EMLSAG00000003854, EMLSAG00000003854-686620 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003854
Unique NameEMLSAG00000003854-686620
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003854 vs. C. finmarchicus
Match: gi|592873976|gb|GAXK01083586.1| (TSA: Calanus finmarchicus comp176830_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 58.9214 bits (141), Expect = 2.510e-9
Identity = 62/152 (40.79%), Postives = 81/152 (53.29%), Query Frame = 0 
Query:   45 DLLTTPKV--------EPNALGGGLLSPRCNNNSR----------------HGEDMLTTPVLTTPKTAEY--WSTLGKDIXXXXXXXXXXXXXXXXXXXMDSDIGLRSPCDGLLHKRRMFKN-KIXXXXXXXXXXXXCDTPGSD-NSPRDLS 168
            D+LTTPK         E N + GGL++ R   + R                HGE +L+TP LTTP+TA++  +S +      S     S     P +LP+DS IGL SP DG+L KRR  KN   +   S+ SDSNSCDTP +D + PRDLS
Sbjct: 1964 DILTTPKESLKTPKFREFNEMTGGLIALRSPRDFRDFDSLNTPLPLTTPVPHGEGLLSTPTLTTPRTADWGLFSPMNLGSNCSSPRESSQRDNRPADLPLDSTIGLSSPHDGVLAKRRKLKNLNSSHSRSIESDSNSCDTPTTDIDFPRDLS 2419
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BLAST of EMLSAG00000003854 vs. L. salmonis peptides
Match: EMLSAP00000003854 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2096:20986:22223:1 gene:EMLSAG00000003854 transcript:EMLSAT00000003854 description:"augustus_masked-LSalAtl2s2096-processed-gene-0.0")

HSP 1 Score: 442.965 bits (1138), Expect = 4.114e-159
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 
Query:    1 MIVSVTTAKMTGLDLGPPPSSTNSNSGSTTSSSSSNNNNSSRQEDLLTTPKVEPNALGGGLLSPRCNNNSRHGEDMLTTPVLTTPKTAEYWSTLGKDIPFSPTSLVSVPPPPPRELPMDSDIGLRSPCDGLLHKRRMFKNKINSGNSVNSDSNSCDTPGSDNSPRDLSVSSGVKEELMDKDEDSSNGASSNGGGGVGSVPTHLRRQISKPEGLNKNVSKVSAFA 224
            MIVSVTTAKMTGLDLGPPPSSTNSNSGSTTSSSSSNNNNSSRQEDLLTTPKVEPNALGGGLLSPRCNNNSRHGEDMLTTPVLTTPKTAEYWSTLGKDIPFSPTSLVSVPPPPPRELPMDSDIGLRSPCDGLLHKRRMFKNKINSGNSVNSDSNSCDTPGSDNSPRDLSVSSGVKEELMDKDEDSSNGASSNGGGGVGSVPTHLRRQISKPEGLNKNVSKVSAFA
Sbjct:    1 MIVSVTTAKMTGLDLGPPPSSTNSNSGSTTSSSSSNNNNSSRQEDLLTTPKVEPNALGGGLLSPRCNNNSRHGEDMLTTPVLTTPKTAEYWSTLGKDIPFSPTSLVSVPPPPPRELPMDSDIGLRSPCDGLLHKRRMFKNKINSGNSVNSDSNSCDTPGSDNSPRDLSVSSGVKEELMDKDEDSSNGASSNGGGGVGSVPTHLRRQISKPEGLNKNVSKVSAFA 224
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BLAST of EMLSAG00000003854 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold44_size478958-snap-gene-3.27 (protein:Tk06934 transcript:maker-scaffold44_size478958-snap-gene-3.27-mRNA-1 annotation:"maltase partial")

HSP 1 Score: 114.39 bits (285), Expect = 1.977e-29
Identity = 95/208 (45.67%), Postives = 113/208 (54.33%), Query Frame = 0 
Query:    6 TTAKMTGLDLGPPPSSTNSNSGSTTSSSSSNNNNSSRQEDLLTTPKVEPNALGGGLLSPRC-------------------NNNSRHG--------------EDMLTTPVLTTPKTAEYWSTLGKDIPF----------SPTSLVSVPPPPPRELPMDSDIGLRSPCDGLLHKRRMFKNKINS-GNSVNSDSNSCDTPGSDNSPRDLSV 169
             + +MTGLDLGP    T S   S TS      +  +  +++LTTPK+ P++  GGLLSPR                     N+SR                ED LTTPVLTTPKT++ W    +D             SPT L   P  PP++LPMDS+IGLRSPCDGLL KRR FK K  +  NSVNSDSNSCDTP S NSPRDLSV
Sbjct:   12 VSHRMTGLDLGP----TYSQQSSRTSPPVKIKSFLNSSDEMLTTPKLLPDS-AGGLLSPRGFPAKFQSPSAFIDGGKGSGANSSRFASSYGMNGMLGGGKQEDSLTTPVLTTPKTSDLWPQSARDAMCMDGFSAENLASPTPLELGPREPPKDLPMDSEIGLRSPCDGLLAKRRKFKLKQAASSNSVNSDSNSCDTPTSQNSPRDLSV 214
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003854 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003854 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592873976|gb|GAXK01083586.1|2.510e-940.79TSA: Calanus finmarchicus comp176830_c1_seq1 trans... [more]
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BLAST of EMLSAG00000003854 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000038544.114e-159100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2096:2098... [more]
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BLAST of EMLSAG00000003854 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003854 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003854 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003854 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold44_size478958-snap-gene-3.271.977e-2945.67protein:Tk06934 transcript:maker-scaffold44_size47... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2096supercontigLSalAtl2s2096:20986..22223 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s2096-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003854 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003854EMLSAT00000003854-699701Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2096:20986..22223+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003854-686620 ID=EMLSAG00000003854-686620|Name=EMLSAG00000003854|organism=Lepeophtheirus salmonis|type=gene|length=1238bp|location=Sequence derived from alignment at LSalAtl2s2096:20986..22223+ (Lepeophtheirus salmonis)
TATGCCTCTAGGCCTTAGGCTTTCTAAATATTAATATTTTTATTTCTCTG
TCTCAATTCCCCCCGTTCTCTCTTTCTCCTTGTCTTTAAATCTATTTACT
TATAACATGTCAGTCAGTACGCTTTTATTCGAGTCGAGTTAAGAGTCGTC
TAAAGCAAGCAAGCAAAGAAACAAGCAGTCGCATTACATTTTCGCTTCCT
TCTCTACATTTATAACTTCTTCTTCTTCTTCTGTTGTTGTTGTTGTTGTT
GTTGTAATTCTTTGCTAAAAATATAATAATATTTCAAGCAGTCATTGTTG
ATTCATCAAAGGTGAAGGGACCCCCGTAATGAAAGTGTGTTATTGAGCTG
TATATTCCTCTACCATTAAGTTAATATTTTATCTGTGTGTGTTAACTATA
TAATTAAGAATAACTTATTCTGTGTATTAATTGCCTATTAATTTGTATCT
TGCAGTTATTTGAGAATGATTGTCAAAAATCCTTGGAATCAATTAGTACT
TCTAGCACATCCAATCCTACAATTACAACGTCAGTGAAGAACTCTAATTC
TAATTACATCTCTTCAATGATTGTGTCTGTAACAACTGCGAAAATGACTG
GATTAGACTTAGGACCTCCTCCTTCGTCTACAAATTCTAACTCCGGCTCT
ACAACCTCCTCCTCTTCTTCTAATAATAATAATAGTTCAAGACAAGAAGA
CTTGTTGACAACCCCAAAAGTTGAGCCGAATGCACTTGGAGGTGGGCTGC
TCTCCCCTCGTTGTAACAATAATAGTCGTCATGGTGAGGATATGTTGACA
ACACCGGTTTTAACTACCCCTAAAACCGCAGAGTATTGGTCAACACTCGG
GAAAGACATTCCCTTCTCACCCACTTCCCTAGTCTCAGTTCCACCGCCAC
CTCCTCGAGAGCTACCCATGGACTCAGACATTGGACTTCGCTCACCTTGT
GACGGTCTTCTTCACAAAAGAAGAATGTTTAAAAATAAAATCAATTCGGG
GAATAGTGTTAATTCAGACTCTAATTCCTGTGATACCCCTGGCTCAGATA
ATAGTCCGAGAGATTTAAGTGTTTCGTCTGGAGTCAAAGAGGAATTGATG
GATAAGGATGAGGACTCGAGTAATGGAGCATCATCCAATGGGGGCGGGGG
AGTTGGGAGTGTTCCAACTCATCTTCGTCGTCAGATCTCAAAACCCGAAG
GGTTAAATAAAAATGTTAGCAAGGTTTCAGCATTCGCC
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