EMLSAG00000002098, EMLSAG00000002098-684864 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002098
Unique NameEMLSAG00000002098-684864
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002098 vs. L. salmonis peptides
Match: EMLSAP00000002098 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1394:65377:66676:-1 gene:EMLSAG00000002098 transcript:EMLSAT00000002098 description:"maker-LSalAtl2s1394-augustus-gene-0.8")

HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0 
Query:    1 MLSQVNCLKILHFKPQYKFFNASSSIDNTVILNPLSGISNKLNSSLFISFCLKFSVEFVQPQPIFWSSEISFWIDSIYYQVAILRLGKCEHLIQYHNLLKPFQWNRICIKKSKSGAVFAWNVHTKFKLNTEICEFQLTETHINSFILGGHLKKTYKEGFMNFRGKIKNINFFITGYNEYGLQMWTYNKPMFELDMVKSFRHIGKTTFIIEELNPISKGFLKKLFKGRFDFYEAIFTCFFLNGILSTDWEGIHLSMWSPHNTDHLICNSVNQDCNSEEWTAIERLQNSKCNAIQIPTLQAKKVHCFDRYAFGCSKIQPLDNYYLRGMSRHLQFIDRHYFRHFENDSTSFYGSKNTFIRKINSTWFI 365
            MLSQVNCLKILHFKPQYKFFNASSSIDNTVILNPLSGISNKLNSSLFISFCLKFSVEFVQPQPIFWSSEISFWIDSIYYQVAILRLGKCEHLIQYHNLLKPFQWNRICIKKSKSGAVFAWNVHTKFKLNTEICEFQLTETHINSFILGGHLKKTYKEGFMNFRGKIKNINFFITGYNEYGLQMWTYNKPMFELDMVKSFRHIGKTTFIIEELNPISKGFLKKLFKGRFDFYEAIFTCFFLNGILSTDWEGIHLSMWSPHNTDHLICNSVNQDCNSEEWTAIERLQNSKCNAIQIPTLQAKKVHCFDRYAFGCSKIQPLDNYYLRGMSRHLQFIDRHYFRHFENDSTSFYGSKNTFIRKINSTWFI
Sbjct:    1 MLSQVNCLKILHFKPQYKFFNASSSIDNTVILNPLSGISNKLNSSLFISFCLKFSVEFVQPQPIFWSSEISFWIDSIYYQVAILRLGKCEHLIQYHNLLKPFQWNRICIKKSKSGAVFAWNVHTKFKLNTEICEFQLTETHINSFILGGHLKKTYKEGFMNFRGKIKNINFFITGYNEYGLQMWTYNKPMFELDMVKSFRHIGKTTFIIEELNPISKGFLKKLFKGRFDFYEAIFTCFFLNGILSTDWEGIHLSMWSPHNTDHLICNSVNQDCNSEEWTAIERLQNSKCNAIQIPTLQAKKVHCFDRYAFGCSKIQPLDNYYLRGMSRHLQFIDRHYFRHFENDSTSFYGSKNTFIRKINSTWFI 365
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BLAST of EMLSAG00000002098 vs. L. salmonis peptides
Match: EMLSAP00000010255 (pep:novel supercontig:LSalAtl2s:LSalAtl2s67:837556:841296:1 gene:EMLSAG00000010255 transcript:EMLSAT00000010255 description:"maker-LSalAtl2s67-snap-gene-8.36")

HSP 1 Score: 80.1073 bits (196), Expect = 7.127e-17
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 0 
Query:  255 MWSPHNTDHLICNS-VNQDCNSEEWTAIERLQNSKCNAIQIPTLQAKKVHCFDRYAFGCS 313
            MWSP +T+HL C+S  NQ CNSEEW AIERLQNS CN IQIPTLQ KK    DR  F C 
Sbjct:    1 MWSPKDTEHLSCSSKYNQICNSEEWMAIERLQNSMCNVIQIPTLQNKKC---DRKMFACD 57
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BLAST of EMLSAG00000002098 vs. L. salmonis peptides
Match: EMLSAP00000000083 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10114:523:1466:-1 gene:EMLSAG00000000083 transcript:EMLSAT00000000083 description:"maker-LSalAtl2s10114-augustus-gene-0.2")

HSP 1 Score: 54.299 bits (129), Expect = 9.766e-9
Identity = 46/130 (35.38%), Postives = 59/130 (45.38%), Query Frame = 0 
Query:   48 ISFCLKFSVEFVQPQPIFWSSEISFWIDSIYYQVAILRL-GKCEHLIQY-HNLLKPFQWNRICIKKSKSGAVFAWNVHTKFKLNTEIC--------EFQLTETHINSFILGGHLKK-TYKEGFMNFRGKI 166
            ++FC KF++    PQ IF+   ISFWIDS   + A+LR   K E+LI + H+ L  F W  ICI K      F    H K   N EIC         F +    I    LGG      +K     FRG +
Sbjct:   69 LTFCFKFNLFHDVPQTIFFGPHISFWIDSFIKKAAVLRFQSKNEYLIPFKHHHLSHF-WQCICILKQD----FQTRSHLKVIWNGEICLSVNDISQNFAIPRNFIKDLTLGGRAPNLVHKNEVYMFRGMV 193
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002098 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002098 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002098 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000020980.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1394:6537... [more]
EMLSAP000000102557.127e-1766.67pep:novel supercontig:LSalAtl2s:LSalAtl2s67:837556... [more]
EMLSAP000000000839.766e-935.38pep:novel supercontig:LSalAtl2s:LSalAtl2s10114:523... [more]
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BLAST of EMLSAG00000002098 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002098 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002098 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002098 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1394supercontigLSalAtl2s1394:65377..66676 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1394-augustus-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002098 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002098EMLSAT00000002098-697945Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1394:65377..66676-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002098-684864 ID=EMLSAG00000002098-684864|Name=EMLSAG00000002098|organism=Lepeophtheirus salmonis|type=gene|length=1300bp|location=Sequence derived from alignment at LSalAtl2s1394:65377..66676- (Lepeophtheirus salmonis)
ATGTTATCTCAAGTAAGGAATTAGATTTTTGCTTTGACAAATTCTGGAAT
AACGCATAATTTTCTTCTTCATTATAGGTCAATTGTTTAAAAATTCTTCA
TTTTAAGCCACAATACAAGTTTTTCAATGCCTCCTCCTCAATTGACAATA
CAGTTATTCTAAACCCTCTATCTGGTATTTCTAATAAGTTAAATAGTTCC
TTATTCATTTCTTTTTGTTTGAAATTTTCCGTTGAGTTTGTACAACCTCA
GCCAATATTTTGGAGCTCTGAAATAAGTTTTTGGATCGATTCAATTTACT
ATCAAGTTGCAATTCTTCGTTTGGGTAAATGTGAGCATTTAATTCAATAT
CATAACCTCTTAAAACCTTTTCAATGGAATAGAATTTGTATTAAGAAATC
AAAATCAGGTTTGAAGCCTTAAAATGATATATTTTGAAAGAGTTTGTAAC
AAAAAAAGTTGGTTTGTTTCTACAGGGGCTGTGTTTGCCTGGAATGTTCA
TACAAAATTCAAATTAAATACTGAAATATGTGAATTTCAACTCACAGAAA
CACATATTAATAGTTTTATATTGGGTGGTCATCTGAAAAAAACGTACAAA
GAGGGATTTATGAACTTTCGAGGAAAGATTAAGAATATAAATTTTTTTAT
AACGGGATACAATGAATATGGTCTCCAGATGTGGACATATAATAAACCTA
TGTTTGAATTGGATATGGTGAAATCTTTTCGCCACATAGGAAAAACTACG
TTCATAATTGAGGTCATTATTATTAATAATGTGTAATTATGTCATAATAT
TTATACCTTGAATTGATTTTTTTTTAAGTATGCAGGAATTAAACCCAATA
AGCAAAGGTTTCTTAAAGAAGCTCTTTAAAGGTCGATTTGATTTTTACGA
AGCCATTTTTACTTGTTTTTTCTTAAATGGTATTTTGTCAACGGATTGGG
AAGGAATACATTTGTCAATGTGGTCACCACATAACACAGACCATCTAATC
TGTAATTCAGTCAATCAAGATTGTAATTCAGAGGAATGGACGGCTATTGA
ACGCCTTCAAAATTCTAAGTGCAATGCCATACAAATACCAACTTTGCAAG
CTAAAAAAGTACACTGCTTTGATCGCTATGCCTTTGGCTGCAGTAAAATA
CAACCATTGGATAACTACTATCTAAGAGGAATGAGCAGACACTTACAATT
TATTGATAGGCACTATTTCCGACATTTTGAGAACGACTCAACTAGTTTTT
ATGGATCTAAAAATACATTTATAAGAAAAATTAATTCAACCTGGTTTATA
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