EMLSAG00000000723, EMLSAG00000000723-683489 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000723
Unique NameEMLSAG00000000723-683489
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592770443|gb|GAXK01184125.1| (TSA: Calanus finmarchicus comp134519_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 7.059e-2
Identity = 25/96 (26.04%), Postives = 41/96 (42.71%), Query Frame = 0
Query:   11 FAVCSAA-SLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALG 105
            FA C A+ S     E    +  LC  +   + D IT +  +D IL  +   C  +    G  +  C   +++ +   +EGIL   + P Q C  +G
Sbjct:   52 FAACLASLSFGSTAEVSSATCDLCIAVVTGLEDYITDDTTMDQILEKVEEICKTL----GALEGLCIQTIESYLPGIIEGILDGQLNPNQICALIG 327          
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592858460|gb|GAXK01099102.1| (TSA: Calanus finmarchicus comp238732_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.474e+0
Identity = 18/49 (36.73%), Postives = 20/49 (40.82%), Query Frame = 0
Query:   19 LPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMN 67
            LPV     Y    LCT+I K V   IT        L  L   CF+  MN
Sbjct:  969 LPVLAMFSYHVSVLCTLITKLVITNITSNTFFSTFLLILISLCFVFLMN 1115          
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592778098|gb|GAXK01176470.1| (TSA: Calanus finmarchicus comp3490_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.648e+0
Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 0
Query:    1 MKLFLIIATLFAVCSAASLP------VPVEDKYDSGKL 32
            MK FL+ +  FA  SAA+LP      +P++D+   G++
Sbjct:  929 MKFFLVASLAFAATSAANLPSHPLPALPLQDQVGVGRI 1042          
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592757009|gb|GAXK01197404.1| (TSA: Calanus finmarchicus comp344014_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.565e+0
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0
Query:   10 LFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDL 50
            +F + SA S+   V   ++S    T   ++VNDQIT EYD+
Sbjct:  918 IFHLLSALSILYIVIYPHESRWFETCRKRRVNDQITQEYDM 1040          
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592757010|gb|GAXK01197403.1| (TSA: Calanus finmarchicus comp344014_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.623e+0
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0
Query:   10 LFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDL 50
            +F + SA S+   V   ++S    T   ++VNDQIT EYD+
Sbjct:  918 IFHLLSALSILYIVIYPHESRWFETCRKRRVNDQITQEYDM 1040          
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4")

HSP 1 Score: 226.483 bits (576), Expect = 1.381e-77
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGYY 107
            MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGYY
Sbjct:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGYY 107          
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25")

HSP 1 Score: 125.946 bits (315), Expect = 3.984e-38
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 0
Query:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106
            MK FL+ ATL  VC++ SLPV  E+K D+ KLC  IFKK+N+ I     +D I+ TL +EC I FM   KW+K+C+AFV+NVVKPQLEG +GH  PPK+TCR LGY
Sbjct:    1 MKFFLMFATLIVVCNSVSLPV--EEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGY 104          
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000000730 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:123079:123572:-1 gene:EMLSAG00000000730 transcript:EMLSAT00000000730 description:"maker-LSalAtl2s1117-augustus-gene-1.22")

HSP 1 Score: 123.635 bits (309), Expect = 8.179e-37
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 0
Query:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106
            MK  L+ AT+  VC++ S  +PVE+K D+ KLC  IFKKVN  I     +  I+ T+ +EC I FM   KW+K+C+AFVDNVVKPQLEG++GH VPPKQTCR LGY
Sbjct:   37 MKFVLMFATVIVVCNSVS--IPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGY 140          
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37")

HSP 1 Score: 51.2174 bits (121), Expect = 1.026e-9
Identity = 30/103 (29.13%), Postives = 53/103 (51.46%), Query Frame = 0
Query:    1 MKLFLIIATLFAVCSAASLPVP-VEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCR 102
            M++F++ A L AV SA ++  P   +K      C  +  K+N+ +  E ++D  L  L   C  V   +G   + C  F++ VVKP++E +L     P++ C+
Sbjct:    1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACK 102          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000723 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000723 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592770443|gb|GAXK01184125.1|7.059e-226.04TSA: Calanus finmarchicus comp134519_c2_seq1 trans... [more]
gi|592858460|gb|GAXK01099102.1|1.474e+036.73TSA: Calanus finmarchicus comp238732_c0_seq1 trans... [more]
gi|592778098|gb|GAXK01176470.1|3.648e+036.84TSA: Calanus finmarchicus comp3490_c3_seq1 transcr... [more]
gi|592757009|gb|GAXK01197404.1|7.565e+039.02TSA: Calanus finmarchicus comp344014_c1_seq2 trans... [more]
gi|592757010|gb|GAXK01197403.1|7.623e+039.02TSA: Calanus finmarchicus comp344014_c1_seq1 trans... [more]
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BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000007231.381e-77100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254... [more]
EMLSAP000000116673.984e-3857.55pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664... [more]
EMLSAP000000007308.179e-3756.60pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:1230... [more]
EMLSAP000000088341.026e-929.13pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754... [more]
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BLAST of EMLSAG00000000723 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000723 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000723 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000723 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1115supercontigLSalAtl2s1115:1254..1670 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1115-snap-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000723 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000723EMLSAT00000000723-696570Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1115:1254..1670-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000723-683489 ID=EMLSAG00000000723-683489|Name=EMLSAG00000000723|organism=Lepeophtheirus salmonis|type=gene|length=417bp|location=Sequence derived from alignment at LSalAtl2s1115:1254..1670- (Lepeophtheirus salmonis)
AGAACAAGACACTCAACTGTTAAGGATGAAACTTTTTTTGATAATTGCAA CTCTCTTTGCTGTTTGCAGTGCAGCGTCCCTTCCAGTTCCAGTGGAGGAT AAATATGACTCGGGGAAACTTTGTACAATGATTTTCAAGAAGGTCAACGA TCAGATTACTCATGAATACGACTTGGATGCTATTTTGTATACTTTGCACA TGGTAAGATATACATATTTAATTATATCCCTATATTTAACCATCTCTCTC TCTCTTACATTGAAATTGTGTAGGAATGTTTCATTGTCTTTATGAATAAT GGTAAATGGCAGAAGAGATGTCATGCATTTGTAGATAACGTGGTTAAACC ACAGCTTGAGGGTATCCTTGGACATAATGTTCCTCCAAAGCAGACCTGTA GAGCCCTTGGTTATTAT
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