EMLSAG00000001599, EMLSAG00000001599-684365 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001599
Unique NameEMLSAG00000001599-684365
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592876153|gb|GAXK01081424.1| (TSA: Calanus finmarchicus comp1099834_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.782e-3
Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 0 
Query:   74 ATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLL 133
            + M+ L G PY++GG    S+  T+ +++FI  +W  ++ + +  PRQ+   ++IP   L
Sbjct: 1174 SEMITLDGVPYIFGGNDGDSE--TDTVFRFINMAW--EKVEEMKAPRQNHVALSIPEEWL 1341
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592943211|gb|GAXK01015342.1| (TSA: Calanus finmarchicus comp630350_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 3.340e-2
Identity = 34/136 (25.00%), Postives = 57/136 (41.91%), Query Frame = 0 
Query:   13 LDKWSEANNMPEPIRFPKCS-----MKNEKNDLLIAGKYRG------DTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKT-NKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
            L KWS  +N+  P     CS      K+E+  ++++G Y        + F   + RW + G     + ++  A+MV L G P + GG H   +  T  + Y      W     + L + R++     +P  L P C
Sbjct: 3471 LSKWSSLSNLNTPRYLHACSQVLLDAKDEEVGVIVSGGYSDSYLNSTEIFYPSENRWDQSGS---MSVARQGASMVILDGKPTVLGGFHDYDKYPTITEQYDHALGFW-FPLKKKLKKGRRYFGVAAVPETLFPQC 3866
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592943212|gb|GAXK01015341.1| (TSA: Calanus finmarchicus comp630350_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 3.341e-2
Identity = 34/136 (25.00%), Postives = 57/136 (41.91%), Query Frame = 0 
Query:   13 LDKWSEANNMPEPIRFPKCS-----MKNEKNDLLIAGKYRG------DTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKT-NKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
            L KWS  +N+  P     CS      K+E+  ++++G Y        + F   + RW + G     + ++  A+MV L G P + GG H   +  T  + Y      W     + L + R++     +P  L P C
Sbjct: 3486 LSKWSSLSNLNTPRYLHACSQVLLDAKDEEVGVIVSGGYSDSYLNSTEIFYPSENRWDQSGS---MSVARQGASMVILDGKPTVLGGFHDYDKYPTITEQYDHALGFW-FPLKKKLKKGRRYFGVAAVPETLFPQC 3881
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592943213|gb|GAXK01015340.1| (TSA: Calanus finmarchicus comp630350_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 3.342e-2
Identity = 34/136 (25.00%), Postives = 57/136 (41.91%), Query Frame = 0 
Query:   13 LDKWSEANNMPEPIRFPKCS-----MKNEKNDLLIAGKYRG------DTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKT-NKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
            L KWS  +N+  P     CS      K+E+  ++++G Y        + F   + RW + G     + ++  A+MV L G P + GG H   +  T  + Y      W     + L + R++     +P  L P C
Sbjct: 3513 LSKWSSLSNLNTPRYLHACSQVLLDAKDEEVGVIVSGGYSDSYLNSTEIFYPSENRWDQSGS---MSVARQGASMVILDGKPTVLGGFHDYDKYPTITEQYDHALGFW-FPLKKKLKKGRRYFGVAAVPETLFPQC 3908
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592943214|gb|GAXK01015339.1| (TSA: Calanus finmarchicus comp630350_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 3.343e-2
Identity = 34/136 (25.00%), Postives = 57/136 (41.91%), Query Frame = 0 
Query:   13 LDKWSEANNMPEPIRFPKCS-----MKNEKNDLLIAGKYRG------DTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKT-NKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
            L KWS  +N+  P     CS      K+E+  ++++G Y        + F   + RW + G     + ++  A+MV L G P + GG H   +  T  + Y      W     + L + R++     +P  L P C
Sbjct: 3528 LSKWSSLSNLNTPRYLHACSQVLLDAKDEEVGVIVSGGYSDSYLNSTEIFYPSENRWDQSGS---MSVARQGASMVILDGKPTVLGGFHDYDKYPTITEQYDHALGFW-FPLKKKLKKGRRYFGVAAVPETLFPQC 3923
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592750681|gb|GAXK01203732.1| (TSA: Calanus finmarchicus comp384210_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 5.609e-2
Identity = 28/126 (22.22%), Postives = 56/126 (44.44%), Query Frame = 0 
Query:   16 WSEANNMPEPIRFPKC---SMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGIGELPATSQLFA--TMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
            WS+  ++P+P     C    +   +  ++  G   G+     D+   E+   ELP+ +       ++ ++G P ++  ++         I +F G SW + + + LS+ R      T+P HL+ GC
Sbjct:   62 WSDGPSLPKPRYGHTCLLTEVAGSRGVMVAGGALTGNEVNFLDLGTMEWK--ELPSLNYKIDGHKLILVEGIPTIFSWEN---------IEQFDGKSWTLQKFR-LSQSRSAFTVTTVPGHLIRGC 403
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592954759|gb|GAXK01003794.1| (TSA: Calanus finmarchicus comp455910_c6_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.418e-1
Identity = 19/68 (27.94%), Postives = 33/68 (48.53%), Query Frame = 0 
Query:   71 QLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSR--PRQHLFPVTIPTHLLPGC 136
            +L  +MV + G P L GG ++I +         +  S   DE +++ +   R H   + +P+ LLP C
Sbjct:  116 RLAPSMVIIAGRPQLSGGHYEIGRRNEMFPDHVLEYSLEEDEWRAVGQIEGRSHHVALAVPSKLLPAC 319
[Close]
BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592954760|gb|GAXK01003793.1| (TSA: Calanus finmarchicus comp455910_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.121e-1
Identity = 19/68 (27.94%), Postives = 33/68 (48.53%), Query Frame = 0 
Query:   71 QLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSR--PRQHLFPVTIPTHLLPGC 136
            +L  +MV + G P L GG ++I +         +  S   DE +++ +   R H   + +P+ LLP C
Sbjct:  284 RLAPSMVIIAGRPQLSGGHYEIGRRNEMFPDHVLEYSLEEDEWRAVGQIEGRSHHVALAVPSKLLPAC 487
[Close]
BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592814004|gb|GAXK01140564.1| (TSA: Calanus finmarchicus comp476376_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.145e+0
Identity = 28/126 (22.22%), Postives = 51/126 (40.48%), Query Frame = 0 
Query:   14 DKWSEANNMPEPIRFPKCSMKNEKND--LLIAGKYRGDTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGP--YLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPG 135
            ++W+   N  E    P C      N   +++AG Y+  T  + ++   E+ IG          +MV +       L GG    S E  +++ +   +    +   SL +PR +   +T+P   LP 
Sbjct: 2689 NRWTRLPNSLEKRSGPSCGFLRTSNGSYIVLAGGYKSSTSEILNLDTKEWSIGPDIGKDLYGGSMVSVMDEQELILIGGY---SSEAMSQVLRMNSSMSSWEPAGSLIKPRFNTVAMTVPIENLPA 3057
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Match: gi|592750680|gb|GAXK01203733.1| (TSA: Calanus finmarchicus comp384210_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.247e+0
Identity = 26/121 (21.49%), Postives = 53/121 (43.80%), Query Frame = 0 
Query:   21 NMPEPIRFPKC---SMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGIGELPATSQLFA--TMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
            ++P+P     C    +   +  ++  G   G+     D+   E+   ELP+ +       ++ ++G P ++  ++         I +F G SW + + + LS+ R      T+P HL+ GC
Sbjct:   62 SLPKPRYGHTCLLTEVAGSRGVMVAGGALTGNEVNFLDLGTMEWK--ELPSLNYKIDGHKLILVEGIPTIFSWEN---------IEQFDGKSWTLQKFR-LSQSRSAFTVTTVPGHLIRGC 388
[Close]
BLAST of EMLSAG00000001599 vs. L. salmonis peptides
Match: EMLSAP00000001599 (pep:novel supercontig:LSalAtl2s:LSalAtl2s127:34427:36005:1 gene:EMLSAG00000001599 transcript:EMLSAT00000001599 description:"maker-LSalAtl2s127-snap-gene-0.15")

HSP 1 Score: 289.656 bits (740), Expect = 1.824e-101
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MTWTAGPYLPVGLDKWSEANNMPEPIRFPKCSMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGCE 137
            MTWTAGPYLPVGLDKWSEANNMPEPIRFPKCSMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGCE
Sbjct:    1 MTWTAGPYLPVGLDKWSEANNMPEPIRFPKCSMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWIMDETQSLSRPRQHLFPVTIPTHLLPGCE 137
[Close]
BLAST of EMLSAG00000001599 vs. L. salmonis peptides
Match: EMLSAP00000011698 (pep:novel supercontig:LSalAtl2s:LSalAtl2s812:214158:217695:1 gene:EMLSAG00000011698 transcript:EMLSAT00000011698 description:"maker-LSalAtl2s812-snap-gene-1.100")

HSP 1 Score: 53.1434 bits (126), Expect = 3.662e-9
Identity = 33/125 (26.40%), Postives = 59/125 (47.20%), Query Frame = 0 
Query:   15 KWSEANNMPEPIRFPKCSMKNEKNDLLIAGKYRGDTFRMKDMRWTEY-GIGELPATSQLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTS--WIMDETQSLSRPRQHLFPVTIPTHLLPGC 136
             W +   MP P     CS+ N++ D+L++G   G  +      W      G LP  S+   +M Y +GG  L+GG     +  +N +++F  +   WI  +  SL + R+++  +++P H    C
Sbjct:  446 SWRDLPPMPHPTNKTLCSIMNDEGDVLLSGIDHGFIYNSTTNTWIHLPPGGALPMESRFGGSMAYAEGGVRLFGGSFD-PRGSSNYVFRFSESDLKWIQRD-GSLMKDRKNVLAISVPLHKFRQC 568
[Close]
BLAST of EMLSAG00000001599 vs. L. salmonis peptides
Match: EMLSAP00000009395 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5:30197:50078:-1 gene:EMLSAG00000009395 transcript:EMLSAT00000009395 description:"maker-LSalAtl2s5-snap-gene-0.5")

HSP 1 Score: 51.6026 bits (122), Expect = 1.285e-8
Identity = 34/97 (35.05%), Postives = 45/97 (46.39%), Query Frame = 0 
Query:   14 DKWSEANNMPEPIRFPKCSMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGI-GELPATSQLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWI 109
            D W+E   MP  + FP+CS   +K D+LIA   R  TF +   +W E G  G L    +L      +  G YL GG+         + YKF G  WI
Sbjct:  436 DTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWLEVGRPGRLHTDGELIFGGEDV--GTYLIGGR---------RTYKFTGEMWI 521
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001599 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001599 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592876153|gb|GAXK01081424.1|1.782e-330.00TSA: Calanus finmarchicus comp1099834_c0_seq1 tran... [more]
gi|592943211|gb|GAXK01015342.1|3.340e-225.00TSA: Calanus finmarchicus comp630350_c0_seq4 trans... [more]
gi|592943212|gb|GAXK01015341.1|3.341e-225.00TSA: Calanus finmarchicus comp630350_c0_seq3 trans... [more]
gi|592943213|gb|GAXK01015340.1|3.342e-225.00TSA: Calanus finmarchicus comp630350_c0_seq2 trans... [more]
gi|592943214|gb|GAXK01015339.1|3.343e-225.00TSA: Calanus finmarchicus comp630350_c0_seq1 trans... [more]
gi|592750681|gb|GAXK01203732.1|5.609e-222.22TSA: Calanus finmarchicus comp384210_c0_seq1 trans... [more]
gi|592954759|gb|GAXK01003794.1|4.418e-127.94TSA: Calanus finmarchicus comp455910_c6_seq2 trans... [more]
gi|592954760|gb|GAXK01003793.1|5.121e-127.94TSA: Calanus finmarchicus comp455910_c6_seq1 trans... [more]
gi|592814004|gb|GAXK01140564.1|2.145e+022.22TSA: Calanus finmarchicus comp476376_c1_seq1 trans... [more]
gi|592750680|gb|GAXK01203733.1|2.247e+021.49TSA: Calanus finmarchicus comp384210_c0_seq2 trans... [more]
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BLAST of EMLSAG00000001599 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000015991.824e-101100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s127:34427... [more]
EMLSAP000000116983.662e-926.40pep:novel supercontig:LSalAtl2s:LSalAtl2s812:21415... [more]
EMLSAP000000093951.285e-835.05pep:novel supercontig:LSalAtl2s:LSalAtl2s5:30197:5... [more]
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BLAST of EMLSAG00000001599 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001599 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001599 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001599 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s127supercontigLSalAtl2s127:34427..36005 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s127-snap-gene-0.15
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001599 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001599EMLSAT00000001599-697446Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s127:34427..36005+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001599-684365 ID=EMLSAG00000001599-684365|Name=EMLSAG00000001599|organism=Lepeophtheirus salmonis|type=gene|length=1579bp|location=Sequence derived from alignment at LSalAtl2s127:34427..36005+ (Lepeophtheirus salmonis)
ATGACTTGGACAGCGGGCCCTTACCTTCCAGTGGGACTTGGTGATCATTG
TATGGCTCAAATTAATTCAACTCATACCCTCATTGCAGGGGGCTTTACTT
TAGAAGAAAATCATCCAATGCCCTCACAAAAAACGTGGATATATGATTGG
ACAAATGGTTTGTAATAGTGTTGTCAAGATACCAGCTGTGCCCAATTATA
TTTGCATGGAGGGGAGGGGGGAATTATATACTAGTGACGTAAGAGTTACA
CAATCTTACACTTTTATGGGATAAATATTACACTGATGGTTCCGGCACCA
CTATACGATACCGAATTTTCCTACTGGTTCCCGTGCTCCAATTGGTATCA
AATTTTCAATATTTTTTGCCTAAATAATGAACAAAAAGAACCACTTATAT
ACATTTACAGGGGCGTAAATGTACCGGGAACAGGGGAACACGGTCGAAAA
ATTCAAGAATTTTTAAATAACATACATTTTTGATTTTCTTGGGTCTTTTT
AGCCTTGCTCAGAAATTTACATAAACTCTGGGTTCAAATACTAATAAATA
CCCTTTTAAATGATCCAATATTCCCGTACTAGGAGAGTTTGGGCCGGTAT
TAGGATTTTTCTTTTGGGTGTAGGATATTTATATAAAATTTCCCAACCGA
TGTCCAATTTTTCCCCACAGATATTACATTTTTTCTGTCTCTATAAAATG
ACTTTTTTGTGTAAGGAAATAAAAAAGGTATCTTTATTTTTTTAAAAAGG
CCTTTACTAATAAATTTTTTGAAATATTTATCAAATGACATTCTTTTTTT
TTTTTAATGTTGTTTTTTAAATGACCTTTTCTAGAAAAAGTTCACTTTTC
GGGAGCTTCTTTATAAAAAATTATTTTATTTGTTCAAAGGGGCCTTCCAA
TTTTTTTTTTTCTTTTTGGAGAACTAATATAAGAAATATGTTTTAAGTCA
CTGTATTAATAATCAATAAAAAAACCGACTTTTATAAATCCTTGAGGGAC
GTGAGGTCACATAAACTCGTGGCATAATCAACAACCCTATTTTATCTTCA
TTAAATGATATTAAAAAATCCCTGTTCTCTATTTCCTCAGATAAATGGTC
GGAAGCAAATAATATGCCAGAGCCTATACGATTCCCTAAATGCTCAATGA
AGAATGAAAAAAATGACTTATTGATTGCTGGGAAATATAGAGGAGACACA
TTTCGAATGAAAGATATGAGATGGACGGAATATGGAATCGGTGAATTACC
TGCAACATCACAATTATTTGCAACTATGGTCTATCTTAAAGGAGGTCCCT
ATCTCTATGGCGGGCAACATCAAATAAGCCAGGAAAAAACTAACAAAATA
TATAAATTTATTGGAACATCTTGGATCATGGATGAGACACAATCTCTGTC
TAGACCAAGGCAACATTTATTTCCAGTCACTATTCCAACACATTTACTGC
CTGGGTGTGAATAAACTTTCCATATTTAGACGAATAATGAAAATATGTTG
ATACATAATGTAAAATAAGGTTAAAAAGATGTAGTATGATAAAAAATGTT
AAACGAATAAAGAATATGCGAACACTGGT
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