EMLSAG00000002186, EMLSAG00000002186-684952 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002186
Unique NameEMLSAG00000002186-684952
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002186 vs. C. finmarchicus
Match: gi|592880591|gb|GAXK01077310.1| (TSA: Calanus finmarchicus comp4402501_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 1.619e-3
Identity = 27/92 (29.35%), Postives = 44/92 (47.83%), Query Frame = 0 
Query:    1 MCPEQCGVCQA-------SCRDTGASCLEHSESCLQKSIEKQCPKSCASC-DDCEDLINSDLCSGYTHRCEEDTSV-----QYACRKTCELC 79
            MCP+ CG+C         +C +  ++C + +  C Q  ++K C KSC +C  D  +      CS Y + C E+ +        +C+KTC  C
Sbjct:  157 MCPKSCGLCAGMTPHESNTCYNLWSNCNQLTGYCNQARVKKNCKKSCQACGGDANNEPAPSSCSDYWNNCRENAAYYCPRWPESCKKTCGQC 432
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BLAST of EMLSAG00000002186 vs. C. finmarchicus
Match: gi|592955022|gb|GAXK01003531.1| (TSA: Calanus finmarchicus comp1457667_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.143e+0
Identity = 28/94 (29.79%), Postives = 45/94 (47.87%), Query Frame = 0 
Query:    2 CPEQCGVCQA----SCRDTGASCLEHSESCLQKSIEKQCPKSCASCDD-------CEDLINSDLCS--GY---THRCEEDTSVQYACRKTCELC 79
            C + CG+C      +C DT + C   S++C  +     C K+C  C D       C D ++ + CS  GY   + +C+ +   +  C KTC+LC
Sbjct:   94 CKKTCGICAGDESEACEDTYSHCFHKSKAC--RYYGNSCKKTCGLCRDSQTVDPACTDKLSGEECSYKGYKPESWKCKHERHSK-NCMKTCKLC 366
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000002186 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1400:29785:30148:-1 gene:EMLSAG00000002186 transcript:EMLSAT00000002186 description:"maker-LSalAtl2s1400-augustus-gene-0.1")

HSP 1 Score: 155.606 bits (392), Expect = 1.846e-50
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 
Query:    1 MCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            MCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC
Sbjct:    1 MCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000005974 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1175:2268:1 gene:EMLSAG00000005974 transcript:EMLSAT00000005974 description:"maker-LSalAtl2s322-augustus-gene-0.11")

HSP 1 Score: 149.443 bits (376), Expect = 2.016e-47
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 0 
Query:    1 MCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            MCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGY HRC EDTSVQYACRKTC LC
Sbjct:   11 MCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYKHRCGEDTSVQYACRKTCGLC 89
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000005975 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:19068:19805:-1 gene:EMLSAG00000005975 transcript:EMLSAT00000005975 description:"maker-LSalAtl2s322-augustus-gene-0.10")

HSP 1 Score: 94.3597 bits (233), Expect = 1.182e-25
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 0 
Query:    2 CPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            CPE CGVC+A C+D  A C + S  CLQ  ++K CPKSCASCD+CED+I+  LC  Y  RC+ D SV YACR+TC LC
Sbjct:   54 CPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLC 131
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000006643 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3671:6789:7712:-1 gene:EMLSAG00000006643 transcript:EMLSAT00000006643 description:"maker-LSalAtl2s3671-snap-gene-0.3")

HSP 1 Score: 85.8853 bits (211), Expect = 4.399e-22
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:    2 CPEQCGVCQASCRDTGASCLEHS-ESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            CP+ CG+C A CRD   +C   S E C +  I  +CPKSCA CD+CEDLI+ + C    +RC  D SVQY+CRK C LC
Sbjct:  106 CPKSCGICDAKCRDNNGACYRDSIEECFEPQIANECPKSCAGCDECEDLISIEFCESIKNRCSTDASVQYSCRKXCHLC 184
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000003839 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2089:76:636:1 gene:EMLSAG00000003839 transcript:EMLSAT00000003839 description:"augustus_masked-LSalAtl2s2089-processed-gene-0.0")

HSP 1 Score: 70.8626 bits (172), Expect = 3.305e-17
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:   11 ASCRDTGASCLEHS-ESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            A CRD   +C     E C    I K CPK+CA CD+CEDLI+ + C  Y +RC  DT ++Y+CRKTC LC
Sbjct:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLC 74
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000010898 (pep:novel supercontig:LSalAtl2s:LSalAtl2s726:28203:28961:-1 gene:EMLSAG00000010898 transcript:EMLSAT00000010898 description:"maker-LSalAtl2s726-augustus-gene-0.7")

HSP 1 Score: 66.6254 bits (161), Expect = 3.125e-15
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0 
Query:    2 CPEQCGVCQASCRDTGASC-LEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            CP+ CG+C+A C+D    C LE+ +    +++  +CPK+CA+CD CEDLI++ LC      C  +T ++YACRKTC  C
Sbjct:   49 CPQTCGICKAKCKDYNGDCALEYMQCGFNETLVSECPKTCATCDVCEDLIDTSLCVEGLSDC-LNTYMRYACRKTCLYC 126
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000007568 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4372:5191:5850:1 gene:EMLSAG00000007568 transcript:EMLSAT00000007568 description:"maker-LSalAtl2s4372-snap-gene-0.1")

HSP 1 Score: 64.6994 bits (156), Expect = 9.230e-15
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0 
Query:    1 MCPEQCGVCQASCRDTGASCLEHSESC-LQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            +CP+ CGVC A C+D  ++CL     C L  +   +CPK+CA CD CEDLI+S +C      C ++  ++YACRK+C+ C
Sbjct:   26 VCPQTCGVCNAICKDYNSNCLTEESXCILNNNXLDECPKTCAKCDVCEDLIDSSICETKLSECAQN-QMKYACRKSCKHC 104
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000006239 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3409:1295:2068:-1 gene:EMLSAG00000006239 transcript:EMLSAT00000006239 description:"maker-LSalAtl2s3409-augustus-gene-0.1")

HSP 1 Score: 63.929 bits (154), Expect = 2.307e-14
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0 
Query:    2 CPEQCGVCQASCRDTGASCL-EHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            CPE CGVC  +C+D    C  E S+  +  ++  +CPK+CA CD CEDLI+S +C      C     ++YACRK+C+ C
Sbjct:   49 CPETCGVCNTTCKDYNGICFNEDSQXTINSNLLYECPKTCAKCDLCEDLIDSSICETRLSECAL-KKMKYACRKSCKYC 126
[Close]
BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000012209 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8853:989:1792:-1 gene:EMLSAG00000012209 transcript:EMLSAT00000012209 description:"maker-LSalAtl2s8853-snap-gene-0.3")

HSP 1 Score: 63.5438 bits (153), Expect = 2.822e-14
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0 
Query:   25 ESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            ESC   + +  CPKSC  CD+CEDLI+ + C    +RC  D SV+Y+CRKTC+LC
Sbjct:   46 ESCFDAAFQYTCPKSCGICDECEDLISIEFCESIKNRCNTDASVRYSCRKTCDLC 100
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Match: EMLSAP00000010892 (pep:novel supercontig:LSalAtl2s:LSalAtl2s726:17362:18120:-1 gene:EMLSAG00000010892 transcript:EMLSAT00000010892 description:"maker-LSalAtl2s726-augustus-gene-0.6")

HSP 1 Score: 62.3882 bits (150), Expect = 7.854e-14
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:    2 CPEQCGVCQASCRDTGASCLEHSESCLQK-SIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            CP+ C VC+A C+D   +C + +  C    +I  +CPK+CA+CD CEDLI++ +C      C  +  ++YACRKTC  C
Sbjct:   49 CPKTCSVCEAQCKDYNDNCYQENFQCGNNVTISNECPKTCATCDVCEDLIDTSICQTSLKDC-HNNYMRYACRKTCLYC 126
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BLAST of EMLSAG00000002186 vs. nr
Match: gi|225712722|gb|ACO12207.1| (ZK643.6 precursor [Lepeophtheirus salmonis])

HSP 1 Score: 75.0998 bits (183), Expect = 2.539e-15
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:    2 CPEQCGVCQASCRDTGASCLEHSESC-LQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
            CPE CGVC+A C+D  A+C      C + K++   CPK+CA+CD+CEDLI+S +C      C ED +++Y CRK+C+ C
Sbjct:   49 CPETCGVCKAICKDYNANCFNEDSQCTINKNLSNTCPKTCATCDECEDLIDSSICENKKSDCAED-NMKYVCRKSCKYC 126
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002186 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002186 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592880591|gb|GAXK01077310.1|1.619e-329.35TSA: Calanus finmarchicus comp4402501_c0_seq1 tran... [more]
gi|592955022|gb|GAXK01003531.1|2.143e+029.79TSA: Calanus finmarchicus comp1457667_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002186 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 21
Match NameE-valueIdentityDescription
EMLSAP000000021861.846e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1400:2978... [more]
EMLSAP000000059742.016e-4796.20pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1175:... [more]
EMLSAP000000059751.182e-2558.97pep:novel supercontig:LSalAtl2s:LSalAtl2s322:19068... [more]
EMLSAP000000066434.399e-2251.90pep:novel supercontig:LSalAtl2s:LSalAtl2s3671:6789... [more]
EMLSAP000000038393.305e-1750.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2089:76:6... [more]
EMLSAP000000108983.125e-1544.30pep:novel supercontig:LSalAtl2s:LSalAtl2s726:28203... [more]
EMLSAP000000075689.230e-1543.75pep:novel supercontig:LSalAtl2s:LSalAtl2s4372:5191... [more]
EMLSAP000000062392.307e-1443.04pep:novel supercontig:LSalAtl2s:LSalAtl2s3409:1295... [more]
EMLSAP000000122092.822e-1452.73pep:novel supercontig:LSalAtl2s:LSalAtl2s8853:989:... [more]
EMLSAP000000108927.854e-1441.77pep:novel supercontig:LSalAtl2s:LSalAtl2s726:17362... [more]

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BLAST of EMLSAG00000002186 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002186 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002186 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225712722|gb|ACO12207.1|2.539e-1546.84ZK643.6 precursor [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000002186 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1400supercontigLSalAtl2s1400:29785..30148 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1400-augustus-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteZK643.6 precursor [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002186 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002186EMLSAT00000002186-698033Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1400:29785..30148-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002186-684952 ID=EMLSAG00000002186-684952|Name=EMLSAG00000002186|organism=Lepeophtheirus salmonis|type=gene|length=364bp|location=Sequence derived from alignment at LSalAtl2s1400:29785..30148- (Lepeophtheirus salmonis)
ATGTGCCCAGAACAATGTGGTGTTTGTCAAGGTTCGGCAAAAATCATAAT
ATTATTATAATAATGAAGCAAAATGATCCATTCATTAAATTATTTTTAGC
AAGTTGCAGAGACACAGGTGCTTCGTGCCTTGAACACTCAGAGTCTTGTC
TACAAAAAAGTATAGAAAAGCAATGTCCAAAAAGTTGTGCTTCTTGTGAT
GGTTTGAATTAAGATATTAATACATGATTAATATATATAAGTAAATTGTG
TTTTTTTTAGATTGTGAGGATTTGATTAATTCAGACTTATGCAGTGGTTA
CACACATCGGTGTGAGGAAGATACAAGTGTTCAATATGCGTGTAGAAAAA
CATGTGAACTTTGT
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