EMLSAG00000000377, EMLSAG00000000377-683143 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000377
Unique NameEMLSAG00000000377-683143
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592805116|gb|GAXK01149452.1| (TSA: Calanus finmarchicus comp97819_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.528e-1
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 0 
Query:   26 TYSKSFYRQKRSAKRLFENLKEHFDMSLEF 55
            T SK  Y+Q  +A   ++NLK++FD + EF
Sbjct: 1990 TSSKITYKQLHAADNGYQNLKQYFDEAFEF 2079
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592875517|gb|GAXK01082060.1| (TSA: Calanus finmarchicus comp113185_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 5.680e-1
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:   39 KRLFENLKEHFDMSLEFQLRRIGLSSTT 66
             RLF +LK HF  +LEF+L  + L++ T
Sbjct:  213 ARLFCSLKLHFCCALEFKLVAVHLTTAT 296
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592860721|gb|GAXK01096841.1| (TSA: Calanus finmarchicus comp54344_c33_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.197e+0
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0 
Query:    1 MLLKRRISKSRHFKSALLFLFLLQTTYSKS-----FYRQKRSAKRLFENLKEHFDMSLEFQLRRIGLSSTTLKITSE 72
            M  +  ++KS+H +  L+F+  L+T + ++     +Y Q   A+   ENLKE  D++ EF+++  GL S    ++ E
Sbjct:  160 MFFRVMLNKSKH-QHPLIFMKGLKTKHLQNILDFIYYGQVSVAQ---ENLKEFIDIAKEFEIQ--GLQSLMQGVSDE 372
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592901877|gb|GAXK01056498.1| (TSA: Calanus finmarchicus comp304502_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.850e+0
Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0 
Query:   23 LQTTYSKSFYRQKRSAKRLFENLKEHFDMS 52
            LQ    KSFY   RS +R F + KEH   S
Sbjct:  633 LQVVLDKSFYDVNRSFERWFYSKKEHLAKS 722
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592901878|gb|GAXK01056497.1| (TSA: Calanus finmarchicus comp304502_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.854e+0
Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0 
Query:   23 LQTTYSKSFYRQKRSAKRLFENLKEHFDMS 52
            LQ    KSFY   RS +R F + KEH   S
Sbjct:  650 LQVVLDKSFYDVNRSFERWFYSKKEHLAKS 739
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592901879|gb|GAXK01056496.1| (TSA: Calanus finmarchicus comp304502_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.888e+0
Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0 
Query:   23 LQTTYSKSFYRQKRSAKRLFENLKEHFDMS 52
            LQ    KSFY   RS +R F + KEH   S
Sbjct:  633 LQVVLDKSFYDVNRSFERWFYSKKEHLAKS 722
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592901880|gb|GAXK01056495.1| (TSA: Calanus finmarchicus comp304502_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.892e+0
Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0 
Query:   23 LQTTYSKSFYRQKRSAKRLFENLKEHFDMS 52
            LQ    KSFY   RS +R F + KEH   S
Sbjct:  650 LQVVLDKSFYDVNRSFERWFYSKKEHLAKS 739
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592860765|gb|GAXK01096797.1| (TSA: Calanus finmarchicus comp54344_c15_seq4 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.043e+0
Identity = 22/69 (31.88%), Postives = 40/69 (57.97%), Query Frame = 0 
Query:    1 MLLKRRISKSRHFKSALLFLFLLQTTYSKS-----FYRQKRSAKRLFENLKEHFDMSLEFQLRRIGLSS 64
            M  +  ++KS+H +  L+F+  L+T + ++     +Y Q   A+   ENLKE  D++ EF+++  GL S
Sbjct:  237 MFFRVMLNKSKH-QHPLIFMKGLKTKHLQNILDFIYYGQVSVAQ---ENLKEFIDIAKEFEIQ--GLQS 425
[Close]
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Match: gi|592878692|gb|GAXK01079209.1| (TSA: Calanus finmarchicus comp267685_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 9.211e+0
Identity = 17/49 (34.69%), Postives = 25/49 (51.02%), Query Frame = 0 
Query:    9 KSRHFKSALLFLFLLQTTYSKSFYRQKRSAKRLFENLKEHFDMSLEFQL 57
            K++   + LL+  +  TT SKSFYR  ++          HF  SL FQ+
Sbjct:  205 KTKTMTA*LLWE*VPDTTSSKSFYRTTKTTMMELVVTSRHFLNSLSFQV 351
[Close]
BLAST of EMLSAG00000000377 vs. L. salmonis peptides
Match: EMLSAP00000000377 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1058:110779:111072:-1 gene:EMLSAG00000000377 transcript:EMLSAT00000000377 description:"snap_masked-LSalAtl2s1058-processed-gene-0.2")

HSP 1 Score: 162.925 bits (411), Expect = 2.876e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 
Query:    1 MLLKRRISKSRHFKSALLFLFLLQTTYSKSFYRQKRSAKRLFENLKEHFDMSLEFQLRRIGLSSTTLKITSEFFVIEEMNYDT 83
            MLLKRRISKSRHFKSALLFLFLLQTTYSKSFYRQKRSAKRLFENLKEHFDMSLEFQLRRIGLSSTTLKITSEFFVIEEMNYDT
Sbjct:    1 MLLKRRISKSRHFKSALLFLFLLQTTYSKSFYRQKRSAKRLFENLKEHFDMSLEFQLRRIGLSSTTLKITSEFFVIEEMNYDT 83
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000377 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000377 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592805116|gb|GAXK01149452.1|5.528e-143.33TSA: Calanus finmarchicus comp97819_c0_seq1 transc... [more]
gi|592875517|gb|GAXK01082060.1|5.680e-146.43TSA: Calanus finmarchicus comp113185_c1_seq3 trans... [more]
gi|592860721|gb|GAXK01096841.1|1.197e+029.87TSA: Calanus finmarchicus comp54344_c33_seq1 trans... [more]
gi|592901877|gb|GAXK01056498.1|3.850e+046.67TSA: Calanus finmarchicus comp304502_c0_seq4 trans... [more]
gi|592901878|gb|GAXK01056497.1|3.854e+046.67TSA: Calanus finmarchicus comp304502_c0_seq3 trans... [more]
gi|592901879|gb|GAXK01056496.1|3.888e+046.67TSA: Calanus finmarchicus comp304502_c0_seq2 trans... [more]
gi|592901880|gb|GAXK01056495.1|3.892e+046.67TSA: Calanus finmarchicus comp304502_c0_seq1 trans... [more]
gi|592860765|gb|GAXK01096797.1|4.043e+031.88TSA: Calanus finmarchicus comp54344_c15_seq4 trans... [more]
gi|592878692|gb|GAXK01079209.1|9.211e+034.69TSA: Calanus finmarchicus comp267685_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000377 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003772.876e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1058:1107... [more]
back to top
BLAST of EMLSAG00000000377 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000377 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000377 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000377 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1058supercontigLSalAtl2s1058:110779..111072 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1058-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000377 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000377EMLSAT00000000377-696224Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1058:110779..111072-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000377-683143 ID=EMLSAG00000000377-683143|Name=EMLSAG00000000377|organism=Lepeophtheirus salmonis|type=gene|length=294bp|location=Sequence derived from alignment at LSalAtl2s1058:110779..111072- (Lepeophtheirus salmonis)
ATGCTCTTGAAAAGAAGAATTTCCAAATCCAGGCATTTCAAATCCGCTCT
CCTCTTTTTATTTTTATTGCAGACAACATACTCCAAGTCCTTTTATAGAC
AAAAAAGAAGTGCTAAGCGTCTGTTTGAGAATCTAAAAGAACATTTTGAT
ATGAGCTTGGAGTTTCAACTACGAAGGATTGGACTCTCAAGCACTACACT
GAAAAGTAATTATGACATTCATTCTATAAAATAATATATTACTTTAGTTA
CATCGGAATTTTTTGTCATTGAGGAAATGAACTATGATACATAG
back to top
Add to Basket