EMLSAG00000001358, EMLSAG00000001358-684124 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001358
Unique NameEMLSAG00000001358-684124
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001358 vs. L. salmonis peptides
Match: EMLSAP00000001358 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:714803:716117:1 gene:EMLSAG00000001358 transcript:EMLSAT00000001358 description:"maker-LSalAtl2s122-snap-gene-7.9")

HSP 1 Score: 281.182 bits (718), Expect = 3.448e-98
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 
Query:    1 MKLLYPDSGKKRSDIYLNGHRLTPWIYHLSRGGLRVPSDYFSKYCVVYSLKDCEVFAQKLKEFNLPLLDRHPKVIERFCQVLEDSFGGKYGKPVLNLFAKTRTMIRIRYINAQLEFNTGGSEKIRGKKQICQFQV 135
            MKLLYPDSGKKRSDIYLNGHRLTPWIYHLSRGGLRVPSDYFSKYCVVYSLKDCEVFAQKLKEFNLPLLDRHPKVIERFCQVLEDSFGGKYGKPVLNLFAKTRTMIRIRYINAQLEFNTGGSEKIRGKKQICQFQV
Sbjct:    1 MKLLYPDSGKKRSDIYLNGHRLTPWIYHLSRGGLRVPSDYFSKYCVVYSLKDCEVFAQKLKEFNLPLLDRHPKVIERFCQVLEDSFGGKYGKPVLNLFAKTRTMIRIRYINAQLEFNTGGSEKIRGKKQICQFQV 135
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BLAST of EMLSAG00000001358 vs. L. salmonis peptides
Match: EMLSAP00000008926 (pep:novel supercontig:LSalAtl2s:LSalAtl2s555:158054:228428:1 gene:EMLSAG00000008926 transcript:EMLSAT00000008926 description:"maker-LSalAtl2s555-augustus-gene-1.35")

HSP 1 Score: 134.035 bits (336), Expect = 2.365e-37
Identity = 65/88 (73.86%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:    1 MKLLYPDSGKKRSDIYLNGHRLTPWIYHLSRGGLRVPSDYFSKYCVVYSLKDCEVFAQKLKEFNLPLLDRHPKVIERFCQVLEDSFGG 88
            MKLLYPD GKK SDIYLN H  TPWIYHLSRGGL +PSDYF        LKDCEVF QK KEF+  LLD HPKV+ERFC VLEDSFGG
Sbjct:  545 MKLLYPDLGKKTSDIYLNDHGRTPWIYHLSRGGLMMPSDYF--------LKDCEVFVQKFKEFHFSLLDHHPKVMERFCLVLEDSFGG 624
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001358 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001358 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001358 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000013583.448e-98100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s122:71480... [more]
EMLSAP000000089262.365e-3773.86pep:novel supercontig:LSalAtl2s:LSalAtl2s555:15805... [more]
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BLAST of EMLSAG00000001358 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001358 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001358 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001358 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s122supercontigLSalAtl2s122:714803..716117 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s122-snap-gene-7.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001358 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001358EMLSAT00000001358-697205Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s122:714803..716117+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001358-684124 ID=EMLSAG00000001358-684124|Name=EMLSAG00000001358|organism=Lepeophtheirus salmonis|type=gene|length=1315bp|location=Sequence derived from alignment at LSalAtl2s122:714803..716117+ (Lepeophtheirus salmonis)
TAAAAAGTTCCCGAAAAATTTGCATGAATCAACATTCTCTCAAACTCTCA
GCAGTGTCGATAATCAAGGTAAAGACCAAGTAGATTTTATTTTACCTCGT
TCCAGGAGAGAAATGAGGAGGCAAAACAAACAAATAGTAACCTTTATTGA
TAAAGGAACCGGAGCAACAGAATAAGGATATTGGGATACAGACAGAACAT
TCCCTTTTTCTGGAAAATACTGATCATCTCAAAGCAGAATTTAAGAAAAC
GAAAGCTGATTTATGTAAACAAAAAGTCAAGGTAAACATTCTCACAAAGA
AACTCGAGTGACTTGGAGGTCATTGGGAGGGGAAATAAGAGTCAATTGCC
ATGGCAGAGAGGMATGCGAGTTTCAATCAAGTCAACTCGAGCCTTGTACC
ATGATTTGATTTCTTATGGTCCTCTTTCTTTCATTTTGATGTCCAGAACT
AATCAAGATTGCCTTGAAATTTTTTTTACCCGTTTGAGAAGTGCTGGTGG
AGATGATGATCACCCTGGAGCCGTTGGAGCAATGAAAAGGATGATAATTC
TGGAATTTGGAAAAAATTGTGAAACTTTGATGAGCAATCCGGCCCCTTCA
GATTGAAAAAGAATATGACATTTATAGAATTGAGGATGAAGAGGAAAAAT
AATCCGTAACAAAGCAAATCACTGGAGACATCTTAGATATCACAATTGGT
GAAAAAAGCTGTTCAGAATTTGAATTTACGTTTGATATCCCTCATTAAGT
TCATGTGGATTTTGCAATAAACCATCAACTTGATCGGTTCAAAAAATGAG
ATCTCAACTTTCAGGGGCTCAGTTATGTATCGGGTTTTATTGCCCACAAG
ATGAAACTTTTATATCCGGATTCGGGGAAAAAGAGAAGTGACATATATTT
GAATGGTCATAGACTGACACCATGGATATATCATTTGTCTAGAGGAGGAC
TGAGGGTGCCATCTGATTATTTTTCAAAATATTGTGTAGTTTATTCTTTA
AAAGATTGTGAAGTTTTCGCCCAGAAGCTCAAAGAATTCAATTTACCTCT
ATTAGATCGTCATCCCAAAGTAATCGAACGTTTTTGCCAAGTTTTGGAAG
ACTCTTTTGGAGGTAAGTATGGCAAGCCTGTTCTGAATCTCTTCGCCAAG
ACAAGGACAATGATACGAATAAGATACATCAATGCACAATTAGAATTTAA
TACTGGAGGGAGTGAAAAAATAAGAGGAAAAAAGCAAATCTGCCAATTTC
AAGTTTAATTATAATTTAACCAAATATTCAATATAATATTAATTATCACC
AAATAGATTATTTTA
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