EMLSAG00000003294, EMLSAG00000003294-686060 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003294
Unique NameEMLSAG00000003294-686060
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003294 vs. C. finmarchicus
Match: gi|592913966|gb|GAXK01044409.1| (TSA: Calanus finmarchicus comp242012_c6_seq17 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.669e+0
Identity = 15/49 (30.61%), Postives = 25/49 (51.02%), Query Frame = 0
Query:  125 QPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYK 173
            +P+I+ ++ L      FL+H+ S  TFCP   + I NM  +    +  K
Sbjct: 1865 RPNIDNRVALIPME*SFLHHFPSKPTFCPWLFQVI*NMLRIWWQKSVIK 2011          
BLAST of EMLSAG00000003294 vs. C. finmarchicus
Match: gi|592763457|gb|GAXK01191110.1| (TSA: Calanus finmarchicus comp2330419_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.945e+0
Identity = 15/41 (36.59%), Postives = 25/41 (60.98%), Query Frame = 0
Query:   33 CELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCR 73
            CEL L+ IL+ ++S  +G+T VF  +  F G C    ++C+
Sbjct:  185 CEL-LSEILNREVSLGKGRTEVFGMLYCFPGLCSCIGRICK 304          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000003294 (pep:novel supercontig:LSalAtl2s:LSalAtl2s180:504339:505109:-1 gene:EMLSAG00000003294 transcript:EMLSAT00000003294 description:"maker-LSalAtl2s180-augustus-gene-4.20")

HSP 1 Score: 456.447 bits (1173), Expect = 1.598e-164
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MXFEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLDAAK 222
            MXFEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLDAAK
Sbjct:    1 MXFEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLDAAK 222          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1427481:1429315:-1 gene:EMLSAG00000002142 transcript:EMLSAT00000002142 description:"snap_masked-LSalAtl2s139-processed-gene-14.19")

HSP 1 Score: 101.293 bits (251), Expect = 2.845e-25
Identity = 67/230 (29.13%), Postives = 112/230 (48.70%), Query Frame = 0
Query:    3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIY--IPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTN---------HFEVKNTTFYQPDINEQLH-LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLD 219
            F E  I++ V+ +A+  L  L  H G    C LKL +I   +     G  Y+F   IS  G SC+   K+C  + +Y  +P  C    + C  L+  ++I+C         P+TN         +  ++N T      NE++  +A K+VKFLYH F+TS+ CP+ L+++   +     GT YK  + ++T      CE   ++C N+ + +P   +C   + DC+ P+D
Sbjct:   28 FSEAEISDEVSGVAEEVLDQLASHFGAEDGCSLKLENITDVKTQVVAGTNYLFSLEISSDGESCENEVKICSDVKVYKPLPFACSSRIDTCLSLVESEKILCI--------PSTNEDPPLVIGEYSSIENVTE-----NEEIQKVAQKAVKFLYHLFNTSSACPIHLREVVQASEQIVDGTNYKLEIQVETDGANFECEYVQKQCSNIIVHEP-LAHCPHDEEDCILPVD 243          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1473318:1476139:1 gene:EMLSAG00000002146 transcript:EMLSAT00000002146 description:"snap_masked-LSalAtl2s139-processed-gene-14.16")

HSP 1 Score: 86.6557 bits (213), Expect = 1.580e-20
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0
Query:    3 FEEVPINNTVTNIAKLSLRHLRHHLG-FNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGS-CKYSPKLCRFI-IIYIPKK-CYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFY----QPDINEQLH-LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217
            F  +PI+  V  IA   L  ++ + G     CEL  +HI  A+ S +Q   +  D  IS  G+ C    K C  + ++ IP   C +S + C  LI +D I+C         P+ +    ++  FY     P  N  +  +A +S  FLYH+F+T+  CP+ + KI + +     G  Y  +++++T  I+  CE E + C++V + +P+   C    + CL P
Sbjct:   37 FSPIPIHGAVLTIADSVLEEIKPYYGILGHECELTXDHIYHAESSISQEIKFKLDLKISSIGTHCIEETKTCIGVTVLVIPIDICSESYQPCFKLIDRDNILCI--------PDLSVHRYEDFNFYTEILDPSSNPMIQKVAQESTNFLYHFFNTTHPCPLHVTKILHASEQMDHGINYLLDIEVETNEIDFYCEHEVKHCKSVQLHQPSPHLCPFGKHFCLIP 252          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1478126:1479135:-1 gene:EMLSAG00000002147 transcript:EMLSAT00000002147 description:"maker-LSalAtl2s139-augustus-gene-14.29")

HSP 1 Score: 68.9366 bits (167), Expect = 1.409e-14
Identity = 53/223 (23.77%), Postives = 98/223 (43.95%), Query Frame = 0
Query:    3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKK--CYKSEELCEVLIGKDRIMCTS---FDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMT-SMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPL 218
            +E + ++ +V  +A   +  L+ + G    C+L +  I +A+L  ++   Y     ++  G  C+   K C  + I+IP+   C     +C  L     I CT     D      N +  +V N     P + E   +  ++ KFLYH F T+  CP+ L+++      +      Y+  L ++T   +  CE  ++ C+NV + +P    C    + CL P+
Sbjct:   10 YEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNA-HTDPILKE---IGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKF-CLIPV 227          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000007005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s398:305820:307985:1 gene:EMLSAG00000007005 transcript:EMLSAT00000007005 description:"maker-LSalAtl2s398-snap-gene-3.25")

HSP 1 Score: 68.5514 bits (166), Expect = 1.068e-13
Identity = 55/222 (24.77%), Postives = 97/222 (43.69%), Query Frame = 0
Query:    3 FEEVPI---NNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCT---SFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPL 218
            FE++PI   NN     A   L  L+     ++ C L +  ++ +  + + G    F  +  FS   K   + C  +    P+ C    E CE L+    + CT     ++ FF     + E  ++    P I   L++A K+ K+LY +F TS  CP+ L ++         G  Y+  + ++T   +  CE   + CENV + +P  + C   +  C+ P+
Sbjct:   29 FEDIPIIFSNNDDFVTATSGLTQLKQFFKSDVNCPLAIQEVIGSHTNISDGFINTFMDLKIFS---KCGSQFCSNVHFQKPENC----ESCENLVDVSNVDCTYVSVVEEGFFAGGFTNIEAPHS---DPII---LNVAKKATKYLYGFFDTSNPCPLHLVEVIRAKQQAVMGFNYELEIQVETNGADFDCEHIIKNCENVRVHEPIAEFCPHEEPSCVVPV 237          

HSP 2 Score: 51.2174 bits (121), Expect = 6.160e-8
Identity = 44/211 (20.85%), Postives = 80/211 (37.91%), Query Frame = 0
Query:    8 INNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217
            I+  + +I K  +  + +  G    C L   ++  AQ     G  ++ D   S  G  C    K+C  + I+ P      E+ C  L   + I C   +                         QL L  ++ KF YH+F T+  C +    +++   ++     Y     L+T   E+GC+   + C+NV + +   + C   +  C+ P
Sbjct:  265 IDEEIISIGKGVMDQIPNSFGLKNHCYLNFENVHRAQSQVVAGTNFIMDIEFSTHGIHCPTEHKICYNVKIFRPLPYQCQEDKCLSLTQSEDINCVPIEAS---------------------KSQL-LGEEAAKFFYHFFDTNIACQVH---VNDAQILKNVNDVYHMEFQLETRKSEEGCKSIKKNCKNVRVREIKPQLCPHNNPICIVP 450          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000004427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:166619:167331:1 gene:EMLSAG00000004427 transcript:EMLSAT00000004427 description:"maker-LSalAtl2s231-augustus-gene-1.7")

HSP 1 Score: 50.447 bits (119), Expect = 2.143e-8
Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 0
Query:  134 LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217
            +A ++ KFLYH F TS  CP+ +K +   T      T Y+  L ++T   +  C+   + C N+ + +P    C    + CLFP
Sbjct:   42 VALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQF-CLFP 124          
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002143 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1444392:1447618:-1 gene:EMLSAG00000002143 transcript:EMLSAT00000002143 description:"snap_masked-LSalAtl2s139-processed-gene-14.13")

HSP 1 Score: 48.1358 bits (113), Expect = 2.603e-7
Identity = 25/82 (30.49%), Postives = 43/82 (52.44%), Query Frame = 0
Query:    3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKKC 83
            F  +P+  ++ NI + +L  L+ + G    C+LKL+ +  AQ+ S     Y+ D  +S  G +C    K+C+ + IY P  C
Sbjct:   27 FIRIPVTESIINITQQTLEGLKLYFGVEDHCDLKLHKVFCAQIMSHNSVNYLVDIRVSSHGYNCNKETKICQNLGIYSPNNC 108          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003294 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003294 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592913966|gb|GAXK01044409.1|3.669e+030.61TSA: Calanus finmarchicus comp242012_c6_seq17 tran... [more]
gi|592763457|gb|GAXK01191110.1|3.945e+036.59TSA: Calanus finmarchicus comp2330419_c0_seq1 tran... [more]
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BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000032941.598e-164100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s180:50433... [more]
EMLSAP000000021422.845e-2529.13pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14274... [more]
EMLSAP000000021461.580e-2028.57pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14733... [more]
EMLSAP000000021471.409e-1423.77pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14781... [more]
EMLSAP000000070051.068e-1324.77pep:novel supercontig:LSalAtl2s:LSalAtl2s398:30582... [more]
EMLSAP000000044272.143e-830.95pep:novel supercontig:LSalAtl2s:LSalAtl2s231:16661... [more]
EMLSAP000000021432.603e-730.49pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14443... [more]
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BLAST of EMLSAG00000003294 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003294 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003294 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003294 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s180supercontigLSalAtl2s180:504339..505109 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s180-augustus-gene-4.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003294 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003294EMLSAT00000003294-699141Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s180:504339..505109-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003294-686060 ID=EMLSAG00000003294-686060|Name=EMLSAG00000003294|organism=Lepeophtheirus salmonis|type=gene|length=771bp|location=Sequence derived from alignment at LSalAtl2s180:504339..505109- (Lepeophtheirus salmonis)
ATGANTTTTGAAGAAGTACCAATTAATAATACAGTTACAAATATAGCAAA GTTAAGTTTACGGCATTTAAGACATCATTTAGGTTTCAATCTGACTTGCG AATTGAAATTAAATCACATCTTGAGTGCTCAATTATCCGTAAGGTTTCTT CTATGATAAGTATCAAATTATACTTTAATTTTTATTATAGTCCACGCAAG GTAAGACTTATGTGTTTGACTATATGATTAGTTTCTCAGGAAGCTGTAAA TACAGCCCGAAATTATGTCGGTTCATCATTATTTATATTCCAAAGAAATG TTATAAATCAGAGGAATTATGTGAGGTGCTTATCGGAAAGGATCGAATTA TGTGTACCTCATTTGACAAACATTTTTTCAAACCTAATACCAATCATTTT GAAGTAAAGAATACTACATTTTATCAACCAGACATCAATGAACAGCTACA TTTGGCATCGAAATCTGTAAAATTTTTATATCATTACTTCTCCACGTCTA CATTTTGTCCCATGGAGCTCAAGAAGATATCCAATATGACATCGATGGTA ATATTACTTGACATTATTTAATTACATGAATACATTTCAAAAAATTACAG AGAGGTGGAGGAACTTACTACAAATTCAATTTGGATCTTCAAACAATTCC AATAGAAAAAGGATGTGAGAAGGAGTATAGAAGGTGTGAAAATGTGCACA TTTTCAAACCAAACGAGAAAAACTGCAAATTACTGGATTACGATTGCTTA TTCCCACTTGATGCTGCAAAA
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