EMLSAG00000001553, EMLSAG00000001553-684319 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001553
Unique NameEMLSAG00000001553-684319
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Match: EMLSAP00000001553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s126:27763:28306:1 gene:EMLSAG00000001553 transcript:EMLSAT00000001553 description:"maker-LSalAtl2s126-snap-gene-0.4")

HSP 1 Score: 254.603 bits (649), Expect = 5.517e-88
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 MIEFKIFKKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQLTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFNDVCLMYEMANDK 127
            MIEFKIFKKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQLTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFNDVCLMYEMANDK
Sbjct:    1 MIEFKIFKKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQLTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFNDVCLMYEMANDK 127          
BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Match: EMLSAP00000012244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8920:373:1847:1 gene:EMLSAG00000012244 transcript:EMLSAT00000012244 description:"maker-LSalAtl2s8920-snap-gene-0.2")

HSP 1 Score: 169.088 bits (427), Expect = 1.606e-51
Identity = 87/124 (70.16%), Postives = 103/124 (83.06%), Query Frame = 0
Query:    8 KKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQ----LTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFNDVCLMYEMANDK 127
            ++VN K CLLFKEV +YFHPF YV F YCH++++    LT  ++QILHE+I+LA +KYVYA DILMP+YLINLM VLIS NELKSLPSLLLETKT MDVI+PKSHSMF+  N V LM+EMANDK
Sbjct:  258 EEVNVKTCLLFKEVFQYFHPFDYVAFNYCHELVRYDYLLTQNELQILHERIILAMRKYVYAYDILMPKYLINLMDVLISMNELKSLPSLLLETKTIMDVIYPKSHSMFEELNVVRLMFEMANDK 381          
BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Match: EMLSAP00000003016 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1710:69764:70769:1 gene:EMLSAG00000003016 transcript:EMLSAT00000003016 description:"maker-LSalAtl2s1710-snap-gene-0.6")

HSP 1 Score: 161.384 bits (407), Expect = 6.489e-50
Identity = 83/124 (66.94%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    8 KKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQ----LTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFNDVCLMYEMANDK 127
            ++VN K CLLFKEV +YFHPF YV F YCH++++    LT  ++QILHE+I+LA +KYVYA DILMP+ LINLM VLIS NELKSLPSLLLETKT MDVI+PKSHSMF+  N V LM++MA +K
Sbjct:  125 EEVNVKTCLLFKEVFQYFHPFDYVAFNYCHELVRYDYLLTQNELQILHERIILALRKYVYAYDILMPKXLINLMDVLISXNELKSLPSLLLETKTIMDVIYPKSHSMFEELNVVRLMFQMAKNK 248          
BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Match: EMLSAP00000002794 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1613:87683:89928:-1 gene:EMLSAG00000002794 transcript:EMLSAT00000002794 description:"snap_masked-LSalAtl2s1613-processed-gene-0.6")

HSP 1 Score: 130.183 bits (326), Expect = 3.502e-37
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 0
Query:    8 KKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQ----LTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFN 115
            K+V+AK+  L KEV KYFHPF YV F YC+ +L     LT+ ++QIL+E+ILLA +KYVY  DILM  +L+ LM +L+ KNELKSLPSLLLETKT MDVI+PK+HS++D  N
Sbjct:  201 KEVDAKSRSLLKEVFKYFHPFDYVAFYYCNALLSYKDLLTLNELQILNERILLALRKYVYDYDILMLPFLMYLMNILMKKNELKSLPSLLLETKTIMDVIYPKNHSLYDELN 312          
BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Match: EMLSAP00000003104 (pep:novel supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18")

HSP 1 Score: 92.4337 bits (228), Expect = 2.316e-22
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    8 KKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQLTII----QIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVI 103
            K++NAK CL F EVLKYFHPF YV + +C  ++    +    ++QIL+E+ +L  +KY    DI M +YL+NL+ +L+SK ELKS+P+LL E K  M+ I
Sbjct:  788 KEMNAKTCLYFVEVLKYFHPFDYVSYKFCDDLIARNDLIDNNKLQILYERNILTMRKYGCIYDIQMSEYLMNLIGILLSKQELKSVPNLLFEAKAIMEGI 887          
BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Match: EMLSAP00000007972 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4712:5322:5679:1 gene:EMLSAG00000007972 transcript:EMLSAT00000007972 description:"maker-LSalAtl2s4712-snap-gene-0.3")

HSP 1 Score: 71.2478 bits (173), Expect = 7.401e-17
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0
Query:    8 KKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQ----LTIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLIS 82
            K+V+AK+  L +E+ ++ HPF YV F YC+ +L     LT+ ++QIL+E ILLA +KYVY  DILM  +LI+LM +L+ 
Sbjct:   23 KEVDAKSRWLLEEMFQFLHPFDYVAFSYCNALLNCKGLLTLNELQILNEMILLALRKYVYDFDILMLPFLIHLMGILME 101          
BLAST of EMLSAG00000001553 vs. nr
Match: gi|225711848|gb|ACO11770.1| (SET and MYND domain-containing protein 3 [Lepeophtheirus salmonis])

HSP 1 Score: 108.997 bits (271), Expect = 1.277e-25
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 0
Query:    8 KKVNAKACLLFKEVLKYFHPFHYVVFIYCHQMLQL-----TIIQIQILHEKILLACKKYVYACDILMPQYLINLMVVLISKNELKSLPSLLLETKTAMDVIFPKSHSMFDTFNDVCLMYEMANDK 127
            KKVNAK  L FKEV KYFH F YV   YC++++ +        ++QI+ E+ILLA +KY    DI   + L+ LM++L++K ELKSLP+LLLETKT +D+I+P+SHS+F  FNDV LM++M  +K
Sbjct:  302 KKVNAKTSLYFKEVCKYFHSFDYVSLKYCNELIAIHRSNYNENELQIIFERILLAKRKYGCFYDIFTAECLMLLMMILLNKEELKSLPNLLLETKTVIDLIYPRSHSIFHEFNDVNLMFQMIKNK 426          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001553 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001553 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001553 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000015535.517e-88100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s126:27763... [more]
EMLSAP000000122441.606e-5170.16pep:novel supercontig:LSalAtl2s:LSalAtl2s8920:373:... [more]
EMLSAP000000030166.489e-5066.94pep:novel supercontig:LSalAtl2s:LSalAtl2s1710:6976... [more]
EMLSAP000000027943.502e-3760.71pep:novel supercontig:LSalAtl2s:LSalAtl2s1613:8768... [more]
EMLSAP000000031042.316e-2247.00pep:novel supercontig:LSalAtl2s:LSalAtl2s174:36423... [more]
EMLSAP000000079727.401e-1748.10pep:novel supercontig:LSalAtl2s:LSalAtl2s4712:5322... [more]
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BLAST of EMLSAG00000001553 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001553 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001553 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225711848|gb|ACO11770.1|1.277e-2551.20SET and MYND domain-containing protein 3 [Lepeopht... [more]
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BLAST of EMLSAG00000001553 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s126supercontigLSalAtl2s126:27763..28306 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s126-snap-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteSET and MYND domain-containing protein 3 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001553 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001553EMLSAT00000001553-697400Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s126:27763..28306+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001553-684319 ID=EMLSAG00000001553-684319|Name=EMLSAG00000001553|organism=Lepeophtheirus salmonis|type=gene|length=544bp|location=Sequence derived from alignment at LSalAtl2s126:27763..28306+ (Lepeophtheirus salmonis)
ATGATAGAATTTAAAATATTTAAAAGTATTTAATTTTATCCTATGAGGTT GATTTGTTTAAATATTATCAAATAAAATAAATTTGGATTTTGGAAGAAGT CAATGCGAAAGCTTGCCTGTTATTTAAAGAAGTGTTGAAGTATTTTCATC CCTTTCATTATGTAGTTTTCATATATTGCCATCAAATGCTACGTTATTAC AACAGTTTTTCCTTTTATATTTTGTAGAGACCCGAAATTGATGCTATTAG ATTTGATATCCTGTATAAATTTTTATATTAGAACTTACTATAATACAAAT ACAAATTTTGCATGAAAAAATTCTTTTGGCTTGTAAGAAGTACGTCTACG CCTGTGATATATTAATGCCTCAATATTTGATAAATCTTATGGTTGTACTT ATTTCTAAGAATGAATTAAAATCGTTACCTAGCTTATTGTTAGAAACTAA GACAGCAATGGATGTTATATTCCCAAAGAGCCATTCCATGTTTGATACAT TTAATGATGTATGTCTCATGTATGAAATGGCTAATGATAAATAA
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