EMLSAG00000001041, EMLSAG00000001041-683807 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592800874|gb|GAXK01153694.1| (TSA: Calanus finmarchicus comp1086407_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 9.903e-3 Identity = 21/88 (23.86%), Postives = 35/88 (39.77%), Query Frame = 0 Query: 7 YSWNMFYMVLFVFFPLDLVAS-DCVCGQGAAPDFMS---SIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCF 90 Y ++V F+ P + + +C+CG+ + S I +PW L+ N +PL C G L+N +V C Sbjct: 46 YCEEEMFLVFFLLVPSHVYSEGECLCGESPSSVSQSVTLKIVGGQEAEINEFPWQCLLDIKGNSTSPLQQCGGTLINDRFVLTAAHCI 309
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592774721|gb|GAXK01179847.1| (TSA: Calanus finmarchicus comp769489_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 1.822e-2 Identity = 24/100 (24.00%), Postives = 40/100 (40.00%), Query Frame = 0 Query: 27 SDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSK 126 +DC CG + D G YPW++ + + +GMC G+++N ++ C P N+ +V HD T +LDS+ Sbjct: 580 ADCRCGMKKQNTRIVGGQDVDAG---EYPWMAFIAFKNQTGDIVGMCGGSIINSKWIITARHCLFKNYISGPMHPTSNV----EVFLGLHDETAEQLDSR 858
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592862158|gb|GAXK01095404.1| (TSA: Calanus finmarchicus comp1887993_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 3.008e-2 Identity = 26/83 (31.33%), Postives = 33/83 (39.76%), Query Frame = 0 Query: 12 FYMVLFVFFPLDLVASDCVCG--QGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNP---LGMCSGALVNQHYVALDESC 89 F +VL + L L ASDC CG Q F + +PW +L+ N + P C G LVN YV C Sbjct: 1006 FTLVLLIVQSLGLKASDCRCGETQNKKKYFDLKVDRGEEAGINEFPWAALLK-IRNYSRPGVQYHRCGGTLVNDRYVLTAAHC 1251
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592797513|gb|GAXK01157055.1| (TSA: Calanus finmarchicus comp1679533_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 1.434e-1 Identity = 30/104 (28.85%), Postives = 38/104 (36.54%), Query Frame = 0 Query: 31 CGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTT 130 C G P I K TG +PW + VT KN C G L+N YV C P N+ + KV +HD T E + K+ T Sbjct: 1013 CQCGIKPSAKVRIKPKITGGEEADKNEFPWAAFVT--ITKNGKHTRCGGTLINDRYVLTAGHC----------VPTSNLEI--KVTLGEHDITQRENELKLTAT 1282 HSP 2 Score: 31.187 bits (69), Expect = 1.185e+0 Identity = 25/79 (31.65%), Postives = 32/79 (40.51%), Query Frame = 0 Query: 29 CVCG----QGAAPDFMSS-IADKPTGLTTVYPWLSLV----TGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98 C CG GAAP S +A +PW++L+ TG K C G L+N YV C Y +EV Sbjct: 116 CECGVRKSGGAAPCSRSGRVAGGDEANVGEFPWMALLVIRSTGKNTKR-----CGGTLINSRYVLTTAHCALYSHDIEV 337
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592814039|gb|GAXK01140529.1| (TSA: Calanus finmarchicus comp476341_c1_seq2 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.719e-1 Identity = 21/78 (26.92%), Postives = 34/78 (43.59%), Query Frame = 0 Query: 25 VASDCVCGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98 ++SDCVCG+ MS + K TG +PW +L+ C G+L+N +V C Y ++ + Sbjct: 107 LSSDCVCGERRP---MSKLDLKITGGQDAGVNEFPWAALLL--ITDGGKPRRCGGSLINDRFVLTAAHCLPYASQLNI 325
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592862145|gb|GAXK01095417.1| (TSA: Calanus finmarchicus comp200984_c3_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 4.362e-1 Identity = 20/87 (22.99%), Postives = 30/87 (34.48%), Query Frame = 0 Query: 26 ASDCVCGQGAAPD--FMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGK 110 + DC CG D F I+ +PW L+ N + C G L+N +V C ++V+ N K Sbjct: 125 SGDCNCGVRKYEDSPFAVRISGGEEAEINEFPWAVLLRITQNGTSRTSRCGGTLINDRFVLTAAHCVPRSSGIDVEVILGEHNTRSK 385
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592814040|gb|GAXK01140528.1| (TSA: Calanus finmarchicus comp476341_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 4.954e-1 Identity = 26/95 (27.37%), Postives = 44/95 (46.32%), Query Frame = 0 Query: 8 SWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98 +W + ++V V ++L +SDCVCG+ P MS + K TG +PW +L+ C G+L+N +V C Y ++ + Sbjct: 62 AWVLVFLV-SVTSSINL-SSDCVCGE-RRP--MSKLDLKITGGQDAGVNEFPWAALLL--ITDGGKPRRCGGSLINDRFVLTAAHCLPYASQLNI 325
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592801778|gb|GAXK01152790.1| (TSA: Calanus finmarchicus comp403592_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 5.874e-1 Identity = 19/68 (27.94%), Postives = 26/68 (38.24%), Query Frame = 0 Query: 27 SDCVCGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCF 90 S C CGQ F + G +PW +L++ P+ C G+LVN YV C Sbjct: 139 STCRCGQRKYSTFGQFFGTRVVGGKETEVNEFPWAALLSIRSKGKKPV-RCGGSLVNDRYVVTAAHCI 339
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592756414|gb|GAXK01197999.1| (TSA: Calanus finmarchicus comp1396581_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 7.208e-1 Identity = 19/86 (22.09%), Postives = 33/86 (38.37%), Query Frame = 0 Query: 10 NMFYMVLFVFFPLDLVA----SDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFD 91 M + + + F L + +DC CG P F+ + +PW +L+ + C G+L+N +V C D Sbjct: 146 KMMLLSIMIHFVLQVSVQGNHADCKCGGRNEPPFVERVIGGVEAGVGEFPWAALLE-IKEYGIVVDRCGGSLINDRFVLTAAHCVD 400
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592913075|gb|GAXK01045300.1| (TSA: Calanus finmarchicus comp3022210_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 1.421e+0 Identity = 18/63 (28.57%), Postives = 24/63 (38.10%), Query Frame = 0 Query: 29 CVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFD 91 C CG + KP YPW +LVT GMC G+L+ ++ C D Sbjct: 747 CKCGIKKNSRIIGGHETKPQN----YPWTALVTSSIYS----GMCGGSLIASEWILTAAHCLD 911
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Match: EMLSAP00000001041 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:524:-1 gene:EMLSAG00000001041 transcript:EMLSAT00000001041 description:"maker-LSalAtl2s1172-augustus-gene-0.29") HSP 1 Score: 274.633 bits (701), Expect = 9.577e-96 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 Query: 1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS Sbjct: 1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001041 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 21
Pagesback to top
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001041 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001041 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001041 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001041 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1172:1..524- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001041-683807 ID=EMLSAG00000001041-683807|Name=EMLSAG00000001041|organism=Lepeophtheirus salmonis|type=gene|length=524bp|location=Sequence derived from alignment at LSalAtl2s1172:1..524- (Lepeophtheirus salmonis)back to top Add to Basket
|