EMLSAG00000001071, EMLSAG00000001071-683837 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001071
Unique NameEMLSAG00000001071-683837
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001071 vs. C. finmarchicus
Match: gi|592891754|gb|GAXK01066621.1| (TSA: Calanus finmarchicus comp4270_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 7.014e-2
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 0 
Query:    1 MSMFSGLTNQISGWVANKQG 20
            MSMFSGL NQISG+VA K G
Sbjct:  325 MSMFSGLGNQISGFVAQKMG 384
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BLAST of EMLSAG00000001071 vs. C. finmarchicus
Match: gi|592891755|gb|GAXK01066620.1| (TSA: Calanus finmarchicus comp4270_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 7.604e-2
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 0 
Query:    1 MSMFSGLTNQISGWVANKQG 20
            MSMFSGL NQISG+VA K G
Sbjct:  325 MSMFSGLGNQISGFVAQKMG 384

HSP 2 Score: 31.9574 bits (71), Expect = 7.519e-1
Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 0 
Query:   68 GMAQGFLSKAMAAKDGMKEKVGGFQPPNLHGLGN---NIMSGXTNLIPGRK 115
            G A G + KA + K+G+KEK  G    N+ G+G+    +M     LIPG K
Sbjct:  715 GFAAGLMMKAHSLKEGVKEKSSGINLGNVQGIGSMAGGVMGQVQGLIPGMK 867
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BLAST of EMLSAG00000001071 vs. L. salmonis peptides
Match: EMLSAP00000001071 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:1168174:1169631:1 gene:EMLSAG00000001071 transcript:EMLSAT00000001071 description:"augustus_masked-LSalAtl2s117-processed-gene-11.5")

HSP 1 Score: 279.641 bits (714), Expect = 2.756e-97
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 
Query:    1 MSMFSGLTNQISGWVANKQGKNEGEAPVPPENGGGEDPLAQQQQQAGAMGEAGVEGGEAPNAAGRVTGMAQGFLSKAMAAKDGMKEKVGGFQPPNLHGLGNNIMSGXTNLIPGRKEEEVPTPPEPNPPTDMGGEMMEGGEEIVQE 145
            MSMFSGLTNQISGWVANKQGKNEGEAPVPPENGGGEDPLAQQQQQAGAMGEAGVEGGEAPNAAGRVTGMAQGFLSKAMAAKDGMKEKVGGFQPPNLHGLGNNIMSGXTNLIPGRKEEEVPTPPEPNPPTDMGGEMMEGGEEIVQE
Sbjct:    1 MSMFSGLTNQISGWVANKQGKNEGEAPVPPENGGGEDPLAQQQQQAGAMGEAGVEGGEAPNAAGRVTGMAQGFLSKAMAAKDGMKEKVGGFQPPNLHGLGNNIMSGXTNLIPGRKEEEVPTPPEPNPPTDMGGEMMEGGEEIVQE 145
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001071 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001071 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592891754|gb|GAXK01066621.1|7.014e-280.00TSA: Calanus finmarchicus comp4270_c0_seq2 transcr... [more]
gi|592891755|gb|GAXK01066620.1|7.604e-280.00TSA: Calanus finmarchicus comp4270_c0_seq1 transcr... [more]
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BLAST of EMLSAG00000001071 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010712.756e-97100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:11681... [more]
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BLAST of EMLSAG00000001071 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001071 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001071 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001071 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:1168174..1169631 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s117-processed-gene-11.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001071 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001071EMLSAT00000001071-696918Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:1168174..1169631+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001071-683837 ID=EMLSAG00000001071-683837|Name=EMLSAG00000001071|organism=Lepeophtheirus salmonis|type=gene|length=1458bp|location=Sequence derived from alignment at LSalAtl2s117:1168174..1169631+ (Lepeophtheirus salmonis)
CTGTTCTCTTCTTTTCTCCTTCTCACGCACTTTCTTCTTCTCCTTCAAAA
GCCATTCAAGTAAAAGTTTGAAAGAATCAGTCACTCAGTGAAATTTTCTT
GTTTTTATCTAGTGGTCTTCTGCTTCTTCCATTCCTTCTGAATAGTTATT
TATCTCCAACAAAGAATTCTTCTCCTGATTTGAGTGAGTGGTACTGCTTA
TTTCGGCATACATACATAAATATAATCCCCTTAGAGAAGAGGCTGTTTCC
CTACGGCTCCGTACTGTTTTCCTCTCTCMTTATTGTGAGTTTATGTGCGT
TTGTGATTAATTAACTAATCATCATTTCATAGCCATCAACACAACCTCCT
TCCTTAGTCATTCCCTCCCGAACGAAGACCCAATCTTTTTTTAAGACACA
CCAAAAAGTTATTAGAAAATTTTAATTATCCAGGATGTCAATGTTCTCGG
GATTAACCAACCAGATCTCTGGATGGGTCGCAAACAAACAGGGTAAAAAC
GAAGGTGAAGCTCCTGTTCCACCAGAAAATGGAGGTGGTGAAGATCCACT
TGCTCAACAGCAACAACAGGCKGGAGCCATGGGCGAAGCTGGTGTAGAAG
GAGGAGAAGCACCCAACGCGGCAGGKCGAGTGACTGGTATGGCCCAGGGA
TTCCTCTCTAAGGCCATGGCAGCAAAGGACGGAATGAAAGAAAAGGTGGG
TGGCTTTCAACCCCCAAATCTTCATGGTCTAGGAAATAATATTATGTCGG
GAGKGACAAATCTGATTCCGGGACGCAAGGAAGAAGAAGTTCCTACACCT
CCAGAGCCTAATCCTCCAACTGACATGGGAGGCGAGATGATGGAAGGGGG
TGAAGAGATTGTCCAGGAGTAAAGAAAGAGGCATAGAACCCAATCAATTC
CCCCTTACAACTCAACGTATCCTACAACAACCATGAATTAATTAGTACTC
ATTATTTATTCCTTTAATTTTTATTATTAATCATTAAATATTATCAAATA
ACTTTATTGTTTTAAATTTCTGCGACTAATTAAAAAAGAAATCAAATTTA
CGATCTTCATATTAATCAAACATAATTATTAATATTATTATAATTTTTAA
CAAGAAAGTAATTTTTTTTAGTCATAGTGGCTTTTGAACATCACTGTAAA
TAACTAAATTGATAAAATATTATAACATCAATCAGAATTATTAAAAAAAA
AAAAAAGAAGGAACTCGGCACGAATAAAGAGGGAATTTCATATTTTAGTT
CAAATTATATTTAAATATATCCTCTATTATTATACACAATTAACTAACTA
CTAACTAAGAGCCCTCTATCCTCGTGACGCCTATTTAAATATCTAAATAT
TAATCTCTATATATATATAACTTTGTAAAGTTGTTTTTAAGTTTTATTAA
TAATTTTATTAATATCATTATTTGTTGGATTCTGCAATAAAAAAAATGTA
ATGTCGTT
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