EMLSAG00000003645, EMLSAG00000003645-686411 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003645
Unique NameEMLSAG00000003645-686411
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003645 vs. C. finmarchicus
Match: gi|592940640|gb|GAXK01017913.1| (TSA: Calanus finmarchicus comp33655_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 8.020e+0
Identity = 14/30 (46.67%), Postives = 15/30 (50.00%), Query Frame = 0 
Query:  101 NKCCVPKCSSGYDGKTAIARSSLHSFPLDE 130
            N+CC P      DG    AR SLH F L E
Sbjct: 1627 NQCCFPVPRPAVDGVLLCARHSLHLFQLAE 1716
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BLAST of EMLSAG00000003645 vs. L. salmonis peptides
Match: EMLSAP00000003645 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1996:11452:13551:-1 gene:EMLSAG00000003645 transcript:EMLSAT00000003645 description:"snap-LSalAtl2s1996-processed-gene-0.9")

HSP 1 Score: 278.1 bits (710), Expect = 6.234e-97
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 
Query:    1 MYSLWAIKGGHIFLLALQLLFVCEALHLLESHLFDGDVWESLCSDSGKIGSSVDNAFSVENNRANGQLHCASHIVDCSLAMISYLKVTYSTLSYYTMIMPNKCCVPKCSSGYDGKTAIARSSLHSFPLDESSKGA 135
            MYSLWAIKGGHIFLLALQLLFVCEALHLLESHLFDGDVWESLCSDSGKIGSSVDNAFSVENNRANGQLHCASHIVDCSLAMISYLKVTYSTLSYYTMIMPNKCCVPKCSSGYDGKTAIARSSLHSFPLDESSKGA
Sbjct:    1 MYSLWAIKGGHIFLLALQLLFVCEALHLLESHLFDGDVWESLCSDSGKIGSSVDNAFSVENNRANGQLHCASHIVDCSLAMISYLKVTYSTLSYYTMIMPNKCCVPKCSSGYDGKTAIARSSLHSFPLDESSKGA 135
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BLAST of EMLSAG00000003645 vs. L. salmonis peptides
Match: EMLSAP00000012818 (pep:novel supercontig:LSalAtl2s:LSalAtl2s977:162868:163832:-1 gene:EMLSAG00000012818 transcript:EMLSAT00000012818 description:"snap-LSalAtl2s977-processed-gene-1.30")

HSP 1 Score: 76.6406 bits (187), Expect = 4.389e-19
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 
Query:   96 TMIMPNKCCVPKCSSGYDGKTAIARSSLHSFPLDESSKG 134
            + IMPNKCCVPKCSSGYDGK AIAR SLHSFPLDESSKG
Sbjct:    9 SKIMPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKG 47
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BLAST of EMLSAG00000003645 vs. L. salmonis peptides
Match: EMLSAP00000002611 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:424347:426407:1 gene:EMLSAG00000002611 transcript:EMLSAT00000002611 description:"augustus-LSalAtl2s151-processed-gene-4.1")

HSP 1 Score: 78.9518 bits (193), Expect = 5.707e-18
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 
Query:   98 IMPNKCCVPKCSSGYDGKTAIARSSLHSFPLDESSKGA 135
            IMPNKCCVPKC+SGYDGK +IAR SLHSFPLD+SSKGA
Sbjct:  137 IMPNKCCVPKCTSGYDGKPSIARLSLHSFPLDKSSKGA 174
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003645 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003645 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592940640|gb|GAXK01017913.1|8.020e+046.67TSA: Calanus finmarchicus comp33655_c4_seq1 transc... [more]
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BLAST of EMLSAG00000003645 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000036456.234e-97100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1996:1145... [more]
EMLSAP000000128184.389e-1989.74pep:novel supercontig:LSalAtl2s:LSalAtl2s977:16286... [more]
EMLSAP000000026115.707e-1886.84pep:novel supercontig:LSalAtl2s:LSalAtl2s151:42434... [more]
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BLAST of EMLSAG00000003645 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003645 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003645 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003645 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1996supercontigLSalAtl2s1996:11452..13551 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1996-processed-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003645 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003645EMLSAT00000003645-699492Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1996:11452..13551-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003645-686411 ID=EMLSAG00000003645-686411|Name=EMLSAG00000003645|organism=Lepeophtheirus salmonis|type=gene|length=2100bp|location=Sequence derived from alignment at LSalAtl2s1996:11452..13551- (Lepeophtheirus salmonis)
ATGTACTCCTTGTGGGCCATTAAGGGTGGGCACATCTTCCTACTTGCCCT
CCAGCTCTTGTTTGTCTGTGAAGCTCTTCATCTCCTCGAGAGTCACTTAT
TCGATGGTGATGTTTGGGAATCTCTTTGCAGCGACTCCGGCAAAATCGGC
AGCAGTGTGGACAATGCCTTTTCAGTTGAAAACAATCGTGCTAACGGCCA
GCTTCACTGTGCCTCCCACATTGTCGACTGCTCCCTTGCCATGATAAGTA
GGTTTTGTTATGAATGTAGCAACTTTATTTTTTCATGGTGATGTTAACAT
TTGCATAGAATTACCCTGTACTTTTATATTACTTAGTAATAAAGATTGAA
TGAACTTATGTCGGCTTAAAATTAATGTTTTTTGCATCTACAAATCAATT
TGAAACATTACAAGATACTTTTTTAATAAATGTATTACCGTCCATGACCC
TTTTTATTTCATCCATTACACCTCATTTGTGATTTTGAAGGCTATCTTAA
GGTGACTTATAGCACTCTATCCTATGTAATTGTTAAGTAATCATTTTAAA
ATCCAGACTTAATTCATTCTAAGGCAACCCAAATTAAATAAAAATAATTA
AAATTCCTTTATAGTACACAATGGTAAACTTAAGACCATACCAAAAATTA
TTATAAAAGCAAAAAAAACCCAAAAAACTTAACTTATATTTTGATATTAA
TATCTACAAAACTAAATCTTTTCCAAAACTTATTTTGATTGTTATGAAAC
TTGACGATATCCTTCCTCAATATTTCATAGAATAATTCAATCAATTTCAG
AACTAATTATTTAAAAAGATTTATATTAATAATAATGAACTATCTGTATG
TAAGCTCATATTAATATTTTTAGTGACTAATTATCTAATTTGTCATTTTA
TTACATGGAGAATAAAAGAATAGCAATATGTAAACATTGAAGCATAGTGG
AGAGTGAGGATACTTGTTACGGAGGACCCATGTTATATGGTCAATAACTT
TAAAATGTAAAGTTAGCCAACCACCACCCTGTTCTTATACAATTGAATGT
NCTTCCTTTGTTTATCAAATCAACATAAAACCCGGGTTGCCTAATGTTAG
AGTTATAGATAATTTCGACATTTAAATTTTAGGCAKAAAAAGTAATTAAT
TTAGGTAAGTGTATCTTGAGATATATTTCTATTCTAAAACATGAGATTTT
AATTCCATTTTATTAAATGTCATAGTCTAGCATGTTGTTCAATTAAATAA
CATGCTTGTAATATATTATTAGTTTGAATATTCAGTTCACATCATAATTT
ATTTTGATTCAAACACTATGGAGGAGACTTGTTACACCCCATTTTTATTA
TATATAATCATACTATATATAAATATAATATATTCAATTATGTTTTGTTT
TATGTATAATTTCATGTTATACTTTAATATTTTATAGTAAATTATAAAAA
AAATTAAATTTTCTATAAATGTTTTATCTGTWTKTCTMKTTTATCTGATA
TTAAGTATTTATTTTATGCTGACAAACTATTATAAAGAGTAAAATAAATA
TGCTTAAATATAATTAGTTACAGTTTTTACATATTTCCTCCAGTTGTAAC
ATGTCTCCTTCTACCCTGTATCATGGCAAGGCTTACTGGAGTCCTTGATC
ATGGAAATCTAGATAACTGGAACGCTCACGCGTTGAAAAAAATAAAATAA
AATTTCGGTTTTAAGGCTTTAAGGTTTTCTCCCTCTTGTTTTCATACTCA
ACAGCGTATTTAGTATTTACTTAATACAGCTTTGTTCATCATAATTAAAA
TGTACGTTGCTGACAACAATCTAAGTTAATTAATATAATATCTCCTTATT
TAAATAAAGCTTGTGAATTACTTGNAGGTTGTGTGCTTTTCTATCTCTTC
TACGATCTACTTTTGAGCACAGTAAGTAAAATACCCTGTAGCACTTGTGG
ATATGGGATTAATAATTTATCTATATATTTCAGATCATGCCTAATAAGTG
CTGTGTTCCTAAGTGCTCCTCCGGATATGATGGAAAAACAGCCATAGCAA
GGTCATCGCTCCATTCTTTTCCACTGGATGAATCCTCAAAAGGTGCCTGA
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