EMLSAG00000003900, EMLSAG00000003900-686666 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592763620|gb|GAXK01190948.1| (TSA: Calanus finmarchicus comp334512_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 2.484e-4 Identity = 33/132 (25.00%), Postives = 53/132 (40.15%), Query Frame = 0 Query: 111 YDEEASYDTSGPSEDT----LPPDRNKDYELQHNDEWISVCE-EIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRM 237 Y EE+ Y+ G E+ + + E+ + + SV E E +NYF+S S + G ++ C LC K N R H+ H+F + C +C+++ K K S A M Sbjct: 340 YQEESGYEDYGQYEEEQQYEVASFQGVGGEVDKSGKRSSVMEDEFENYFKSNSTLIEGGAWSCFLCGKIAAHIGNMRQHFEAHHFSLGAIQ-----------------------CEVCQKIFKTKHSLATHM 666
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592902303|gb|GAXK01056072.1| (TSA: Calanus finmarchicus comp2297921_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 7.592e-4 Identity = 26/87 (29.89%), Postives = 35/87 (40.23%), Query Frame = 0 Query: 148 EEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTA 234 E+ + S S +L G +QC +C K N R H+VTH+FQT +V C+ C R K K S A Sbjct: 84 EDFYQFMRSNSEKLAGGRWQCNICLKITAHGGNMRQHFVTHHFQT----------------------EVDCPCLFCGRNFKNKNSLA 278
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592916003|gb|GAXK01042372.1| (TSA: Calanus finmarchicus comp299100_c0_seq2 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 2.107e-2 Identity = 36/149 (24.16%), Postives = 56/149 (37.58%), Query Frame = 0 Query: 95 YIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 Y+E+ D+ YDE+A +G Y+ Q D E+ Y ++ G Y C LC K + NA++H VE + + V+ +C IC ++ K K S L+ HF +KH Sbjct: 123 YVEEEYDYGQ------YDEQAGGMMAG-------------YQGQGMDTSQGT-EDTSGYLSTVISEDGIKMYSCQLCGKAFKKSQNAKTH---------------------VES--VHVAGVQVNCGICAKIFKNKES--LKTHFRIKH 434
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592909245|gb|GAXK01049130.1| (TSA: Calanus finmarchicus comp5720618_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 4.109e-2 Identity = 24/83 (28.92%), Postives = 39/83 (46.99%), Query Frame = 0 Query: 163 GASYQCLLCAKNLRDRFNARSHY-------VTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMH 238 G ++QC LC K+ +R N R H +T +F T + ++ D +R+I K K C IC+R + + R+H Sbjct: 205 GLAFQCELCDKHFVNRHNLREHTKGFHNENLTTFFCTICEETLSSKYKDYKKRHIQTHTKKKEICPICKREVTVLKPHIKRLH 453
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592910360|gb|GAXK01048015.1| (TSA: Calanus finmarchicus comp1255462_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 1.051e-1 Identity = 28/121 (23.14%), Postives = 55/121 (45.45%), Query Frame = 0 Query: 92 EVKYIEDHKDFESESGELYY-DEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRF-DDLVERNI 210 E K + +H++F SE+ + D + DT+ P + +RN+ + + S ++ + S G YQC++C + + N + H +TH K K F ++ +E++I Sbjct: 1400 EDKNVSNHQNFPSENLDAATRDTSITDDTTNPKGSSSSTNRNRKIFCTYCHKGFSKNFDLAQHVRS---HTGEKPYQCVICGRGFAQKSNVKKHMITHKVWPKGHKTLPKGFLEEKIEQDI 1753
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787912|gb|GAXK01166656.1| (TSA: Calanus finmarchicus comp1193_c26_seq30 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 1.194e-1 Identity = 33/130 (25.38%), Postives = 52/130 (40.00%), Query Frame = 0 Query: 114 EASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 +ASYD S + D NKD + Q V E+ + Y ++QCLLC ++ +D+ + H TH+ A + C C+ +LK + S L+MH I +H Sbjct: 852 DASYDGSMMAGAGTA-DGNKDLDEQIGKNMDKVLEDGRTY-----------AWQCLLCGRSNKDKSIVKHHVETHFPGYAQQ------------------------CPHCQNILKTRKS--LKMHIIREH 1127
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787914|gb|GAXK01166654.1| (TSA: Calanus finmarchicus comp1193_c26_seq28 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 1.204e-1 Identity = 33/130 (25.38%), Postives = 52/130 (40.00%), Query Frame = 0 Query: 114 EASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 +ASYD S + D NKD + Q V E+ + Y ++QCLLC ++ +D+ + H TH+ A + C C+ +LK + S L+MH I +H Sbjct: 852 DASYDGSMMAGAGTA-DGNKDLDEQIGKNMDKVLEDGRTY-----------AWQCLLCGRSNKDKSIVKHHVETHFPGYAQQ------------------------CPHCQNILKTRKS--LKMHIIREH 1127
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787917|gb|GAXK01166651.1| (TSA: Calanus finmarchicus comp1193_c26_seq25 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 1.395e-1 Identity = 33/130 (25.38%), Postives = 52/130 (40.00%), Query Frame = 0 Query: 114 EASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 +ASYD S + D NKD + Q V E+ + Y ++QCLLC ++ +D+ + H TH+ A + C C+ +LK + S L+MH I +H Sbjct: 999 DASYDGSMMAGAGTA-DGNKDLDEQIGKNMDKVLEDGRTY-----------AWQCLLCGRSNKDKSIVKHHVETHFPGYAQQ------------------------CPHCQNILKTRKS--LKMHIIREH 1274
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787919|gb|GAXK01166649.1| (TSA: Calanus finmarchicus comp1193_c26_seq23 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 1.404e-1 Identity = 33/130 (25.38%), Postives = 52/130 (40.00%), Query Frame = 0 Query: 114 EASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 +ASYD S + D NKD + Q V E+ + Y ++QCLLC ++ +D+ + H TH+ A + C C+ +LK + S L+MH I +H Sbjct: 999 DASYDGSMMAGAGTA-DGNKDLDEQIGKNMDKVLEDGRTY-----------AWQCLLCGRSNKDKSIVKHHVETHFPGYAQQ------------------------CPHCQNILKTRKS--LKMHIIREH 1274
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787918|gb|GAXK01166650.1| (TSA: Calanus finmarchicus comp1193_c26_seq24 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.478e-1 Identity = 33/130 (25.38%), Postives = 52/130 (40.00%), Query Frame = 0 Query: 114 EASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 +ASYD S + D NKD + Q V E+ + Y ++QCLLC ++ +D+ + H TH+ A + C C+ +LK + S L+MH I +H Sbjct: 1039 DASYDGSMMAGAGTA-DGNKDLDEQIGKNMDKVLEDGRTY-----------AWQCLLCGRSNKDKSIVKHHVETHFPGYAQQ------------------------CPHCQNILKTRKS--LKMHIIREH 1314
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000003900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:650772:653232:-1 gene:EMLSAG00000003900 transcript:EMLSAT00000003900 description:"maker-LSalAtl2s210-augustus-gene-5.20") HSP 1 Score: 511.531 bits (1316), Expect = 0.000e+0 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 Query: 1 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF 247 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF Sbjct: 1 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF 247
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000003901 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:674069:678772:-1 gene:EMLSAG00000003901 transcript:EMLSAT00000003901 description:"maker-LSalAtl2s210-snap-gene-5.24") HSP 1 Score: 112.079 bits (279), Expect = 3.364e-30 Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 0 Query: 2 STSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNK 133 S +G S YS SSLVISKET+ P + PPQ++Q I IG+DDDEIEDVT +KEE KY+ ++DE+ +NQS+ELEN+LH+VKYIEDH DFESES EE DT SE+T PD NK Sbjct: 48 SITGLCISAYSLKTHSSLVISKETSPNPSKF-------PPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESES------EELCCDTLRDSENTSHPDLNK 166
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000000188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:128672:130553:-1 gene:EMLSAG00000000188 transcript:EMLSAT00000000188 description:"maker-LSalAtl2s1029-augustus-gene-1.38") HSP 1 Score: 70.8626 bits (172), Expect = 3.744e-15 Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 0 Query: 45 QPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEAS---YDTS---GPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSH 184 QP TI +DDEI+D+TP+ E+ KY++ S +P+ + +E+++ LH+ ++IED ++ES SG+ YDEE S +D S GPS ++P D NK+ + N E + R YQC+ C K + N + H Sbjct: 36 QP-TITIEDDEIQDITPITEDKKYVVNNS--MTIPD-KPQEVDDSLHKEEFIEDQNEYESASGDFCYDEEESITDHDLSGAPGPSGTSIPLDENKELNEKLNAE-----------INRLIKRTPDGVYQCISCKKTTKRLQNLQFH 166
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000006061 (pep:novel supercontig:LSalAtl2s:LSalAtl2s328:254086:278509:-1 gene:EMLSAG00000006061 transcript:EMLSAT00000006061 description:"maker-LSalAtl2s328-augustus-gene-2.18") HSP 1 Score: 54.299 bits (129), Expect = 5.859e-9 Identity = 53/206 (25.73%), Postives = 80/206 (38.83%), Query Frame = 0 Query: 51 DDDDEIEDVTPLKEEAKYIIGRS-----DDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASY------DTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCN 245 +DDDEIED+TP+K E K G + D + P++ ++ HE + E++ + SESGE+ Y+E S GPS D NK + + + +R + + C C K R R+H + QT D + C +C RV K + S L +H KH N Sbjct: 53 EDDDEIEDITPVKAEPKDTTGNTMVVTPDVSLGPDDLGDDAYT--HEDENYEEYAQYGSESGEMSYNEGGSLMDPGLAXVPGPSGAPTAADGNKG---------AGAIIALDSAINRLIIR-SASGFTCKKCGKQSAQRTCLRNHIEAKHIQT----DGFR-------------------CPVCTRVFKTRNS--LXVHTSTKHTN 221 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003900 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000003900 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003900 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003900 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003900 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s210:650772..653232- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003900-686666 ID=EMLSAG00000003900-686666|Name=EMLSAG00000003900|organism=Lepeophtheirus salmonis|type=gene|length=2461bp|location=Sequence derived from alignment at LSalAtl2s210:650772..653232- (Lepeophtheirus salmonis)back to top Add to Basket
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