EMLSAG00000003294, EMLSAG00000003294-686060 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003294 vs. C. finmarchicus
Match: gi|592913966|gb|GAXK01044409.1| (TSA: Calanus finmarchicus comp242012_c6_seq17 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 3.669e+0 Identity = 15/49 (30.61%), Postives = 25/49 (51.02%), Query Frame = 0 Query: 125 QPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYK 173 +P+I+ ++ L FL+H+ S TFCP + I NM + + K Sbjct: 1865 RPNIDNRVALIPME*SFLHHFPSKPTFCPWLFQVI*NMLRIWWQKSVIK 2011
BLAST of EMLSAG00000003294 vs. C. finmarchicus
Match: gi|592763457|gb|GAXK01191110.1| (TSA: Calanus finmarchicus comp2330419_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 3.945e+0 Identity = 15/41 (36.59%), Postives = 25/41 (60.98%), Query Frame = 0 Query: 33 CELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCR 73 CEL L+ IL+ ++S +G+T VF + F G C ++C+ Sbjct: 185 CEL-LSEILNREVSLGKGRTEVFGMLYCFPGLCSCIGRICK 304
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000003294 (pep:novel supercontig:LSalAtl2s:LSalAtl2s180:504339:505109:-1 gene:EMLSAG00000003294 transcript:EMLSAT00000003294 description:"maker-LSalAtl2s180-augustus-gene-4.20") HSP 1 Score: 456.447 bits (1173), Expect = 1.598e-164 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0 Query: 1 MXFEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLDAAK 222 MXFEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLDAAK Sbjct: 1 MXFEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLDAAK 222
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1427481:1429315:-1 gene:EMLSAG00000002142 transcript:EMLSAT00000002142 description:"snap_masked-LSalAtl2s139-processed-gene-14.19") HSP 1 Score: 101.293 bits (251), Expect = 2.845e-25 Identity = 67/230 (29.13%), Postives = 112/230 (48.70%), Query Frame = 0 Query: 3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIY--IPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTN---------HFEVKNTTFYQPDINEQLH-LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPLD 219 F E I++ V+ +A+ L L H G C LKL +I + G Y+F IS G SC+ K+C + +Y +P C + C L+ ++I+C P+TN + ++N T NE++ +A K+VKFLYH F+TS+ CP+ L+++ + GT YK + ++T CE ++C N+ + +P +C + DC+ P+D Sbjct: 28 FSEAEISDEVSGVAEEVLDQLASHFGAEDGCSLKLENITDVKTQVVAGTNYLFSLEISSDGESCENEVKICSDVKVYKPLPFACSSRIDTCLSLVESEKILCI--------PSTNEDPPLVIGEYSSIENVTE-----NEEIQKVAQKAVKFLYHLFNTSSACPIHLREVVQASEQIVDGTNYKLEIQVETDGANFECEYVQKQCSNIIVHEP-LAHCPHDEEDCILPVD 243
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1473318:1476139:1 gene:EMLSAG00000002146 transcript:EMLSAT00000002146 description:"snap_masked-LSalAtl2s139-processed-gene-14.16") HSP 1 Score: 86.6557 bits (213), Expect = 1.580e-20 Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0 Query: 3 FEEVPINNTVTNIAKLSLRHLRHHLG-FNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGS-CKYSPKLCRFI-IIYIPKK-CYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFY----QPDINEQLH-LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217 F +PI+ V IA L ++ + G CEL +HI A+ S +Q + D IS G+ C K C + ++ IP C +S + C LI +D I+C P+ + ++ FY P N + +A +S FLYH+F+T+ CP+ + KI + + G Y +++++T I+ CE E + C++V + +P+ C + CL P Sbjct: 37 FSPIPIHGAVLTIADSVLEEIKPYYGILGHECELTXDHIYHAESSISQEIKFKLDLKISSIGTHCIEETKTCIGVTVLVIPIDICSESYQPCFKLIDRDNILCI--------PDLSVHRYEDFNFYTEILDPSSNPMIQKVAQESTNFLYHFFNTTHPCPLHVTKILHASEQMDHGINYLLDIEVETNEIDFYCEHEVKHCKSVQLHQPSPHLCPFGKHFCLIP 252
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1478126:1479135:-1 gene:EMLSAG00000002147 transcript:EMLSAT00000002147 description:"maker-LSalAtl2s139-augustus-gene-14.29") HSP 1 Score: 68.9366 bits (167), Expect = 1.409e-14 Identity = 53/223 (23.77%), Postives = 98/223 (43.95%), Query Frame = 0 Query: 3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKK--CYKSEELCEVLIGKDRIMCTS---FDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMT-SMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPL 218 +E + ++ +V +A + L+ + G C+L + I +A+L ++ Y ++ G C+ K C + I+IP+ C +C L I CT D N + +V N P + E + ++ KFLYH F T+ CP+ L+++ + Y+ L ++T + CE ++ C+NV + +P C + CL P+ Sbjct: 10 YEPIAVDESVRTVASKVVDQLKSYFGVREECQLIIEEIYNAKLHVSKESIYDLTMKLTVMGPGCEPETKTCSSVKIFIPQPQYCEDPSGICHNLTETYEIQCTPELVVDPAVPSINEDFEDVPNA-HTDPILKE---IGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKF-CLIPV 227
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000007005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s398:305820:307985:1 gene:EMLSAG00000007005 transcript:EMLSAT00000007005 description:"maker-LSalAtl2s398-snap-gene-3.25") HSP 1 Score: 68.5514 bits (166), Expect = 1.068e-13 Identity = 55/222 (24.77%), Postives = 97/222 (43.69%), Query Frame = 0 Query: 3 FEEVPI---NNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSGSCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCT---SFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFPL 218 FE++PI NN A L L+ ++ C L + ++ + + + G F + FS K + C + P+ C E CE L+ + CT ++ FF + E ++ P I L++A K+ K+LY +F TS CP+ L ++ G Y+ + ++T + CE + CENV + +P + C + C+ P+ Sbjct: 29 FEDIPIIFSNNDDFVTATSGLTQLKQFFKSDVNCPLAIQEVIGSHTNISDGFINTFMDLKIFS---KCGSQFCSNVHFQKPENC----ESCENLVDVSNVDCTYVSVVEEGFFAGGFTNIEAPHS---DPII---LNVAKKATKYLYGFFDTSNPCPLHLVEVIRAKQQAVMGFNYELEIQVETNGADFDCEHIIKNCENVRVHEPIAEFCPHEEPSCVVPV 237 HSP 2 Score: 51.2174 bits (121), Expect = 6.160e-8 Identity = 44/211 (20.85%), Postives = 80/211 (37.91%), Query Frame = 0 Query: 8 INNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKKCYKSEELCEVLIGKDRIMCTSFDKHFFKPNTNHFEVKNTTFYQPDINEQLHLASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217 I+ + +I K + + + G C L ++ AQ G ++ D S G C K+C + I+ P E+ C L + I C + QL L ++ KF YH+F T+ C + +++ ++ Y L+T E+GC+ + C+NV + + + C + C+ P Sbjct: 265 IDEEIISIGKGVMDQIPNSFGLKNHCYLNFENVHRAQSQVVAGTNFIMDIEFSTHGIHCPTEHKICYNVKIFRPLPYQCQEDKCLSLTQSEDINCVPIEAS---------------------KSQL-LGEEAAKFFYHFFDTNIACQVH---VNDAQILKNVNDVYHMEFQLETRKSEEGCKSIKKNCKNVRVREIKPQLCPHNNPICIVP 450
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000004427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:166619:167331:1 gene:EMLSAG00000004427 transcript:EMLSAT00000004427 description:"maker-LSalAtl2s231-augustus-gene-1.7") HSP 1 Score: 50.447 bits (119), Expect = 2.143e-8 Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 0 Query: 134 LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217 +A ++ KFLYH F TS CP+ +K + T T Y+ L ++T + C+ + C N+ + +P C + CLFP Sbjct: 42 VALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQF-CLFP 124
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Match: EMLSAP00000002143 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1444392:1447618:-1 gene:EMLSAG00000002143 transcript:EMLSAT00000002143 description:"snap_masked-LSalAtl2s139-processed-gene-14.13") HSP 1 Score: 48.1358 bits (113), Expect = 2.603e-7 Identity = 25/82 (30.49%), Postives = 43/82 (52.44%), Query Frame = 0 Query: 3 FEEVPINNTVTNIAKLSLRHLRHHLGFNLTCELKLNHILSAQLSSTQGKTYVFDYMISFSG-SCKYSPKLCRFIIIYIPKKC 83 F +P+ ++ NI + +L L+ + G C+LKL+ + AQ+ S Y+ D +S G +C K+C+ + IY P C Sbjct: 27 FIRIPVTESIINITQQTLEGLKLYFGVEDHCDLKLHKVFCAQIMSHNSVNYLVDIRVSSHGYNCNKETKICQNLGIYSPNNC 108 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003294 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003294 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000003294 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 7
BLAST of EMLSAG00000003294 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003294 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003294 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003294 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s180:504339..505109- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003294-686060 ID=EMLSAG00000003294-686060|Name=EMLSAG00000003294|organism=Lepeophtheirus salmonis|type=gene|length=771bp|location=Sequence derived from alignment at LSalAtl2s180:504339..505109- (Lepeophtheirus salmonis)back to top Add to Basket
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