EMLSAG00000002072, EMLSAG00000002072-684838 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002072
Unique NameEMLSAG00000002072-684838
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002072 vs. L. salmonis peptides
Match: EMLSAP00000002072 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1386:21225:21705:-1 gene:EMLSAG00000002072 transcript:EMLSAT00000002072 description:"maker-LSalAtl2s1386-snap-gene-0.5")

HSP 1 Score: 255.758 bits (652), Expect = 1.319e-88
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MTELGISEDVIKVYIQGILATLNIFYTPTPFTYVITGKDPRNKTFGFPIRKYQQQFEPVDIFEQTYWYMSYYTNNTLQRFIYKEHDIETLFNTMKMDITEMGFLNFSVQAPNFSQKAFTLFHKL 124
            MTELGISEDVIKVYIQGILATLNIFYTPTPFTYVITGKDPRNKTFGFPIRKYQQQFEPVDIFEQTYWYMSYYTNNTLQRFIYKEHDIETLFNTMKMDITEMGFLNFSVQAPNFSQKAFTLFHKL
Sbjct:    1 MTELGISEDVIKVYIQGILATLNIFYTPTPFTYVITGKDPRNKTFGFPIRKYQQQFEPVDIFEQTYWYMSYYTNNTLQRFIYKEHDIETLFNTMKMDITEMGFLNFSVQAPNFSQKAFTLFHKL 124
[Close]
BLAST of EMLSAG00000002072 vs. L. salmonis peptides
Match: EMLSAP00000008241 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4989:1444:2126:-1 gene:EMLSAG00000008241 transcript:EMLSAT00000008241 description:"maker-LSalAtl2s4989-augustus-gene-0.2")

HSP 1 Score: 212.616 bits (540), Expect = 5.748e-71
Identity = 104/124 (83.87%), Postives = 108/124 (87.10%), Query Frame = 0 
Query:    1 MTELGISEDVIKVYIQGILATLNIFYTPTPFTYVITGKDPRNKTFGFPIRKYQQQFEPVDIFEQTYWYMSYYTNNTLQRFIYKEHDIETLFNTMKMDITEMGFLNFSVQAPNFSQKAFTLFHKL 124
            MTELGISEDVIKVYIQGILATLNIFYTPT FTY ITG DPR+KTFGF IRK Q+Q EPVDIF +TYW +S YTN TLQ FIYKE DIE  F TMKMDITEMGFL FSVQAPNFSQKAFTLFHKL
Sbjct:   46 MTELGISEDVIKVYIQGILATLNIFYTPTAFTYAITGNDPRSKTFGFLIRKNQEQLEPVDIFGKTYWSLSNYTNKTLQMFIYKEEDIEASFITMKMDITEMGFLKFSVQAPNFSQKAFTLFHKL 169
[Close]
BLAST of EMLSAG00000002072 vs. L. salmonis peptides
Match: EMLSAP00000007695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203:6885:-1 gene:EMLSAG00000007695 transcript:EMLSAT00000007695 description:"maker-LSalAtl2s4487-augustus-gene-0.1")

HSP 1 Score: 210.305 bits (534), Expect = 5.407e-70
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0 
Query:    1 MTELGISEDVIKVYIQGILATLNIFYTPTPFTYVITGKDPRNKTFGFPIRKYQQQFEPVDIFEQTYWYMSYYTNNTLQRFIYKEHDIETLFNTMKMDITEMGFLNFSVQAPNFSQKAFTLFHKL 124
            MTELGISEDVIKVYIQGILATLNIFYTPT FTY ITG DPR+KTFGF IRK Q+Q E VDIF +TYW +S YTN TLQ FIYKE DIE  F TMKMDITEMGFL FSVQAPNFSQKAFTLFHKL
Sbjct:   46 MTELGISEDVIKVYIQGILATLNIFYTPTAFTYXITGNDPRSKTFGFLIRKNQEQLEAVDIFGKTYWSLSNYTNKTLQMFIYKEQDIEASFITMKMDITEMGFLKFSVQAPNFSQKAFTLFHKL 169
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002072 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002072 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002072 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000020721.319e-88100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1386:2122... [more]
EMLSAP000000082415.748e-7183.87pep:novel supercontig:LSalAtl2s:LSalAtl2s4989:1444... [more]
EMLSAP000000076955.407e-7083.06pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203... [more]
back to top
BLAST of EMLSAG00000002072 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002072 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002072 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002072 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1386supercontigLSalAtl2s1386:21225..21705 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1386-snap-gene-0.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002072 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002072EMLSAT00000002072-697919Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1386:21225..21705-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002072-684838 ID=EMLSAG00000002072-684838|Name=EMLSAG00000002072|organism=Lepeophtheirus salmonis|type=gene|length=481bp|location=Sequence derived from alignment at LSalAtl2s1386:21225..21705- (Lepeophtheirus salmonis)
ATGACAGAACTAGGTAAGCTTGACAAAATCTATATCTGATCAATAAATTT
ATTTTTCACAATTTTCAGGTATATCTGAGGATGTGATTAAGGTATATATT
CAAGGCATATTGGCAACCTTGAACATATTTTACACACCAACTCCTTTTAC
TTATGTGATCACTGGCAAAGGTATGATCATATAGGTTCAAAAGTAATTAT
AACCATTCATATAACTTTTAGATCCTCGTAATAAAACTTTTGGCTTTCCT
ATAAGAAAATATCAACAACAGTTTGAACCAGTGGATATTTTTGAGCAAAC
TTATTGGTATATGTCTTACTATACAAATAACACGTTACAAAGGTTTATCT
ACAAGGAACATGACATAGAAACACTATTTAATACAATGAAAATGGACATT
ACTGAAATGGGGTTCTTAAACTTTTCAGTACAGGCCCCAAATTTCAGTCA
AAAAGCATTCACATTATTTCATAAATTATAA
back to top
Add to Basket