EMLSAG00000001350, EMLSAG00000001350-684116 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001350
Unique NameEMLSAG00000001350-684116
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001350 vs. C. finmarchicus
Match: gi|592820902|gb|GAXK01133666.1| (TSA: Calanus finmarchicus comp738690_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 7.140e-1
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 0
Query:   86 PRRCMRYFCHEGRLIWTFNWQSRNA 110
            PR C++YF   G  I +FN+   NA
Sbjct:   91 PRGCLQYFTESGGTIQSFNYDGVNA 165          
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9")

HSP 1 Score: 260.381 bits (664), Expect = 2.765e-90
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
            MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN
Sbjct:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127          
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5")

HSP 1 Score: 256.914 bits (655), Expect = 6.491e-89
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0
Query:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
            MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYY RYG RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN
Sbjct:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGTRCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127          
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4")

HSP 1 Score: 87.4261 bits (215), Expect = 6.414e-23
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGA--RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQ 106
            MK+ALFLLALSIL VN A  K K C +N ++Y  G        CC +M C SNG   Y  YG   +C  C DP+   + I  GQYGR + C+RYFC  GR + T +++
Sbjct:    1 MKVALFLLALSILVVNGA-SKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFK 107          
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2")

HSP 1 Score: 80.4925 bits (197), Expect = 3.532e-20
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYG--ARCNCCRDPYYSL-SLIRSGQYGRPRRCMRYFCHEGRLIWTFNW 105
            MK  + L      A  DA  K   C++N + Y  G+++ +F+ CC+QM C   G +Y    G   +C CCRDPY S  SLI++G YG+ +   R+FC +GRL+ TF++
Sbjct:    2 MKFVMLLSLAMAXAFVDA--KPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107          
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9")

HSP 1 Score: 68.5514 bits (166), Expect = 1.231e-15
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 0
Query:    5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGAR---CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109
            + LL L+ +A      ++  C FN + Y  G+++ +F  CC QM C   G    T    +   C CCRDPY     LI++G YGR +   R+FC +G+L+ TF++   N
Sbjct:    4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001350 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001350 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592820902|gb|GAXK01133666.1|7.140e-144.00TSA: Calanus finmarchicus comp738690_c0_seq3 trans... [more]
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BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000013502.765e-90100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s122:13129... [more]
EMLSAP000000052256.491e-8998.43pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:... [more]
EMLSAP000000052266.414e-2345.37pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:... [more]
EMLSAP000000083713.532e-2038.89pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508... [more]
EMLSAP000000013441.231e-1534.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:1191... [more]
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BLAST of EMLSAG00000001350 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001350 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001350 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001350 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s122supercontigLSalAtl2s122:1312921..1313365 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s122-augustus-gene-12.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001350 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001350EMLSAT00000001350-697197Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s122:1312921..1313365-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001350-684116 ID=EMLSAG00000001350-684116|Name=EMLSAG00000001350|organism=Lepeophtheirus salmonis|type=gene|length=445bp|location=Sequence derived from alignment at LSalAtl2s122:1312921..1313365- (Lepeophtheirus salmonis)
ATGAAATTAGCTTTATTTCTCTTGGCTCTGTCCATTTTGGCTGTGAATGA TGCAGTTGGAAAGACGAAGAAGTGCTATTTCAATCGAAGATCCTATAATT CTGGTGCTTTGGTTAGGTCTTTTTATCAATGTTGTATCCAAATGAAATGT GGATCGAACGGAAAAGTTTAGTAAGAATAAGTCAGATTAATCTAAAACTA TTCAATTTTATTTTTGCAAATGTCATTATAGTTATACCAGGTATGGAGCT AGATGCAATTGCTGTCGCGATCCTTATTACTCGCTATCATTGATCCGGAG TGGACAATATGGAAGACCAAGACGATGTATGAGATATTTCTGTCATGAAG GGAGACTCATTTGGACTTTCAATTGGCAGTCAAGAAACGCTGGAGAATGT TCGACCCGAAGAATCGATTCAAGCAGAGAAAATTTGTTAAATTAA
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