EMLSAG00000003561, EMLSAG00000003561-686327 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003561
Unique NameEMLSAG00000003561-686327
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592916106|gb|GAXK01042269.1| (TSA: Calanus finmarchicus comp299868_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 3.077e-3
Identity = 20/56 (35.71%), Postives = 26/56 (46.43%), Query Frame = 0 
Query:   39 RECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPR 94
            R CQFP I G  S + CIS    +G+++C      DG+           C P CPR
Sbjct: 2650 RPCQFPFIFGGVSRTGCISDSDPEGLFWCSTSVDSDGVHMGQG-GHWAHCSPSCPR 2814
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592770875|gb|GAXK01183693.1| (TSA: Calanus finmarchicus comp56428_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 7.858e-2
Identity = 25/100 (25.00%), Postives = 37/100 (37.00%), Query Frame = 0 
Query:    1 IRTPKPPTDNV-------TCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCP 93
            ++ PK PTDN               + E   +  +  E CL+     C FP      S S C + G  +G  +C V    +G    ++      CK  CP
Sbjct:   95 VQDPKNPTDNCFEDAQFSVADGRFWSNEACNVLKSTPEACLSTSSNPCIFPFTYQGVSYSSCSTAGSENGAAWCAVQVDQEGEVIKNAWE---DCKAGCP 385
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592853498|gb|GAXK01104046.1| (TSA: Calanus finmarchicus comp271928_c0_seq13 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 3.679e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   31 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIP 97
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct: 1033 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 1209
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592853497|gb|GAXK01104047.1| (TSA: Calanus finmarchicus comp271928_c0_seq14 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 3.729e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   31 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIP 97
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct:  519 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 695
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592853504|gb|GAXK01104040.1| (TSA: Calanus finmarchicus comp271928_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 3.850e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   31 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIP 97
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct: 3569 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 3745
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592853505|gb|GAXK01104039.1| (TSA: Calanus finmarchicus comp271928_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 3.852e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   31 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIP 97
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct: 3635 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 3811
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592770874|gb|GAXK01183694.1| (TSA: Calanus finmarchicus comp56428_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 5.008e-1
Identity = 18/66 (27.27%), Postives = 27/66 (40.91%), Query Frame = 0 
Query:   10 NVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDG 75
            N  C+  L T +      +    CL++    C FP      S S C +IG  +G  +C V    +G
Sbjct:  108 NEACNGTLGTSQRTVPNKSANLACLSISSNPCIFPFTYRGVSHSSCTAIGSQNGAAWCAVQVDQNG 305
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592770876|gb|GAXK01183692.1| (TSA: Calanus finmarchicus comp56428_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 5.014e-1
Identity = 18/66 (27.27%), Postives = 27/66 (40.91%), Query Frame = 0 
Query:   10 NVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDG 75
            N  C+  L T +      +    CL++    C FP      S S C +IG  +G  +C V    +G
Sbjct:  114 NEACNGTLGTSQRTVPNKSANLACLSISSNPCIFPFTYRGVSHSSCTAIGSQNGAAWCAVQVDQNG 311
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592879929|gb|GAXK01077972.1| (TSA: Calanus finmarchicus comp1132639_c0_seq31 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.296e+0
Identity = 22/69 (31.88%), Postives = 31/69 (44.93%), Query Frame = 0 
Query:   31 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVY--FCPVHTLPDGMPTPDSLSVLGICKPDCPRLIP 97
            + C T++  EC FP      +   C S+     VY  +C   T  DG     S+   G+C PDCP + P
Sbjct: 1382 QSCYTMEGNECVFPFDYKEVTYYNCSSVD----VYQPWCATET--DGT----SIVSWGLCLPDCPYVEP 1558
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Match: gi|592845951|gb|GAXK01111593.1| (TSA: Calanus finmarchicus comp52961_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.490e+0
Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0 
Query:   39 RECQFPIIIGNTSISMCISIGLGDGVYFC--PVHTLPDGMPTPDSLSVLGICKPDCPRLIPMP 99
            + CQ P + G      CI+ G  DG Y+C   V    + +P  D+ +    C P CP +   P
Sbjct:  171 QACQLPFVWGGKLQEGCITDGDPDGKYWCSTKVDGERNHIPNGDNWA---HCSPQCPGVQVEP 350
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BLAST of EMLSAG00000003561 vs. L. salmonis peptides
Match: EMLSAP00000003561 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:14612:15869:1 gene:EMLSAG00000003561 transcript:EMLSAT00000003561 description:"maker-LSalAtl2s1957-augustus-gene-0.6")

HSP 1 Score: 305.449 bits (781), Expect = 3.486e-107
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 
Query:    1 IRTPKPPTDNVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIPMPIAITEDMSSTPDINKTPQFGTLPPNTPFPITTATTTMNTITTTCKFIQSKNLTYLN 155
            IRTPKPPTDNVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIPMPIAITEDMSSTPDINKTPQFGTLPPNTPFPITTATTTMNTITTTCKFIQSKNLTYLN
Sbjct:    1 IRTPKPPTDNVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIPMPIAITEDMSSTPDINKTPQFGTLPPNTPFPITTATTTMNTITTTCKFIQSKNLTYLN 155
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BLAST of EMLSAG00000003561 vs. L. salmonis peptides
Match: EMLSAP00000003562 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:23934:24835:-1 gene:EMLSAG00000003562 transcript:EMLSAT00000003562 description:"maker-LSalAtl2s1957-augustus-gene-0.7")

HSP 1 Score: 251.906 bits (642), Expect = 6.716e-86
Identity = 139/145 (95.86%), Postives = 140/145 (96.55%), Query Frame = 0 
Query:   11 VTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIPMPIAITEDMSSTPDINKTPQFGTLPPNTPFPITTATTTMNTITTTCKFIQSKNLTYLN 155
            VT SLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGM TPDSLSVLGICKPDCPRLIPMPIAITEDM+STPDINKTPQFGT PPNTPFPI TATTTMNTITTTCKFIQSKNL YLN
Sbjct:   17 VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIPMPIAITEDMNSTPDINKTPQFGTPPPNTPFPIQTATTTMNTITTTCKFIQSKNLKYLN 161
[Close]
BLAST of EMLSAG00000003561 vs. L. salmonis peptides
Match: EMLSAP00000003258 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1791:10266:11252:-1 gene:EMLSAG00000003258 transcript:EMLSAT00000003258 description:"maker-LSalAtl2s1791-snap-gene-0.5")

HSP 1 Score: 120.553 bits (301), Expect = 2.724e-35
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0 
Query:    1 IRTPKPPTDNVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPV 69
            IRT KPPTDNVT SLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLG+G+   P+
Sbjct:   35 IRTSKPPTDNVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPI 103
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003561 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003561 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 20
Match NameE-valueIdentityDescription
gi|592916106|gb|GAXK01042269.1|3.077e-335.71TSA: Calanus finmarchicus comp299868_c0_seq1 trans... [more]
gi|592770875|gb|GAXK01183693.1|7.858e-225.00TSA: Calanus finmarchicus comp56428_c3_seq2 transc... [more]
gi|592853498|gb|GAXK01104046.1|3.679e-129.85TSA: Calanus finmarchicus comp271928_c0_seq13 tran... [more]
gi|592853497|gb|GAXK01104047.1|3.729e-129.85TSA: Calanus finmarchicus comp271928_c0_seq14 tran... [more]
gi|592853504|gb|GAXK01104040.1|3.850e-129.85TSA: Calanus finmarchicus comp271928_c0_seq7 trans... [more]
gi|592853505|gb|GAXK01104039.1|3.852e-129.85TSA: Calanus finmarchicus comp271928_c0_seq6 trans... [more]
gi|592770874|gb|GAXK01183694.1|5.008e-127.27TSA: Calanus finmarchicus comp56428_c3_seq3 transc... [more]
gi|592770876|gb|GAXK01183692.1|5.014e-127.27TSA: Calanus finmarchicus comp56428_c3_seq1 transc... [more]
gi|592879929|gb|GAXK01077972.1|1.296e+031.88TSA: Calanus finmarchicus comp1132639_c0_seq31 tra... [more]
gi|592845951|gb|GAXK01111593.1|1.490e+030.16TSA: Calanus finmarchicus comp52961_c0_seq1 transc... [more]

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BLAST of EMLSAG00000003561 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000035613.486e-107100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:1461... [more]
EMLSAP000000035626.716e-8695.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:2393... [more]
EMLSAP000000032582.724e-3588.41pep:novel supercontig:LSalAtl2s:LSalAtl2s1791:1026... [more]
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BLAST of EMLSAG00000003561 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003561 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003561 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003561 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1957supercontigLSalAtl2s1957:14612..15869 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1957-augustus-gene-0.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003561 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003561EMLSAT00000003561-699408Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1957:14612..15869+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003561-686327 ID=EMLSAG00000003561-686327|Name=EMLSAG00000003561|organism=Lepeophtheirus salmonis|type=gene|length=1258bp|location=Sequence derived from alignment at LSalAtl2s1957:14612..15869+ (Lepeophtheirus salmonis)
ATAAGAACTCCAAAACCTCCAACTGATAATGGTAAATGCTATTTCTAATA
ACTTTACATTTTAATGTAGTGAAGATTCAATGTCTTCTCAATCAAAGAAT
ATAAATGATGCTTTTTCTGATTTTACAGTTACTTGTTCCCTACTTCTAAC
AACAATTGAGGAAGAAACGATTGCACCAAATGGTAAAATTTAATTATCTT
ATCTCATCATCTTTAATTAATCAACAATAGAATTTATCACTTGAAATCAT
TAACTATTTTATTCACTTATAGTCACTGAACGTTGTTTGACGGTTGACGA
TAGGGAATGTCAATTCCCGATTATTATCGGGAATACGTCGATTAGTATGT
GTATTAGCATAGGCTTAGGAGATGGTGTATATTTCTGTCCCGTTCATACA
CTACCTGATGGAATGCCTACTCCAGATAGTTTATCAGTTTTAGGGATTTG
CAAACCAGATTGTCCAAGTATATAATCACATAAATTAAACTTACTATATT
AAAAACGATATTTGCGTTCGGTTTATATTTTCATTTTGTTTTGTCAGGAC
TAATTCCTATGCCCATAGCAATAACCGGTGAGTTTTATTGGATATTAAAT
GCGTAAATCAATTATGTTTTTTCTTTTTTCTTGGGCTACAGAGGATATGA
GTTCAACTCCAGACATTAATAAAAGTAAGTACATTTGAGATATATCTTGT
ATTGCATTATTTAATAAAATTATAACTTTTATTTTACAATATAGCACCAC
AATTTGGAACCCTGCCTCCGAATAGTAAGTATATGTTATAGTTTCCAACC
TATTGAAATACCTATATTTTTTTCAGCACCATTTCCGATCACAACTGCAA
CGAGTAAGTTTTAGTTAAATTGTATGACTCACTGATTTAAATGTATATTT
TTCATAAATCTAGCAACTATGAACACAATTACAACTACTTGTAAGTTTAT
TCAAAGCAAAAATCTCACATATTTGAACTAATTATAATTTTTTTAACTTT
ACCAATAAGGACTACATCCATTCGTAAGTATTCAATTCACTTACAATAAT
GAAATATAATACATGTTTTATCATTTTTTACCTTGCATTGTATATTATTT
CAGCATGTACCAATATATTAGGACGTTTAAGATGCATAATTTTATCTCCA
ATATGCGGCATCAATGCAGCTGTAAGACGAAATTGCCGACAAAGATGCAG
TGTATGTGTGCCTTGAATGCCAAAAATGTAATTTCATTGTCTTTTTCTAT
AAAAATTG
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