EMLSAG00000001927, EMLSAG00000001927-684693 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001927
Unique NameEMLSAG00000001927-684693
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001927 vs. C. finmarchicus
Match: gi|592759188|gb|GAXK01195225.1| (TSA: Calanus finmarchicus comp88114_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.464e-2
Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 0 
Query:    1 MLLKKIGINLPRDRSTRFLRIPKDLSIDHILIVHKKIA 38
            ++L K+G +LP D    + RIP   S DHI  V  KI 
Sbjct: 4280 LMLHKLGFHLPADVGKVYPRIPHFWSADHIFTVASKIG 4393
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BLAST of EMLSAG00000001927 vs. L. salmonis peptides
Match: EMLSAP00000001927 (pep:novel supercontig:LSalAtl2s:LSalAtl2s13364:254:800:-1 gene:EMLSAG00000001927 transcript:EMLSAT00000001927 description:"maker-LSalAtl2s13364-augustus-gene-0.2")

HSP 1 Score: 219.55 bits (558), Expect = 8.556e-75
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MLLKKIGINLPRDRSTRFLRIPKDLSIDHILIVHKKIASSHDVTSEGKFADANRQIANFAKNAKRALIAEIGSQRGDSENIEDNSHIADENMDFSSLPSSEKVYVEEIE 109
            MLLKKIGINLPRDRSTRFLRIPKDLSIDHILIVHKKIASSHDVTSEGKFADANRQIANFAKNAKRALIAEIGSQRGDSENIEDNSHIADENMDFSSLPSSEKVYVEEIE
Sbjct:    1 MLLKKIGINLPRDRSTRFLRIPKDLSIDHILIVHKKIASSHDVTSEGKFADANRQIANFAKNAKRALIAEIGSQRGDSENIEDNSHIADENMDFSSLPSSEKVYVEEIE 109
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BLAST of EMLSAG00000001927 vs. L. salmonis peptides
Match: EMLSAP00000005343 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2880:1896:3521:1 gene:EMLSAG00000005343 transcript:EMLSAT00000005343 description:"maker-LSalAtl2s2880-augustus-gene-0.5")

HSP 1 Score: 100.908 bits (250), Expect = 1.722e-26
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0 
Query:    1 MLLKKIGINLPRDRSTRFLRIPKDLSIDHILIVHKKIASSHDVTSEGKFADANRQIANFAK 61
            MLLKKIGI LP DR TRF RIP D SIDH+L +HKK+A SHDVT+EGKFA AN+QIANF K
Sbjct:  330 MLLKKIGIYLPADRQTRFPRIPNDWSIDHLLNIHKKLACSHDVTTEGKFAHANKQIANFTK 390

HSP 2 Score: 63.929 bits (154), Expect = 3.310e-13
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0 
Query:   60 AKNAKRALIAEIGSQRGDSENIEDNSHIADENMDFSSLPSSEKVYVEEIE 109
            + +A R+LIAE+ SQRG+SE+ +DNS I DEN+ F S P SEKVY+EEIE
Sbjct:  202 SSDATRSLIAELDSQRGESESGQDNSPIVDENVGFPSTPFSEKVYMEEIE 251
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BLAST of EMLSAG00000001927 vs. L. salmonis peptides
Match: EMLSAP00000007866 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4623:1701:4826:-1 gene:EMLSAG00000007866 transcript:EMLSAT00000007866 description:"maker-LSalAtl2s4623-augustus-gene-0.5")

HSP 1 Score: 97.0561 bits (240), Expect = 1.615e-24
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0 
Query:    1 MLLKKIGINLPRDRSTRFLRIPKDLSIDHILIVHKKIASSHDVTSEGKFADANRQIANFAK 61
            MLLKKIGINLP DRSTRF RIPKD SIDH+L +HKK+ SS DVTSE K A AN+QIA FAK
Sbjct:  536 MLLKKIGINLPTDRSTRFPRIPKDWSIDHLLTIHKKLDSSDDVTSEEKLAHANKQIAKFAK 596

HSP 2 Score: 50.0618 bits (118), Expect = 2.657e-8
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:   60 AKNAKRALIAEIGSQRGDSENIEDNSHIADENMDFSSLPSSEKVYVEEIE 109
            + +A R  IAE+ S+RG+SE+  DNS I D     SS PS+EKVYVEEI+
Sbjct:  413 SSDATRCFIAELDSKRGESESGNDNSKIWD-----SSTPSTEKVYVEEIK 457
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001927 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001927 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592759188|gb|GAXK01195225.1|1.464e-242.11TSA: Calanus finmarchicus comp88114_c0_seq1 transc... [more]
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BLAST of EMLSAG00000001927 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000019278.556e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s13364:254... [more]
EMLSAP000000053431.722e-2675.41pep:novel supercontig:LSalAtl2s:LSalAtl2s2880:1896... [more]
EMLSAP000000078661.615e-2477.05pep:novel supercontig:LSalAtl2s:LSalAtl2s4623:1701... [more]
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BLAST of EMLSAG00000001927 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001927 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001927 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001927 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s13364supercontigLSalAtl2s13364:254..800 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s13364-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001927 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001927EMLSAT00000001927-697774Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s13364:254..800-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001927-684693 ID=EMLSAG00000001927-684693|Name=EMLSAG00000001927|organism=Lepeophtheirus salmonis|type=gene|length=547bp|location=Sequence derived from alignment at LSalAtl2s13364:254..800- (Lepeophtheirus salmonis)
ATGCTTCTCAAGAAAATTGGGATCAATCTACCCAGAGACAGAAGTACACG
TTTCCTTCGGATACCAAAGGACTTGTCAATTGATCATATACTAATTGTTC
ATAAAAAAATTGCTTCTAGTCATGATGTAACCTCAGAGGGAAAATTTGCA
GATGCTAACAGACAAATTGCAAATTTTGCAAAGTAATATTATTTTGACTT
GTGTCTTCCCGAATATTCACACATTCTTATTTATTCTATTCTAGGCTTAA
CTTCAAAATATAAAAATATGGAACAAAGGTCGTCTATAAACGTAATTTAT
TTGTGTTTTTAAATGTTTATTGTTCGTAGAAAGTTAGTGTGCACATGCTT
ATGCTAACCTCTCAAATTCACTAAATGTTATTTGTCTATAATTTGCATCA
AGAAATGCAAAACGGGCTCTTATTGCTGAGATTGGCTCACAAAGAGGAGA
TTCAGAGAATATTGAAGATAATTCGCATATTGCGGATGAAAACATGGATT
TTTCTTCTCTACCATCCTCAGAAAAAGTATATGTGGAAGAAATTGAA
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