EMLSAG00000003041, EMLSAG00000003041-685807 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003041
Unique NameEMLSAG00000003041-685807
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003041 vs. L. salmonis peptides
Match: EMLSAP00000003041 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1729:42835:43410:1 gene:EMLSAG00000003041 transcript:EMLSAT00000003041 description:"maker-LSalAtl2s1729-augustus-gene-0.6")

HSP 1 Score: 239.965 bits (611), Expect = 1.384e-82
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 
Query:    1 MCDDCKPSTSMNKTTRTNLKNTVRDIVTYWVAAPSGNTKKDSEVSTESSSDDDDQSTSVPQNKNQPIGPDASSASEIKEIRKKKILKIMYNSRKKHREQVSQYSLSHLCFFNNYVV 116
            MCDDCKPSTSMNKTTRTNLKNTVRDIVTYWVAAPSGNTKKDSEVSTESSSDDDDQSTSVPQNKNQPIGPDASSASEIKEIRKKKILKIMYNSRKKHREQVSQYSLSHLCFFNNYVV
Sbjct:    1 MCDDCKPSTSMNKTTRTNLKNTVRDIVTYWVAAPSGNTKKDSEVSTESSSDDDDQSTSVPQNKNQPIGPDASSASEIKEIRKKKILKIMYNSRKKHREQVSQYSLSHLCFFNNYVV 116
[Close]
BLAST of EMLSAG00000003041 vs. L. salmonis peptides
Match: EMLSAP00000009504 (pep:novel supercontig:LSalAtl2s:LSalAtl2s6125:34:2816:-1 gene:EMLSAG00000009504 transcript:EMLSAT00000009504 description:"maker-LSalAtl2s6125-augustus-gene-0.2")

HSP 1 Score: 114.775 bits (286), Expect = 2.136e-31
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:    1 MCDDCKPSTSMNKTTRTNLKNTVRDIVTYWVAAPSGNTKKDSEVSTESSSDDDDQSTSVPQNKNQPIGPDASSASEIKEIRKKKILKIMYNSRKKHREQ 99
            MC   K STS+NKT+   L+ TV+++V YW+    G+TK D+EVSTESSS+D+DQ TSVPQNK  PIGPD  SASE +EIR+KKILK++ +  KK REQ
Sbjct:   94 MCGHNKHSTSINKTSSAELEETVKEMVNYWITTLPGDTKMDTEVSTESSSNDNDQCTSVPQNKRIPIGPDV-SASEKREIRRKKILKMVNDLMKKRREQ 191
[Close]
BLAST of EMLSAG00000003041 vs. L. salmonis peptides
Match: EMLSAP00000005344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2880:441:1295:1 gene:EMLSAG00000005344 transcript:EMLSAT00000005344 description:"maker-LSalAtl2s2880-augustus-gene-0.4")

HSP 1 Score: 109.768 bits (273), Expect = 1.291e-30
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0 
Query:    1 MCDDCKPSTSMNKTTRTNLKNTVRDIVTYWVAAPSGNTKKDSEVSTESSSDDDDQSTSVPQNKNQPIGPDASSASEIKEIRKKKILKIMYNSRKKHREQ 99
            MC   KPS SMNKT+   L+ TV+++V YW++A  G+TK D EVST SSS+D+DQ  SVP NK + IGPD  SASE +EI++ KI+KIMYNS KK REQ
Sbjct:   41 MCGHNKPSNSMNKTSSVQLEETVKEMVNYWISALPGDTKIDCEVSTGSSSNDNDQ--SVPTNKRKTIGPDV-SASEKREIQRNKIMKIMYNSIKKRREQ 136
[Close]
BLAST of EMLSAG00000003041 vs. L. salmonis peptides
Match: EMLSAP00000007866 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4623:1701:4826:-1 gene:EMLSAG00000007866 transcript:EMLSAT00000007866 description:"maker-LSalAtl2s4623-augustus-gene-0.5")

HSP 1 Score: 89.3521 bits (220), Expect = 1.273e-21
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:   11 MNKTTRTNLKNTVRDIVTYWVAAPSGNTKKDSEVSTESSSDDDDQSTSVPQNKNQPIGPDASSASEIKEIRKKKILKIMYNSRKKHREQ 99
            MNKT+ T L+ TV+++V  W+    G+TK D EVST SSS+D+DQSTSV  +   PIGP   SASE +EIR+ KILKI+YNS KK  EQ
Sbjct:    1 MNKTSSTELEETVKEMVNNWITTLPGDTKMDPEVSTXSSSNDNDQSTSV--SIRIPIGPHV-SASEKREIRRNKILKIVYNSMKKRGEQ 86
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003041 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003041 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003041 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000030411.384e-82100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1729:4283... [more]
EMLSAP000000095042.136e-3159.60pep:novel supercontig:LSalAtl2s:LSalAtl2s6125:34:2... [more]
EMLSAP000000053441.291e-3059.60pep:novel supercontig:LSalAtl2s:LSalAtl2s2880:441:... [more]
EMLSAP000000078661.273e-2157.30pep:novel supercontig:LSalAtl2s:LSalAtl2s4623:1701... [more]
back to top
BLAST of EMLSAG00000003041 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003041 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003041 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003041 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1729supercontigLSalAtl2s1729:42835..43410 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1729-augustus-gene-0.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003041 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003041EMLSAT00000003041-698888Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1729:42835..43410+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003041-685807 ID=EMLSAG00000003041-685807|Name=EMLSAG00000003041|organism=Lepeophtheirus salmonis|type=gene|length=576bp|location=Sequence derived from alignment at LSalAtl2s1729:42835..43410+ (Lepeophtheirus salmonis)
ATCCGAAGAACCTAAAGAATTACAATGATGACGACATATCTTGTCAGTCT
TCTGACTCGGACTCAAAAGAAGTAAGTGGTCACTCATATTTTTACAAGTT
AAAAATAAAATCTTCAATATTTATAGCCTCCAAGTAAAAAAATGTGTGAT
GATTGCAAACCATCAACTTCGATGAATAAAACCACCCGCACCAATTTGAA
AAATACAGTGAGAGACATAGTTACTTATTGGGTAGCAGCTCCCTCTGGAA
ATACTAAAAAAGATTCCGAAGTATCAACTGAGTCATCATCCGATGACGAC
GATCAAAGGTATAATGAAATTAATCTATTTTCTTTTGTCAAAATATGTAG
ACTTAATGATCCGTGATTTAAAAAATGTGTTCTAGTACAAGTGTACCTCA
AAATAAAAATCAACCTATTGGACCTGATGCATCATCAGCTTCAGAAATCA
AGGAGATTCGAAAGAAAAAGATCTTGAAAATAATGTATAATTCAAGGAAG
AAGCACAGAGAACAGGTTAGTCAATATTCATTGAGCCATCTTTGCTTTTT
TAATAACTATGTAGTATAAATCATTT
back to top
Add to Basket