EMLSAG00000000928, EMLSAG00000000928-683694 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892594|gb|GAXK01065781.1| (TSA: Calanus finmarchicus comp5599_c3_seq2 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 2.216e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 835 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLGG---KPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 1050
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892591|gb|GAXK01065784.1| (TSA: Calanus finmarchicus comp5599_c3_seq5 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 2.242e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 547 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLGG---KPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 762
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892595|gb|GAXK01065780.1| (TSA: Calanus finmarchicus comp5599_c3_seq1 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 2.295e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 835 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLGG---KPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 1050
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892593|gb|GAXK01065782.1| (TSA: Calanus finmarchicus comp5599_c3_seq3 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 2.352e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 547 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLGG---KPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 762
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892589|gb|GAXK01065786.1| (TSA: Calanus finmarchicus comp5599_c3_seq7 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 2.791e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 401 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLG---GKPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 616
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892592|gb|GAXK01065783.1| (TSA: Calanus finmarchicus comp5599_c3_seq4 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 2.956e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 401 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLG---GKPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 616
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892587|gb|GAXK01065788.1| (TSA: Calanus finmarchicus comp5599_c3_seq9 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 3.000e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 172 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLG---GKPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 387
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892590|gb|GAXK01065785.1| (TSA: Calanus finmarchicus comp5599_c3_seq6 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 3.246e-4 Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 0
Query: 271 DERILKPCVSITPV--SNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
D R ++P VSITP+ SN + GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 172 DGRPIQPNVSITPIGDSNLGDDASKRAVPTTGIEIIPLG---GKPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 387
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892581|gb|GAXK01065794.1| (TSA: Calanus finmarchicus comp5599_c3_seq15 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 3.388e-3 Identity = 52/173 (30.06%), Postives = 71/173 (41.04%), Query Frame = 0
Query: 52 LKGLARKLGLKFMALRGGA----VYLSTEAFYLE--IKDNG---EEILHILNPE-SIEILPRG------------GD---LVAHLKGLMEL----------KPSNWKGLSTLQDEL------KSILGD--DLIP---------RVGGTPAQIRLF------DNYTALSILPQN 166
L+ AR++GLKFM Y+STE FY+E I NG E +H NP+ S+ P GD V H+KGLM + K W+ L L+ +L +S + D LI R GG P ++R F + A +ILP N
Sbjct: 256 LETTARQMGLKFMVHSTNPNTHNFYISTETFYVEICIDQNGTVLETRIHHQNPQGSMSSTPNTVSAPEISDCLSKGDFTMFVEHIKGLMAVYDLPDCGNVDKSRAWQALYNLEHDLTLLASGQSWVTDINQLIHKTGLGMVHNRAGGIPMKLRFFLPPYELLDMEAQTILPMN 774
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Match: gi|592892585|gb|GAXK01065790.1| (TSA: Calanus finmarchicus comp5599_c3_seq11 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 2.097e-1 Identity = 24/45 (53.33%), Postives = 26/45 (57.78%), Query Frame = 0
Query: 299 IGIEIIPLGSGVNSSITSKKL------LNKTYRDIKRSLSEDDKR 337
GIEIIPLG IT+ L L RD+KRSLSEDDKR
Sbjct: 35 TGIEIIPLG---GKPITTGGLTVSPVKLKAKARDLKRSLSEDDKR 160
BLAST of EMLSAG00000000928 vs. L. salmonis peptides
Match: EMLSAP00000000928 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1161:36952:70550:1 gene:EMLSAG00000000928 transcript:EMLSAT00000000928 description:"maker-LSalAtl2s1161-augustus-gene-0.12") HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0 Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query: 1 MEKLRRRNAPSLLEWSRSLRFTLSDPNFSVCPVSITWDNPGSSRNASSLLYLKGLARKLGLKFMALRGGAVYLSTEAFYLEIKDNGEEILHILNPESIEILPRGGDLVAHLKGLMELKPSNWKGLSTLQDELKSILGDDLIPRVGGTPAQIRLFDNYTALSILPQNNHFVLRIRDPFPLAEEKLTELEKICGFNLFELVGPRGGYLMDLIVPDSPLFMVDSLNEKGFQDVVCYPGANIKVCASNKLATNSSQLGFSSCLESLSSRKNNLFDERILKPCVSITPVSNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKLLNKTYRDIKRSLSEDDKRSRSLKKGKNVDIRLHLPSINHPHLVQRIKIVHFLVLTQAKRLLNCKTNRLILSGKQSNIKVLIKIYWLLETVLLSLYYVILLNFLRNATKIKKNKRRKTRLKGS 441
MEKLRRRNAPSLLEWSRSLRFTLSDPNFSVCPVSITWDNPGSSRNASSLLYLKGLARKLGLKFMALRGGAVYLSTEAFYLEIKDNGEEILHILNPESIEILPRGGDLVAHLKGLMELKPSNWKGLSTLQDELKSILGDDLIPRVGGTPAQIRLFDNYTALSILPQNNHFVLRIRDPFPLAEEKLTELEKICGFNLFELVGPRGGYLMDLIVPDSPLFMVDSLNEKGFQDVVCYPGANIKVCASNKLATNSSQLGFSSCLESLSSRKNNLFDERILKPCVSITPVSNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKLLNKTYRDIKRSLSEDDKRSRSLKKGKNVDIRLHLPSINHPHLVQRIKIVHFLVLTQAKRLLNCKTNRLILSGKQSNIKVLIKIYWLLETVLLSLYYVILLNFLRNATKIKKNKRRKTRLKGS
Sbjct: 1 MEKLRRRNAPSLLEWSRSLRFTLSDPNFSVCPVSITWDNPGSSRNASSLLYLKGLARKLGLKFMALRGGAVYLSTEAFYLEIKDNGEEILHILNPESIEILPRGGDLVAHLKGLMELKPSNWKGLSTLQDELKSILGDDLIPRVGGTPAQIRLFDNYTALSILPQNNHFVLRIRDPFPLAEEKLTELEKICGFNLFELVGPRGGYLMDLIVPDSPLFMVDSLNEKGFQDVVCYPGANIKVCASNKLATNSSQLGFSSCLESLSSRKNNLFDERILKPCVSITPVSNTSTILQVQNTKKIGIEIIPLGSGVNSSITSKKLLNKTYRDIKRSLSEDDKRSRSLKKGKNVDIRLHLPSINHPHLVQRIKIVHFLVLTQAKRLLNCKTNRLILSGKQSNIKVLIKIYWLLETVLLSLYYVILLNFLRNATKIKKNKRRKTRLKGS 441 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000928 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000928 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000000928 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000928 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000928 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000928 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000928 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1161:36952..70550+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000928-683694 ID=EMLSAG00000000928-683694|Name=EMLSAG00000000928|organism=Lepeophtheirus salmonis|type=gene|length=33599bp|location=Sequence derived from alignment at LSalAtl2s1161:36952..70550+ (Lepeophtheirus salmonis)back to top Add to Basket
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