EMLSAG00000002529, EMLSAG00000002529-685295 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592831068|gb|GAXK01126476.1| (TSA: Calanus finmarchicus comp46716_c0_seq1 transcribed RNA sequence) HSP 1 Score: 66.6254 bits (161), Expect = 5.051e-13 Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPK-KKASPENSSESIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGT 85 RGD I+P++ AFPK KK E +++S GQ GFTTVGK K+++KQYNSP +MYSE+ ++EIM +GT Sbjct: 521 RGDKIVPSMNSAFPKPKKEELETATKSYSQMVLEKTGRLPGQ---KDQGFTTVGKAKMASKQYNSPMKMYSEDIIEEIMTQGT 760
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592891738|gb|GAXK01066637.1| (TSA: Calanus finmarchicus comp4978_c0_seq1 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 2.034e-8 Identity = 27/84 (32.14%), Postives = 43/84 (51.19%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGVRSS----SGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKE 83 RGD+I+PN E +P K ++ Y++ ++E+ G++ FTT GK I QYN P E Y E +DE+ ++ Sbjct: 447 RGDHIVPNFEEIWPSNKDKSSKYKRNLIGMEYYMDAMEN-HGLKGHLPQPENFTTCGKLGIEINQYNCPIECYDEAVIDEMTED 695
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592933408|gb|GAXK01025145.1| (TSA: Calanus finmarchicus comp189145_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 5.902e-8 Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGVRSSS-GFTTVGKPKISAKQYNSPFEMYSEEALDEIM 81 RGD+IIP+L+ FP K Y+ ++ G G R FTTVGK ++ +YN+P ++YS+ +DE++ Sbjct: 305 RGDHIIPSLKECFPIKSTEEYEQMSEQDRLAYYNEAMRLGLGSRLGQPFFTTVGKMRVKVPKYNNPRDLYSDGVMDEMI 541
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592899678|gb|GAXK01058697.1| (TSA: Calanus finmarchicus comp1216411_c1_seq1 transcribed RNA sequence) HSP 1 Score: 46.9802 bits (110), Expect = 1.032e-6 Identity = 27/86 (31.40%), Postives = 48/86 (55.81%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPEN-----SSESIKPRPYWIRSIESGQGV--RSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMK 82 RGD+I+P+ E + KA + + + Y+ +++ G G+ + + FTT GKP + QYNSP E+Y ++ +DE++K Sbjct: 167 RGDHIVPSFE-EISRSKAETDQVKVIKEGRHLTGKAYFKDAMK-GHGLPGKIPTSFTTCGKPYVENLQYNSPIEIYDDKTVDEMVK 418
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592781780|gb|GAXK01172788.1| (TSA: Calanus finmarchicus comp1016609_c0_seq1 transcribed RNA sequence) HSP 1 Score: 47.3654 bits (111), Expect = 1.250e-6 Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESG-QGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLE 87 RGD+++PN++ FP K + Y+ ++ G Q FTT+GK K+ +YN P ++YSE +DE M GT E Sbjct: 424 RGDHVVPNMKECFPVKTEHDIVKMTDEEKLAYYEEAMRKGLQSRLIPHFFTTIGKMKVKTPKYNCPVDLYSETTMDE-MVSGTSE 675
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592899677|gb|GAXK01058698.1| (TSA: Calanus finmarchicus comp1216411_c1_seq2 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 2.377e-5 Identity = 18/49 (36.73%), Postives = 30/49 (61.22%), Query Frame = 0 Query: 36 WIRSIESGQGV--RSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMK 82 + + G G+ + + FTT GKP + QYNSP E+Y ++ +DE++K Sbjct: 167 YFKDAMKGHGLPGKIPTSFTTCGKPYVENLQYNSPIEIYDDKTVDEMVK 313
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592776823|gb|GAXK01177745.1| (TSA: Calanus finmarchicus comp5488910_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 3.137e-4 Identity = 14/29 (48.28%), Postives = 21/29 (72.41%), Query Frame = 0 Query: 52 FTTVGKPKISAKQYNSPFEMYSEEALDEI 80 FT +GK K++ +YN P +MYSE +DE+ Sbjct: 103 FTVIGKMKVTTPKYNCPVDMYSETTMDEM 189
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592942431|gb|GAXK01016122.1| (TSA: Calanus finmarchicus comp204928_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 7.935e-4 Identity = 22/78 (28.21%), Postives = 39/78 (50.00%), Query Frame = 0 Query: 6 DNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQ--GVRSSSG-FTTVGKPKISAKQYNSPFEMYSEEALDEI 80 D ++P+ ++ +PK K + IE G++ S G FT++GKP++ K NS ++SEE + E+ Sbjct: 380 DVVVPSFDMLYPKPKVEAN-----------MVDYIEDAMKTGIKGSCGMFTSLGKPRVKVKGANSSIGLFSEETIQEL 580
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592954417|gb|GAXK01004136.1| (TSA: Calanus finmarchicus comp255602_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 3.503e-3 Identity = 28/86 (32.56%), Postives = 43/86 (50.00%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKP---RPYWIRSIES-GQG-VRSSSGFTTVGKP-KISAKQYNSPFEMYSEEALDEIMKE 83 RGD+I+P+ + FP + S K + Y+ ++E+ G G + FTTVG I QYN P + Y E AL+E+ + Sbjct: 342 RGDHIVPSFDEMFPGLRKDDHLDGTSRKKFIGQDYYKDAMENHGLGHMPQPDNFTTVGNTLGIEIHQYNCPIDAYGEGALEEMRSQ 599
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Match: gi|592892780|gb|GAXK01065595.1| (TSA: Calanus finmarchicus comp4693_c0_seq2 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 6.430e-3 Identity = 22/82 (26.83%), Postives = 40/82 (48.78%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIES-GQG-VRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKE 83 RG I+P+ + +P+ Y + +++ G G + FTT G+ I QYN+P E Y++E +D++ +E Sbjct: 421 RGTFIVPSFDEIWPQAGKERAGKGSKRMGMDYILEAMQHHGLGHLPQPDNFTTCGRLGIEVNQYNNPIECYADETIDDMREE 666
BLAST of EMLSAG00000002529 vs. L. salmonis peptides
Match: EMLSAP00000002529 (pep:novel supercontig:LSalAtl2s:LSalAtl2s14:1093206:1130691:1 gene:EMLSAG00000002529 transcript:EMLSAT00000002529 description:"augustus_masked-LSalAtl2s14-processed-gene-10.1") HSP 1 Score: 176.022 bits (445), Expect = 2.919e-58 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 Query: 1 MPSRGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLE 87 MPSRGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLE Sbjct: 1 MPSRGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLE 87
BLAST of EMLSAG00000002529 vs. L. salmonis peptides
Match: EMLSAP00000011910 (pep:novel supercontig:LSalAtl2s:LSalAtl2s83:648777:650831:1 gene:EMLSAG00000011910 transcript:EMLSAT00000011910 description:"maker-LSalAtl2s83-augustus-gene-6.20") HSP 1 Score: 53.1434 bits (126), Expect = 3.475e-10 Identity = 30/85 (35.29%), Postives = 49/85 (57.65%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKA-SPENSSESIKPRPYWIRSIESGQGVRS----SSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKE 83 RGD+I+PN E +P KK E ++ Y+ ++ +G + + FTTVGKP+I QY+ P ++YSE+ L+E+ +E Sbjct: 88 RGDHIVPNFEEIWPSKKGPKAERRKRGLE---YYYDAMTNGPQLSGFLPLAPNFTTVGKPQIYVNQYDCPIQVYSEDTLEEMKEE 169
BLAST of EMLSAG00000002529 vs. nr
Match: gi|225713334|gb|ACO12513.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 167.933 bits (424), Expect = 4.670e-51 Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLE 87 RGDNIIPNLELAFPKKKASPENSSE IKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTL+ Sbjct: 88 RGDNIIPNLELAFPKKKASPENSSEPIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLD 171
BLAST of EMLSAG00000002529 vs. nr
Match: gi|225712494|gb|ACO12093.1| (PDZ and LIM domain protein 1 [Lepeophtheirus salmonis]) HSP 1 Score: 55.8398 bits (133), Expect = 2.227e-7 Identity = 25/91 (27.47%), Postives = 52/91 (57.14%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESI---------KPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGT 85 RGD+I+PN + + K+ + N +++ + + Y++ ++ +G + + FTTVGKP+ QY++P YSE+ ++E+M++ Sbjct: 86 RGDHIVPNFDELWGKQGQNTTNEHKTVAEQLQEGPQRGKEYFLHAMSAGLPGKKDTVFTTVGKPRAQVIQYDNPINCYSEDVINEMMEDNV 176
BLAST of EMLSAG00000002529 vs. nr
Match: gi|669193513|gb|AII16462.1| (PDZ and LIM domain protein 1, partial [Paracyclopina nana]) HSP 1 Score: 55.0694 bits (131), Expect = 2.616e-7 Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0 Query: 4 RGDNIIPNLELAFP----KKKASPENSSESIKPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGT 85 RGD I+PN E +P K K P I Y + + G + + F+TVGKPK++ QY++P + YSEE LDE+ T Sbjct: 75 RGDFIVPNFEEIWPSGKSKNKKGPSGPETGID---YILHASTVGIPGQRNLNFSTVGKPKVTVNQYDNPIQCYSEETLDEMTNSST 157
BLAST of EMLSAG00000002529 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold452_size166894-snap-gene-0.46 (protein:Tk11709 transcript:maker-scaffold452_size166894-snap-gene-0.46-mRNA-1 annotation:"pdz and lim domain protein 3") HSP 1 Score: 110.153 bits (274), Expect = 3.617e-32 Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESI-------KPRPYWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTL 86 RGD+I+P++ AFP+K + + + + K +PYWIRSIE G G+++S+GFTTVGKPK+ +KQYNSP E+YSEEAL+EIMKEGTL Sbjct: 87 RGDHIVPSMNEAFPRKGQTQDTVTNIVDEFDAPSKDKPYWIRSIEEGNGLKNSNGFTTVGKPKMCSKQYNSPLEIYSEEALEEIMKEGTL 176
BLAST of EMLSAG00000002529 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold261_size233860-snap-gene-1.24 (protein:Tk10683 transcript:maker-scaffold261_size233860-snap-gene-1.24-mRNA-1 annotation:"pdz and lim domain protein 3") HSP 1 Score: 85.8853 bits (211), Expect = 4.871e-22 Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGV--RSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTL 86 RGDNI+P++ FPK K P KP+PY+ R +E + + + GFTTVGKPK++ KQY SP EMY EEAL+EI+ +GT+ Sbjct: 122 RGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTI 206
BLAST of EMLSAG00000002529 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold55_size446313-snap-gene-1.15 (protein:Tk00219 transcript:maker-scaffold55_size446313-snap-gene-1.15-mRNA-1 annotation:"pdz and lim domain protein 1") HSP 1 Score: 54.6842 bits (130), Expect = 6.799e-11 Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0 Query: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRP---YWIRSIESGQGVRSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEG 84 RGD+I+PN E +P + S N + P Y + +++ G FTTVGKPKI QY++P E YS +++ E+ ++G Sbjct: 86 RGDHIVPNFEEIWPSGRQS--NKKKECDPATGINYVLSAMQEGLPGSRGEVFTTVGKPKIECHQYDNPIECYSTQSIQEMSEKG 167 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002529 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002529 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 16
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BLAST of EMLSAG00000002529 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000002529 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002529 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002529 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 3
BLAST of EMLSAG00000002529 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s14:1093206..1130691+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002529-685295 ID=EMLSAG00000002529-685295|Name=EMLSAG00000002529|organism=Lepeophtheirus salmonis|type=gene|length=37486bp|location=Sequence derived from alignment at LSalAtl2s14:1093206..1130691+ (Lepeophtheirus salmonis)back to top Add to Basket
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