EMLSAG00000003874, EMLSAG00000003874-686640 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003874
Unique NameEMLSAG00000003874-686640
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003874 vs. L. salmonis peptides
Match: EMLSAP00000003874 (pep:novel supercontig:LSalAtl2s:LSalAtl2s21044:24:553:-1 gene:EMLSAG00000003874 transcript:EMLSAT00000003874 description:"maker-LSalAtl2s21044-augustus-gene-0.0")

HSP 1 Score: 297.36 bits (760), Expect = 3.052e-104
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 
Query:    1 FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEKINNEDVKPFISPLLTYVYFEYLFYKKIIRNQFCK 146
            FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEKINNEDVKPFISPLLTYVYFEYLFYKKIIRNQFCK
Sbjct:    1 FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEKINNEDVKPFISPLLTYVYFEYLFYKKIIRNQFCK 146
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BLAST of EMLSAG00000003874 vs. L. salmonis peptides
Match: EMLSAP00000010149 (pep:novel supercontig:LSalAtl2s:LSalAtl2s670:196644:276285:-1 gene:EMLSAG00000010149 transcript:EMLSAT00000010149 description:"maker-LSalAtl2s670-augustus-gene-2.11")

HSP 1 Score: 244.973 bits (624), Expect = 2.979e-77
Identity = 123/144 (85.42%), Postives = 130/144 (90.28%), Query Frame = 0 
Query:    1 FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEKINNEDVKPFISPLLTYVYFEYLFYKKIIRNQF 144
            FSVEKSVKELKENGKEV ELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGY+ ERSLLELNSEY S+T+TSKQVKAFFSFFETEK+NNEDVKPFISPLLT  Y + +    +I   F
Sbjct:  136 FSVEKSVKELKENGKEVNELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYSNERSLLELNSEYDSNTITSKQVKAFFSFFETEKLNNEDVKPFISPLLTTGYNKNVHIPHVILYHF 279

HSP 2 Score: 237.269 bits (604), Expect = 2.880e-74
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0 
Query:    1 FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDISNGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEKINNEDVKPFISPLLT 127
            FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDIS GATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNS Y SDT+TSKQVKAF SFFET+K+NN+D+KPF SP LT
Sbjct:  353 FSVEKSVKELKENGKEVTELEVTTWFVKFQDGNNDISXGATTPSSPDSTTLTTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSVYSSDTITSKQVKAFISFFETKKLNNDDIKPFKSPFLT 479

HSP 3 Score: 135.576 bits (340), Expect = 2.104e-37
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0 
Query:   56 LGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEKINNEDVKPFISPLLT 127
            L TGYNKNVHIPHVILYHFEKGY+ ERSLLELNSEY S+T+TSKQVKAFFSFFETEK+NNEDVKPFISPLLT
Sbjct:  261 LTTGYNKNVHIPHVILYHFEKGYSNERSLLELNSEYDSNTITSKQVKAFFSFFETEKLNNEDVKPFISPLLT 332

HSP 4 Score: 100.908 bits (250), Expect = 3.481e-25
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 0 
Query:   52 TTRALGTGYNKNVHIPHVILYHFEKGYTYERSLLELNSEYGSDTVTSKQVKAFFSFFETEK--INNEDVKPFISPLLT 127
            TTR LGT Y+K +HIPHVILYHFE GY  +RS +EL ++YG D +T+KQ+KA+FSFF++ K  +++EDVKPF SP  T
Sbjct:   38 TTRVLGTNYDKEIHIPHVILYHFETGYCTKRSFIELITQYGMDIITTKQIKAWFSFFKSGKLTLDDEDVKPFKSPYST 115
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003874 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003874 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003874 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000038743.052e-104100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s21044:24:... [more]
EMLSAP000000101492.979e-7785.42pep:novel supercontig:LSalAtl2s:LSalAtl2s670:19664... [more]
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BLAST of EMLSAG00000003874 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003874 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003874 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003874 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s21044supercontigLSalAtl2s21044:24..553 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s21044-augustus-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003874 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003874EMLSAT00000003874-699721Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s21044:24..553-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003874-686640 ID=EMLSAG00000003874-686640|Name=EMLSAG00000003874|organism=Lepeophtheirus salmonis|type=gene|length=530bp|location=Sequence derived from alignment at LSalAtl2s21044:24..553- (Lepeophtheirus salmonis)
TTTAGTGTAGAAAAGTCTGTTAAAGAGCTAAAAGAAAATGGTAAAGAAGT
TACTGAATTAGAAGTTACGACATGGTTTGTCAAGTTCCAAGATGGCAATA
ATGAYATTTCAAATGGTGCAACAACACCCTCTTCACCAGATTCAACAACC
TTAACAACAAGAGCACTCGGGTATGTAATTTTTGAAATTAAAACTAGGAA
TTAACTAAAAAATATTCAAATTGAATATATATTTATACCAATCATTCCCT
CCTTTCTAGAACTGGATATAATAAAAATGTACATATTCCTCATGTGATAT
TGTACCATTTTGAAAAAGGCTATACCTATGAGCGTTCTTTGTTAGAACTC
AATTCAGAATATGGCTCAGACACGGTCACAAGCAAACAAGTAAAAGCGTT
CTTCTCTTTCTTTGAAACAGAGAAGATAAACAATGAGGATGTTAAACCTT
TTATATCACCTTTATTGACGTATGTATATTTTGAATACCTTTTTTATAAA
AAAATAATTCGTAATCAGTTTTGCAAATGA
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