EMLSAG00000001316, EMLSAG00000001316-684082 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001316
Unique NameEMLSAG00000001316-684082
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Match: EMLSAP00000001316 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:82149:82639:-1 gene:EMLSAG00000001316 transcript:EMLSAT00000001316 description:"maker-LSalAtl2s1222-augustus-gene-0.7")

HSP 1 Score: 287.73 bits (735), Expect = 1.252e-100
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
            MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR
Sbjct:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
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BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Match: EMLSAP00000011944 (pep:novel supercontig:LSalAtl2s:LSalAtl2s846:177909:178785:1 gene:EMLSAG00000011944 transcript:EMLSAT00000011944 description:"maker-LSalAtl2s846-augustus-gene-0.6")

HSP 1 Score: 265.388 bits (677), Expect = 9.264e-92
Identity = 125/140 (89.29%), Postives = 137/140 (97.86%), Query Frame = 0 
Query:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
            MSRG+ CNLD+KLNQSYS CPDEFGNASFLS+PTR+ELLM+RVQTLVQQSNELSKNEMEMLQALR+TL+ CVEEMI+AIEAEITKNQDLRCNTIK+AQKIIQDRFHSIKPDEDEL+GFSSELQLFI+D+DTFQDCVPGRR
Sbjct:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
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BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Match: EMLSAP00000000699 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299:56785:-1 gene:EMLSAG00000000699 transcript:EMLSAT00000000699 description:"maker-LSalAtl2s110-augustus-gene-0.3")

HSP 1 Score: 259.225 bits (661), Expect = 1.949e-89
Identity = 123/140 (87.86%), Postives = 135/140 (96.43%), Query Frame = 0 
Query:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
            MSRGM CNLD+KLNQSYS CPDEFGNASFLS+PTR+ELLM+RVQTLVQQSNELSKNEMEML+ALRATL+  VEEMI+AIEAEITKNQDLRCNTIK+AQ+IIQDRF SIKPDEDEL+GFSSELQLFI+D+DTFQDCVPGRR
Sbjct:    1 MSRGMDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLKALRATLLYSVEEMISAIEAEITKNQDLRCNTIKHAQQIIQDRFRSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
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BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Match: EMLSAP00000001584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:95760:96281:-1 gene:EMLSAG00000001584 transcript:EMLSAT00000001584 description:"maker-LSalAtl2s1274-augustus-gene-0.24")

HSP 1 Score: 247.284 bits (630), Expect = 1.563e-84
Identity = 114/140 (81.43%), Postives = 130/140 (92.86%), Query Frame = 0 
Query:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
            MS  M CNLD+KL+QSYS CPDEFGNASFLS+PTRLELLM+R Q+LV QSNELSKNEMEM+QAL++TL+SCVE+MI++IE E+TKNQDLRCNTIK+ Q+IIQDRFHSIKPDEDELKGFSSELQLF  D+DTFQDCVPGRR
Sbjct:   12 MSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
[Close]
BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Match: EMLSAP00000002948 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:22493:22980:-1 gene:EMLSAG00000002948 transcript:EMLSAT00000002948 description:"maker-LSalAtl2s1696-augustus-gene-0.5")

HSP 1 Score: 187.578 bits (475), Expect = 3.801e-61
Identity = 89/139 (64.03%), Postives = 113/139 (81.29%), Query Frame = 0 
Query:    2 SRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
            ++   CNLD+K NQSYS CPDEF NASFLSNPTR+ELLMSR QTLV+ SNEL+KNE EML AL+ TL+S V +++ A+E EITK Q+LRCNTIK+A + IQ+RFHS++PDE+ELK FSSELQ FI  +++  DCV  ++
Sbjct:    3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
[Close]
BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Match: EMLSAP00000002108 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:3406:1 gene:EMLSAG00000002108 transcript:EMLSAT00000002108 description:"maker-LSalAtl2s1398-augustus-gene-0.8")

HSP 1 Score: 105.145 bits (261), Expect = 4.246e-29
Identity = 51/140 (36.43%), Postives = 92/140 (65.71%), Query Frame = 0 
Query:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLM-SRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGR 139
            M  G+S   +   + +Y  C D+F N+ FLS+PT+ E++M  ++  LV QSNELSKNE+EM+ ALR +L+  V ++I +++++I + Q +RC+ +K     +Q+ F+  + DE EL+ F++ELQ F+ +++   +C+  +
Sbjct:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001316 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001316 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001316 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000013161.252e-100100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:8214... [more]
EMLSAP000000119449.264e-9289.29pep:novel supercontig:LSalAtl2s:LSalAtl2s846:17790... [more]
EMLSAP000000006991.949e-8987.86pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299... [more]
EMLSAP000000015841.563e-8481.43pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:9576... [more]
EMLSAP000000029483.801e-6164.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:2249... [more]
EMLSAP000000021084.246e-2936.43pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:... [more]
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BLAST of EMLSAG00000001316 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001316 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001316 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001316 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1222supercontigLSalAtl2s1222:82149..82639 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1222-augustus-gene-0.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001316 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001316EMLSAT00000001316-697163Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1222:82149..82639-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001316-684082 ID=EMLSAG00000001316-684082|Name=EMLSAG00000001316|organism=Lepeophtheirus salmonis|type=gene|length=491bp|location=Sequence derived from alignment at LSalAtl2s1222:82149..82639- (Lepeophtheirus salmonis)
ATGTCTCGTGGAATGAGTTGTAATTTAGATCTGAAGCTTAATCAATCCTA
TTCACAGTGTCCGGATGAATTTGGCAACGCATCATTCCTGAGTAATCCGA
CTCGGTTGGAACTTTTGATGTCCAGAGTTCAAACATTAGTTCAACAATCA
AATGAGCTGAGTAAAAATGTATTTTTTTGAGATTATAAAGAAACTCCTTT
AATTACAATTATGTTTCATGAATCTTTTTAATTTAGGAAATGGAAATGCT
TCAAGCTTTGAGAGCGACCCTTATATCCTGTGTTGAGGAAATGATTGCTG
CTATTGAGGCGGAAATAACAAAAAATCAAGACTTGAGATGTAATACAATT
AAAAATGCTCAGAAAATTATTCAGGATAGATTTCATTCGATTAAGCCTGA
CGAAGATGAACTCAAGGGGTTTTCATCAGAATTGCAACTTTTTATTCGGG
ATGTTGATACGTTTCAAGACTGCGTCCCTGGACGTAGATAA
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