EMLSAG00000003648, EMLSAG00000003648-686414 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003648 vs. C. finmarchicus
Match: gi|592750995|gb|GAXK01203418.1| (TSA: Calanus finmarchicus comp3748163_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 1.351e+0 Identity = 17/49 (34.69%), Postives = 24/49 (48.98%), Query Frame = 0 Query: 32 SAEKPACSGRGD--KGSWLLNGLVRFYEWTQTSFKLDRILPHSENTLTL 78 +A KP CS D KGSWL+ L + + KL +L N ++L Sbjct: 1123 NAAKPGCSSWRDPVKGSWLITSLCDVFNRYAVNTKLSELLKIVMNQMSL 1269
BLAST of EMLSAG00000003648 vs. C. finmarchicus
Match: gi|592807352|gb|GAXK01147216.1| (TSA: Calanus finmarchicus comp43384_c1_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.742e+0 Identity = 13/36 (36.11%), Postives = 18/36 (50.00%), Query Frame = 0 Query: 58 WTQTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSF 93 W Q F+L+R+LP N + K F + SF F Sbjct: 314 WDQFHFRLNRLLPTRSNVFVFLIRMKIF*FSSFNLF 421
BLAST of EMLSAG00000003648 vs. C. finmarchicus
Match: gi|592947284|gb|GAXK01011269.1| (TSA: Calanus finmarchicus comp22626_c3_seq8 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 8.817e+0 Identity = 10/36 (27.78%), Postives = 20/36 (55.56%), Query Frame = 0 Query: 26 IHFEYGSAEKPACSGRGDKGSWLLNGLVRFYEWTQT 61 I S+++ ++ WLL+GL++F+ W +T Sbjct: 632 IQISNSSSQRKQLKSCSEQLPWLLSGLLKFWSWFET 739
BLAST of EMLSAG00000003648 vs. C. finmarchicus
Match: gi|592947285|gb|GAXK01011268.1| (TSA: Calanus finmarchicus comp22626_c3_seq7 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 9.109e+0 Identity = 10/36 (27.78%), Postives = 20/36 (55.56%), Query Frame = 0 Query: 26 IHFEYGSAEKPACSGRGDKGSWLLNGLVRFYEWTQT 61 I S+++ ++ WLL+GL++F+ W +T Sbjct: 781 IQISNSSSQRKQLKSCSEQLPWLLSGLLKFWSWFET 888
BLAST of EMLSAG00000003648 vs. L. salmonis peptides
Match: EMLSAP00000003648 (pep:novel supercontig:LSalAtl2s:LSalAtl2s199:123768:144571:-1 gene:EMLSAG00000003648 transcript:EMLSAT00000003648 description:"snap_masked-LSalAtl2s199-processed-gene-1.3") HSP 1 Score: 236.498 bits (602), Expect = 2.914e-81 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 Query: 1 MRKEALEDNVRETGTRRKNGKYIYDIHFEYGSAEKPACSGRGDKGSWLLNGLVRFYEWTQTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQTRCLF 113 MRKEALEDNVRETGTRRKNGKYIYDIHFEYGSAEKPACSGRGDKGSWLLNGLVRFYEWTQTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQTRCLF Sbjct: 1 MRKEALEDNVRETGTRRKNGKYIYDIHFEYGSAEKPACSGRGDKGSWLLNGLVRFYEWTQTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQTRCLF 113
BLAST of EMLSAG00000003648 vs. L. salmonis peptides
Match: EMLSAP00000000442 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1068:97826:99509:1 gene:EMLSAG00000000442 transcript:EMLSAT00000000442 description:"augustus_masked-LSalAtl2s1068-processed-gene-1.2") HSP 1 Score: 67.0106 bits (162), Expect = 6.202e-15 Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQT 109 SFKLDRI PHS NT TL + PKKF Y F +V+ RVSDE DDIIQT Sbjct: 86 HASFKLDRIPPHSNNTHTLVVRPKKFGYFXFXXAEVQXRVSDEADDIIQT 135
BLAST of EMLSAG00000003648 vs. nr
Match: gi|225708928|gb|ACO10310.1| (Translocon-associated protein subunit beta precursor [Caligus rogercresseyi]) HSP 1 Score: 75.0998 bits (183), Expect = 2.031e-14 Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQT 109 QTSFKLDRI PHS NT TL + PKKF Y SFTS +VKYRVS+E DDI+Q Sbjct: 87 QTSFKLDRIPPHSNNTHTLVVRPKKFGYFSFTSAEVKYRVSEEADDIVQV 136
BLAST of EMLSAG00000003648 vs. nr
Match: gi|225712622|gb|ACO12157.1| (Translocon-associated protein subunit beta precursor [Lepeophtheirus salmonis] >gi|225714650|gb|ACO13171.1| Translocon-associated protein subunit beta precursor [Lepeophtheirus salmonis]) HSP 1 Score: 74.7146 bits (182), Expect = 2.171e-14 Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQT 109 SFKLDRI PHS NT TL + PKKF Y +FTS +VKYRVSDE DDIIQT Sbjct: 86 HASFKLDRIPPHSNNTHTLVVRPKKFGYFNFTSAEVKYRVSDEADDIIQT 135
BLAST of EMLSAG00000003648 vs. nr
Match: gi|225712054|gb|ACO11873.1| (Translocon-associated protein subunit beta precursor [Lepeophtheirus salmonis]) HSP 1 Score: 74.7146 bits (182), Expect = 2.414e-14 Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQT 109 SFKLDRI PHS NT TL + PKKF Y +FTS +VKYRVSDE DDIIQT Sbjct: 86 HASFKLDRIPPHSNNTHTLVVRPKKFGYFNFTSAEVKYRVSDEADDIIQT 135
BLAST of EMLSAG00000003648 vs. nr
Match: gi|290562754|gb|ADD38772.1| (Translocon-associated protein subunit beta [Lepeophtheirus salmonis]) HSP 1 Score: 73.559 bits (179), Expect = 6.763e-14 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQT 109 SFKLDRI PHS NT TL + PKKF Y +FTS +V+YRVSDE DDIIQT Sbjct: 86 HASFKLDRIPPHSNNTHTLVVRPKKFGYFNFTSAEVQYRVSDEADDIIQT 135
BLAST of EMLSAG00000003648 vs. nr
Match: gi|225710348|gb|ACO11020.1| (Translocon-associated protein subunit beta precursor [Caligus rogercresseyi]) HSP 1 Score: 72.0182 bits (175), Expect = 2.331e-13 Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQT 109 QTSFKLDRI PHS NT L + PKKF Y +FTS +VKYRVS+E DDI+Q Sbjct: 87 QTSFKLDRIPPHSNNTHALVVRPKKFGYFNFTSAEVKYRVSEEADDIVQV 136
BLAST of EMLSAG00000003648 vs. nr
Match: gi|225719752|gb|ACO15722.1| (Translocon-associated protein subunit beta precursor [Caligus clemensi]) HSP 1 Score: 68.1662 bits (165), Expect = 7.015e-12 Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 0 Query: 60 QTSFKLDRILPHSENTLTLFLSPKKFEYLSFTSFKVKYRVSDEVDDIIQ 108 SFKLDR+ PHS NT TL + PKKF Y +FTS ++KYRVS+E DD++Q Sbjct: 87 HASFKLDRVPPHSNNTHTLVVRPKKFGYFNFTSAEIKYRVSEEADDVVQ 135 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003648 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003648 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000003648 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003648 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003648 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003648 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 6
BLAST of EMLSAG00000003648 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s199:123768..144571- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003648-686414 ID=EMLSAG00000003648-686414|Name=EMLSAG00000003648|organism=Lepeophtheirus salmonis|type=gene|length=20804bp|location=Sequence derived from alignment at LSalAtl2s199:123768..144571- (Lepeophtheirus salmonis)back to top Add to Basket
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