 GSGSLRQTRSTWSMD-QPKVFVDYVRGPLKDDVNRFEGNDTTNN-FKMIIEDLNILIIGATNTIYFLDTRDLMEIRDQRISWRP 120 G GS W D + K+ +DY+ V +F GN T + FK++ +D + LIIGA N IY + + L+E +QRI+W P Sbjct: 33 GEGSQSPQWDPWGEDLKEKIHIDYLNQ-YSGLVEKFLGNQTHKDYFKLLRQDGSTLIIGARNEIYNISIQGLVENVEQRITWNP 115 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000003 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000000003 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 13
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BLAST of EMLSAG00000000003 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000000003 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 1
BLAST of EMLSAG00000000003 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000003 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000003 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1001:27360..90377- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000003-682769 ID=EMLSAG00000000003-682769|Name=EMLSAG00000000003|organism=Lepeophtheirus salmonis|type=gene|length=63018bp|location=Sequence derived from alignment at LSalAtl2s1001:27360..90377- (Lepeophtheirus salmonis)back to top Add to Basket
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