EMLSAG00000000870, EMLSAG00000000870-683636 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000870
Unique NameEMLSAG00000000870-683636
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000870 vs. C. finmarchicus
Match: gi|592865843|gb|GAXK01091719.1| (TSA: Calanus finmarchicus comp2156085_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.306e+0
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 0 
Query:    9 VFLIFLCIHPYISLVDGRPSRHN 31
            +F +FL + P + +V+GRP   N
Sbjct:  732 LFFVFLIVEPVVKIVNGRPENWN 800
[Close]
BLAST of EMLSAG00000000870 vs. C. finmarchicus
Match: gi|592850862|gb|GAXK01106682.1| (TSA: Calanus finmarchicus comp37782_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 9.567e+0
Identity = 19/54 (35.19%), Postives = 27/54 (50.00%), Query Frame = 0 
Query:   28 SRHNRQIR--SIGNSGSFLTALMSGFSGN--ARAFTAPRP-------GQGDTLD 70
            SR N  +   S+G SG FLT ++   S +   R F +P P       G+GD L+
Sbjct: 1220 SRDNSSLTALSVGRSGKFLTTMVQSLSNSVCGR*FPSPTPFPNRLLSGEGDLLE 1381
[Close]
BLAST of EMLSAG00000000870 vs. L. salmonis peptides
Match: EMLSAP00000000870 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1150:242147:246987:1 gene:EMLSAG00000000870 transcript:EMLSAT00000000870 description:"maker-LSalAtl2s1150-augustus-gene-1.6")

HSP 1 Score: 221.476 bits (563), Expect = 1.531e-75
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 
Query:    1 MRGSSLTFVFLIFLCIHPYISLVDGRPSRHNRQIRSIGNSGSFLTALMSGFSGNARAFTAPRPGQGDTLDNLVTREAVIHFLEFLAQVTGYYYWPEIEPERVPEKK 106
            MRGSSLTFVFLIFLCIHPYISLVDGRPSRHNRQIRSIGNSGSFLTALMSGFSGNARAFTAPRPGQGDTLDNLVTREAVIHFLEFLAQVTGYYYWPEIEPERVPEKK
Sbjct:    1 MRGSSLTFVFLIFLCIHPYISLVDGRPSRHNRQIRSIGNSGSFLTALMSGFSGNARAFTAPRPGQGDTLDNLVTREAVIHFLEFLAQVTGYYYWPEIEPERVPEKK 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000870 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000870 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592865843|gb|GAXK01091719.1|6.306e+039.13TSA: Calanus finmarchicus comp2156085_c0_seq1 tran... [more]
gi|592850862|gb|GAXK01106682.1|9.567e+035.19TSA: Calanus finmarchicus comp37782_c0_seq1 transc... [more]
back to top
BLAST of EMLSAG00000000870 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008701.531e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1150:2421... [more]
back to top
BLAST of EMLSAG00000000870 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000870 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000870 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000870 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1150supercontigLSalAtl2s1150:242147..246987 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1150-augustus-gene-1.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000870 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000870EMLSAT00000000870-696717Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1150:242147..246987+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000870-683636 ID=EMLSAG00000000870-683636|Name=EMLSAG00000000870|organism=Lepeophtheirus salmonis|type=gene|length=4841bp|location=Sequence derived from alignment at LSalAtl2s1150:242147..246987+ (Lepeophtheirus salmonis)
CAGAGCTCTATCAAGTGTGGAAAGTGATTAGACAAGGAGTTGAATAAAAA
ATAACATATTCTTTTAATAATTATGAGAGGGTCATCTTTGACTTTTGTGT
TCTTAATATTCCTTTGTATCCATCCTTACATCAGTCTCGTGGATGGACGT
CCATCACGTCATAATCGACAAATTCGTTCAATTGGGAACAGTGGTAGTTT
TTTAACAGCTTTAATGAGTGGGTTCAGTGGAAACGCAAGGGCTTTTACAG
CACCAAGACCTGGACAAGGAGATACTTTAGACAATTTAGTAACCAGGGTA
TCTATTGAATTTTCTATGTTTCAAATATTTTGATAATTTAAAAATGTATT
TGGACCCACAGAATTGCAAATATCTATGAACAAGGATTTGAATATTTCGT
TTTTTTTTAAATTAAAATCTAATTATTTGCAAAGTCGAAAACGAATGATA
AACCATTTTATCTTTTTTCATTTTCATTGATTTTTTACAAATAAATCTTC
ATACCAATATTACACATTAAATTTTCTTCAATTTAATAGCCTAATTACTA
TGTCCACCTGATGATGAAGTAAGTTGAAAAAGTAAAATACGATTTCTCCC
AAACTTTTTTTGCCAGTGTATATAGCCCCATATTTTATTGACATATTTGA
GTCCATCAAGGATTATTATTCAAATATTTGGAATAAGCTAGAATACAAAA
TAGTTTTACTTATAATTTAAAACCCTTGAATGATATTTTCCCTTTATCCC
CAAAGATACCCAAACAATTAGTCATTTTTTTTATTGGTCCATGAATTTTG
ACTACTCTAAATTCAATTTTTACCACCCACAAAGGATTACTAATAATTTT
TTTAATAGAAATGGAGGAATGTAATTTACACCCAATTTGAGATAAATGAT
CCCTCTAGCTTGCTTTTGTGTTGATGCAACAAATATACAATGGTTTAACA
AGAATAATAAGTAAAGACAAATGAACAGTGTGATCAAAGCAGACTTATGC
TCCTATATGTGCACTTTTTTTGTTTATTTTCAGAAGTGTCCGCAAGGGGA
GGGATGAAGAAGCTGTAGGGGGCTACAGCCCCTTCATCCCTCCCCTTGCG
GAATTAATAGCCCCCTATTAAGGATTTTAACACTTCCTACTAGAAAATGT
ACTATTAGAATTTTTTTTTTTTAAATCAATATTTGAAATTTTATTAAAAT
TGTTACGATTTTTTTAATAATTTCAATATTTTGTTAATTGCAATAAATTT
TTGAAATTTTTCTACAAAAATTGTAATATTTGAAAAAAAAAATTCAAAAA
GTTTTTTATTTGAAATTTAATTTTAGAAAATTTCAGTTTTTTCTGAACAG
CTCTGGATTTTTGAAATTTTTTGAGAATATTTATGCATTTTTGAAATTAT
GTAAGAACATCGATGGATTTTTGAAATTTTTGAGAATATTTATGGATTTT
ATAATTTTTTTTGATAATATTAATAGATTTTGGAAATTTTTGAGAATATT
TATAGACTTTGGAAATCAAAAAATTTCATTGTTTGTGATTAACTGTGGAC
TTTTGATATTTTTTTCAAAAAATTTAATTTTTTTTTCTAAAAATCTTAAT
TTTTTGATTTTGTTTTCAAAAATTCAACAAACCAAGCCCCAGTCCTAAAA
TATATACATAAGCTTGCGGACGCCACTAGTTATATTATGTTTTCTCTTTG
TTCCAATGACGTCATGAAATTATCCATTCATTTGCATAGATACTTTATTA
ATTTATGAGTACTCATAATAAGTGGTATTGCATAAATGAATATTCATCTC
CTACTCCCCTTCGACTTGATAGTTTGATGATTATTACTATATATAAATAT
CCCCCACTGATATCTTTCATATATTTCATTTTAACGTTTTAACAAAAAAC
AATACTTTTTATTTTTTAATTTGTGTAAAAAAATTTATTCAGTACAATAT
ATTCAATAAAAAGTATATATTCTATCTAAACATTCTGAGGTTGAAACATT
TAAAGGGGGTCCCCGGTTATCGGGGTTTTTGGGAACGAATAAAATCTGCA
TTATATAAAATCGGGGTTGTAAGGGGACTTTTTAGTACTAAACCCTGTAA
AATGAGAGAGATTATTTTTCAAGTTCCACTTTTAACAATTTTATCGTTTA
TTTTTTTATGGTTATGAAAATAAAATATTTTATTCAACATAAATGCCAGA
AAAGATACATGTAATATACTTATAAAATTTAATCAGTTATTTACTAGATT
TTTAATCTGCTCATTTCAATACTGTCAAGTTTAAATAATCGGAAGTTAGC
CAATTTCTATTCAGAGAGCTTTTTCATTCCATGTAGGCATATTAAGTTAC
AACAAAAAGTTATCTTCATAAACATTACACTCTCCCTTATGAAAAAATAT
ACATTTCTATTATATGAATATAAAGACATATTATGAACAAACTCATTAAC
AAATACCAAAATTCTTGTTTACTTGAATAAATAGTATTTTTATAATTTAT
TATTGTAATATAAAAAACGGCAATTTGAGGGAAATATACTGCACTATACG
GGAAGTCAGAATAATTCCAAACATTATCATTAAAGGGCTAACTTCTCTTA
ATTTGTAATATCCACTCTGAAACCTCATAAATCATACAAATAATAAAGTT
CATGGAATAAAACGGATTTTAAATCAATTGAGTTTTGAATGTTATTGTGG
CAAATGACATCTTGATCGATCACTTTCTTTTTTATAGCCCCAGTCGATTG
CGGTCCCATAACTCACTACAAATATTCATTCCTGAGGAATAAATGGGCAT
CCCAAGTTGAACAGAAGCAAGGCAAATTTTCATCATTTGCAGGACCTTAG
CCTCAAAATTATCAACACCCCTATACAATTACTTACATATACATAGATTA
TATTATAATATCTATATAAAATAAGAGAGTGTCTGCATTGAAGGGCTGAA
TAGAGGGGAGTAGAAACAAAGAATGAGGGTAGAAGAAAAGAAAAAGAGAA
AGTCTAAAAGGGTTTTGGGGATCCCCGTAGAAATGCTGGATATTCATTAC
TTTATTTCAGGAAATCATTTGACTTGATTTATTTTTAATGTACGTAAATT
TATATTCTTTTACCCAATTTTATTTTATTTTATTTTTCAATCCGTATTTC
GTTTAATCGCGCCATTTGCTGTAAAATAAGTCATCCCAATATAGTATTTA
AAGGTACAAAAAAAAGTGTCATGGATTAATTTAAAATTTTAATGGATTAT
AAAACATTAACTAAGTTAGTATATGATTTAGTTTTAAAATAAATTTATAA
TGCGACGTATATTAATTTTAACCCGATATTAGTACCTTCAATCTTTATCG
TCTTAATTTTTAGCCTTTTCTTTTTTTTCAATAACTATCATTAATTTTCT
GAAGAGTGTGGGAAAATATTCATAAACTTGAATTTCATATTATATAATTC
AGTTGCAGGTAATTAAAAATATCCACTTTTGCATAATACTGAATTCTGTA
ATATATAAAAATTTCAATTATTTATCTTGATNNNNNNNATCATATTTTAT
TAGATCACAGATTTTGGTATAGACTATAACATAAACAAGCAAGAGGCGTA
AAATATTGATAATAAATTGGTCATAACTTCCTTTATATTGAAGCTAAAGG
CATGAGTTTGGTATCAAAAAAGTCTTTTTTACCATAATTTATTAGATAAA
ACAGGTTTAAAAGGAAAAAATAAAAATTGAATTTACCCAAACAATGATCT
AAGCTCAGTAGAACCATAATTCTCTCTCCTACCTTTTCCTTAAGCTCTTA
CACAAATCCCATCTATAATTATTTGTTAGAGATACACATTATTTATTTGG
TTGATTCAATTCAATGACTAATTGAATAAAAATGAATATAAAATGTTTTA
ACATGTTAATTTTTAACTTTTTAATTTCTTTATTTTCAGGAAGCAGTGAT
TCACTTTTTGGAGTTTTTAGCTCAAGTTACTGGGTATTACTATTGGCCAG
AAATTGAACCTGAAAGGGTTCCAGAAAAGAAGTAGTTTTTTTTTGTTTTT
ATTACAAAATATAAACTAGTATTGTTAAATGGTCCTCATCATCCAACTAC
GGGACACAAAGCGCATTAATTGTTATACTTATATTATCTGAGATTTCGAA
TGTTTACATGTTCCTGAAGGTGTKTAGCCACACCCATCCGGTGTGTATGG
TCAATTTATTTCTACGTGCTTTGCAGATTATCATTTTCAAAAATCAAAAA
TTATCACAGTGAATAAAAAATGCTTTTTGCATGGCGAAGAGAAAATGGCA
GGKCAGKAATTTTCCTGCTTCAAAAGTTTACGTATCATGGCATTTACATT
CTCCCAAAGAAGACACATTTTGAACCGCAAAACAACTTCATTTTGAAGAA
TTGTTAAGATTTGAATATTATAATGTACAAAGTTCATGGAACTAAATTGT
CTATTCACGTATAAGTGAACACGCCATAGAATTAAAAACCATAGAGTGAG
GATGTGAAGAACCCATTGACCCCGTTATAGTACATCAAAATATTCAAATT
TTATTAGTAATAGATAATTATACTAGCAACATAGAGTGCACTTTTAATAT
TTTTATGTTCCTTAGTGTGTTTTACAATTGATTATATTAATCTGTACGGA
ACTCTTCAGTTTTATAGAAGTATAGAATGATTCATTTCACAATCTGAAAG
GGTCATGCATTATTTTTTTGGTCAACTATCTTTGGGCTTCAAAATACTTC
CCCAGGGTTATTAGAACAAGAACAATCGTATAGAAAATAAAGTAAATTTG
TTAAGTAACTCTCTTCCTCTTTTGAGTGACGTCATTCGGGG
back to top
Add to Basket