EMLSAG00000001552, EMLSAG00000001552-684318 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000001552 (pep:novel supercontig:LSalAtl2s:LSalAtl2s126:27302:27668:1 gene:EMLSAG00000001552 transcript:EMLSAT00000001552 description:"maker-LSalAtl2s126-snap-gene-0.3") HSP 1 Score: 127.487 bits (319), Expect = 5.151e-40 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query: 1 MFFVCLTMIRNKLVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAENVLKIH 62
MFFVCLTMIRNKLVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAENVLKIH
Sbjct: 1 MFFVCLTMIRNKLVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAENVLKIH 62
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000012244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8920:373:1847:1 gene:EMLSAG00000012244 transcript:EMLSAT00000012244 description:"maker-LSalAtl2s8920-snap-gene-0.2") HSP 1 Score: 76.2554 bits (186), Expect = 2.899e-18 Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0
Query: 1 MFFVCLTMIRNKL-----------------VVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAENV 58
MFFV LTMIRNKL VV+AL +I NFED RVGYIDTTKPRF RQ+LLKNKYF E
Sbjct: 132 MFFVFLTMIRNKLDHSCRPNALYMFIGRTLVVQALCDIANFEDVRVGYIDTTKPRFNRQILLKNKYFFDCNCEEC 206
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000000651 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11005:51:981:-1 gene:EMLSAG00000000651 transcript:EMLSAT00000000651 description:"maker-LSalAtl2s11005-snap-gene-0.1") HSP 1 Score: 59.3066 bits (142), Expect = 1.819e-12 Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0
Query: 9 IRNKLVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAE 56
I LVVKA+ +I NFE+ RVGYI TKPRF RQ+LLKNKYF E
Sbjct: 201 IGRTLVVKAMCDIANFENVRVGYIVITKPRFNRQILLKNKYFFDCNCE 248
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000011135 (pep:novel supercontig:LSalAtl2s:LSalAtl2s756:323617:324153:-1 gene:EMLSAG00000011135 transcript:EMLSAT00000011135 description:"maker-LSalAtl2s756-snap-gene-2.15") HSP 1 Score: 55.4546 bits (132), Expect = 9.587e-12 Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
Query: 8 MIRNKLVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAENV 58
+I ++VVKAL +I NF+D RVGYIDTT+PR R+ LK++YF +
Sbjct: 2 LIGCRVVVKALCDIANFDDVRVGYIDTTQPRSMRRKFLKDQYFFYCNCQEC 52
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000001454 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:336907:338618:1 gene:EMLSAG00000001454 transcript:EMLSAT00000001454 description:"augustus_masked-LSalAtl2s1247-processed-gene-2.0") HSP 1 Score: 52.373 bits (124), Expect = 6.594e-10 Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 0
Query: 13 LVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAE 56
L VKAL EI NF+D RV Y+D +KPR RQ LLKN+YF E
Sbjct: 205 LXVKALCEIANFDDVRVAYVDMSKPRSIRQELLKNQYFFDCNCE 248
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000003017 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1710:87007:87459:1 gene:EMLSAG00000003017 transcript:EMLSAT00000003017 description:"augustus_masked-LSalAtl2s1710-processed-gene-0.0") HSP 1 Score: 48.9062 bits (115), Expect = 2.712e-9 Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0
Query: 9 IRNKLVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAE 56
I LVVKA+ +I NF++ R+ Y+D T+ R RQ LKNKYF E
Sbjct: 63 IGRTLVVKAMCDIANFDEVRISYVDITQTRTMRQKFLKNKYFFDCNCE 110
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Match: EMLSAP00000003016 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1710:69764:70769:1 gene:EMLSAG00000003016 transcript:EMLSAT00000003016 description:"maker-LSalAtl2s1710-snap-gene-0.6") HSP 1 Score: 47.3654 bits (111), Expect = 3.570e-8 Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 0
Query: 13 LVVKALFEIPNFEDGRVGYIDTTKPRFKRQMLLKNKYFLIVTAE 56
LVVKA+ +I NF++ R+ Y+D T+ R RQ LKN+YF E
Sbjct: 28 LVVKAMCDIANFDEVRISYVDITQTRTMRQKFLKNQYFFDCNCE 71 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001552 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001552 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 0
BLAST of EMLSAG00000001552 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 7
BLAST of EMLSAG00000001552 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001552 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001552 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001552 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s126:27302..27668+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001552-684318 ID=EMLSAG00000001552-684318|Name=EMLSAG00000001552|organism=Lepeophtheirus salmonis|type=gene|length=367bp|location=Sequence derived from alignment at LSalAtl2s126:27302..27668+ (Lepeophtheirus salmonis)back to top Add to Basket
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