EMLSAG00000002108, EMLSAG00000002108-684874 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002108
Unique NameEMLSAG00000002108-684874
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Match: EMLSAP00000002108 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:3406:1 gene:EMLSAG00000002108 transcript:EMLSAT00000002108 description:"maker-LSalAtl2s1398-augustus-gene-0.8")

HSP 1 Score: 291.967 bits (746), Expect = 3.890e-102
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 
Query:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRKTHL 143
            MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRKTHL
Sbjct:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRKTHL 143
[Close]
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Match: EMLSAP00000002948 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:22493:22980:-1 gene:EMLSAG00000002948 transcript:EMLSAT00000002948 description:"maker-LSalAtl2s1696-augustus-gene-0.5")

HSP 1 Score: 116.701 bits (291), Expect = 1.435e-33
Identity = 56/126 (44.44%), Postives = 88/126 (69.84%), Query Frame = 0 
Query:   17 YGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRKTH 142
            Y +C D+F N+ FLS+PT+ E++M  +   LV+ SNEL+KNE EM+ AL+N+L+ SV  L+ +L+ +I +IQ +RC+ +K     +Q  F+  Q DE EL+ F++ELQYF++ IN  L+C+S K +
Sbjct:   18 YSTCPDEFSNASFLSNPTRMELLM-SRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142
[Close]
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Match: EMLSAP00000000699 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299:56785:-1 gene:EMLSAG00000000699 transcript:EMLSAT00000000699 description:"maker-LSalAtl2s110-augustus-gene-0.3")

HSP 1 Score: 107.842 bits (268), Expect = 3.863e-30
Identity = 54/140 (38.57%), Postives = 93/140 (66.43%), Query Frame = 0 
Query:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
            M  G+    +   + +Y +C D+F N+ FLSSPT+ E++M  ++  LV QSNELSKNE+EM+ ALR +L+ SV ++I++++++I + Q +RC+ +K     +Q+ F   + DE ELQ F++ELQ F+ +I+   +C+  +
Sbjct:    1 MSRGMDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLM-TRVQTLVQQSNELSKNEMEMLKALRATLLYSVEEMISAIEAEITKNQDLRCNTIKHAQQIIQDRFRSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGR 139
[Close]
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Match: EMLSAP00000011944 (pep:novel supercontig:LSalAtl2s:LSalAtl2s846:177909:178785:1 gene:EMLSAG00000011944 transcript:EMLSAT00000011944 description:"maker-LSalAtl2s846-augustus-gene-0.6")

HSP 1 Score: 107.071 bits (266), Expect = 6.725e-30
Identity = 53/140 (37.86%), Postives = 94/140 (67.14%), Query Frame = 0 
Query:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
            M  G+    +   + +Y +C D+F N+ FLSSPT+ E++M  ++  LV QSNELSKNE+EM+ ALR++L+  V ++I++++++I + Q +RC+ +K     +Q+ F+  + DE ELQ F++ELQ F+ +I+   +C+  +
Sbjct:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLM-TRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGR 139
[Close]
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Match: EMLSAP00000001584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:95760:96281:-1 gene:EMLSAG00000001584 transcript:EMLSAT00000001584 description:"maker-LSalAtl2s1274-augustus-gene-0.24")

HSP 1 Score: 106.301 bits (264), Expect = 2.118e-29
Identity = 52/125 (41.60%), Postives = 89/125 (71.20%), Query Frame = 0 
Query:   16 NYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
            +Y +C D+F N+ FLSSPT+ E++M  +   LV+QSNELSKNE+EMI AL+++LV  V  +I+S+++++ + Q +RC+ +K V   +Q+ F+  + DE EL+ F++ELQ F ++I+   +C+  +
Sbjct:   27 SYSACPDEFGNASFLSSPTRLELLM-TRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGR 150
[Close]
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Match: EMLSAP00000001316 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:82149:82639:-1 gene:EMLSAG00000001316 transcript:EMLSAT00000001316 description:"maker-LSalAtl2s1222-augustus-gene-0.7")

HSP 1 Score: 105.145 bits (261), Expect = 4.337e-29
Identity = 51/140 (36.43%), Postives = 92/140 (65.71%), Query Frame = 0 
Query:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
            M  G+S   +   + +Y  C D+F N+ FLS+PT+ E++M  ++  LV QSNELSKNE+EM+ ALR +L+  V ++I +++++I + Q +RC+ +K     +Q+ F+  + DE EL+ F++ELQ F+ +++   +C+  +
Sbjct:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLM-SRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGR 139
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002108 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002108 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002108 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000021083.890e-102100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:... [more]
EMLSAP000000029481.435e-3344.44pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:2249... [more]
EMLSAP000000006993.863e-3038.57pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299... [more]
EMLSAP000000119446.725e-3037.86pep:novel supercontig:LSalAtl2s:LSalAtl2s846:17790... [more]
EMLSAP000000015842.118e-2941.60pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:9576... [more]
EMLSAP000000013164.337e-2936.43pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:8214... [more]
back to top
BLAST of EMLSAG00000002108 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002108 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002108 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002108 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1398supercontigLSalAtl2s1398:446..3406 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1398-augustus-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002108 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002108EMLSAT00000002108-697955Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1398:446..3406+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002108-684874 ID=EMLSAG00000002108-684874|Name=EMLSAG00000002108|organism=Lepeophtheirus salmonis|type=gene|length=2961bp|location=Sequence derived from alignment at LSalAtl2s1398:446..3406+ (Lepeophtheirus salmonis)
TAAAACTGCAAAACCGTTTTTCATGGTCAAATATATGAATAAATTAAAAG
TGTATTGTTATGTATACTGGGCTATCAACTATTAAAGAATCTGCTTACTC
TATCAACTATGGTTCTTGTCAAGATAAATTTGTGAACTCATTTTTCTTGA
GCTCACCTACAAAGTCTGAAATTATGATGTTCCCCAAAATCCATAAATTG
GTGGATCAGTCCAATGAATTAAGTAAAAATGTATTTACACTTATTTAATA
GGTATATATTTTAATATTCATTTCGTAATTTGATAACCATTATTAGGAGA
TAGAAATGATAAATGCTTTAAGAAATTCACTGGTTGAATCTGTACGACAA
CTAATTACCTCTCTCAAATCTCAGATTGCTGAAATACAAAGTATGCGATG
TCATAGACTAAAGAAGGTTCTGAATTTTATGCAAAATCTATTTTATATAG
GTCAATCTGACGAAACTGAACTTCAAGGTAATTAATTGCCAATCTATAAT
TAATATATCATTACTTCTCGATGCAAGTTGCAACACGCCTTGATCATTAA
TATTTTATAAAATTTATACAAATCGGTTATATTAAAAAGTAGTATCAAGA
ATGCTTCGACTTATGAGTGCAAAAACTATTTTTCAATTACAAATAATTTA
TTTATTTATGTGTAATTGAAGTGCTATCGTCTAACTTATATTCTTGATCT
TTAGCAGTAAAGTCAGGTTTGATTAATGTTATTTCATTTTAAATTAAGAA
TTATTTAATTGTTAAGATATCACATCTATATTTTTCATTAATATATTCTT
TAACATCGTTCTAATTTTTTTCCTCCGCATTTTTAGAATTTGCGACAGAG
CTCCAATACTTTGTGAACGAGATCAACATCGAACTGGAATGTTTGTCTAG
AAAAACACACTTATAGATAAAGTTTGACAACCAATGAGAGTATACTTGTT
CTTTGTGTCTATTCCTCATTCTAAATCGATATAATTATGTAAAGAAAAAA
AAGACTAATTCACAAAAATGTACATATATTATTTATATGATCTGATATCT
CAGGAAATTCATGTGTAGGAAATACAACGTTTCAATAATAAGAACGTAAA
AATCGAATGTATAAATGGCATTATTAGTCCAAATGTCGACAATAGCAACA
TAAATACTAGACAATATACAATGATCTAGAATTTAATTTAAAATCGAAAT
TCATGATAATAATTTAGGAAGGTACAATCAAGTAACACAATATACTGAAT
ATTATTGGATAAAACACATGAACACATGTGTTTCTTAATATTTTAAATGT
ATAAATATAATTCCTCAGACATAATGAACGAGGAAATTTGACGGAAACAA
CAATGTATCAAATTCATCATATTAAATAAAAATATCTTTAAGCAGGAAAT
GAGATAACTTTCTTGAATGGTTTTCTAGCAGCTCTCCTAAGCTGAACAAC
CGGTAATCTTTTTCTGAGTTTCTTTGTGGTGATCGTTGCTTTATAGAAAA
CATCATCAGGTGCATCCATCCAAGAGATGACCTGCTTATGTCCTCCTTGG
ATTCTAGTCAAAGTAGCGACTCTACCTTTAGGTGGAACAACATTTGGAAT
GTGTTGACGGCCATCAGGCCGAAGTACTTTGGAGGCAGGACCTTCGGGCC
CTCTTTCGTCATAAGCCCTTTTCTTATACAAGATTGCGTTATGGTTAGGA
GTCGACTGATAGGAGCTGGGAACCCTATCGTATATGTAGCTACCATCGGA
TCGCTTATTAGGACGAGGAAAGGATTCTCTAACGGGTCTAGGTAATTGTG
ATCTTGGAGTAAGAATAAGCCATTCTTGTCGCCCGATATCTTTTTGACCG
AGGCGTTGGACAACAACACTCATATCTACTCTCTTTTTTGGAGTAAATTT
GTTATAAAGACGGATTTTCTTTTCCGACATACCAGACATTTTACTGATGG
CATCGGCTTTTACTCCCTTCATATCAATAGGTGTACCAGGTTTACGAGCA
AAATGATGAATATTAATCATGCCTCTACAGATTCGACGAGAAGCTCTAGT
AAGTGGTGTGGTTTTTAAATAAAATGCTGCTCGCGTTTTTCCAGAGCCTG
ATTTATTTGTTCCACCAGCAGGTGATCCAGGTTCAATAATAAGACCGGGT
CTGAGTTGGGCTAATTTGGCTGCAGTTGAACTCGAAAAAGTAGATTTGTC
TAAAATGAAACTGTCTTCTATTGTGGATGAAGAGACAAAAATTCCATACT
TTTTATACTTGATCCATGAATATTTACTTAGATTGGGATATGCATCACAA
TCTTTGCCTCTGATAAAAATTTCTCCATTTGACCCAGTGAGTCGAGTGCT
TTTGTTATTGTAAGGTGGAACATAAACCTGTTTTAGTTTAGACTCCGCTT
CTATGGCCTTCAACCTCTTTTGTTGAACATAGCGATCCGTTGTTTTCCAC
ATAAAGAAGAACTCAATAATATTTTTCATTGATTTCCAAGGTAGAAAATC
TCTTCTGATATCATTAAAATCTTTTCCATATTTTTCGKCAGCCTCTTCAA
ATAGATTGGCTTCACTTGCTGACCAATCTTCCATTTCATCCCGACAAAGC
ATGGGACCCGTTGTAGGAACTAAGGCTCCTAGAGCGGAAGCAATATCATA
TTCATGCTTGTGAAGTAGATGGTGAGCATGGAATAAAGTAATGTCTCTTG
AGGCAGCCGCTGCACTCATATGAAGGCTGGGMTGCTTCACAGAGCTGGAA
CAATCCAGAGCTCTGGCAAAGGTACCCACACTACGAGAAATGATGAGGAA
TTTGTCGACTTGTTCCTCTGCTATGCGATGATCCGTGTTCCAAAGACGCT
CTTCAAGGAGAGCCTCATCTCGTTCATCACTTTCTCCAGAGGCCAAAAGA
GGAGAGACCGTGGCTTGGTAGGCAGATCCGATACGGATCTCTCCTCGGTC
TGCCAAGAGCG
back to top
Add to Basket