EMLSAG00000003901, EMLSAG00000003901-686667 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000003901
Unique Name	EMLSAG00000003901-686667
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of EMLSAG00000003901 vs. L. salmonis peptides
Match: EMLSAP00000003901 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:674069:678772:-1 gene:EMLSAG00000003901 transcript:EMLSAT00000003901 description:"maker-LSalAtl2s210-snap-gene-5.24")

HSP 1 Score: 337.421 bits (864), Expect = 1.960e-119
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query:    1 MVGVFTSKILDVHFKVTNFPLQPGHFDIMERTKRLLTHNNGLAIIQPSITGLCISAYSLKTHSSLVISKETSPNPSKFPPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESESEELCCDTLRDSENTSHPDLNK 166
            MVGVFTSKILDVHFKVTNFPLQPGHFDIMERTKRLLTHNNGLAIIQPSITGLCISAYSLKTHSSLVISKETSPNPSKFPPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESESEELCCDTLRDSENTSHPDLNK
Sbjct:    1 MVGVFTSKILDVHFKVTNFPLQPGHFDIMERTKRLLTHNNGLAIIQPSITGLCISAYSLKTHSSLVISKETSPNPSKFPPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESESEELCCDTLRDSENTSHPDLNK 166

[Close]

BLAST of EMLSAG00000003901 vs. L. salmonis peptides
Match: EMLSAP00000003900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:650772:653232:-1 gene:EMLSAG00000003900 transcript:EMLSAT00000003900 description:"maker-LSalAtl2s210-augustus-gene-5.20")

HSP 1 Score: 78.1814 bits (191), Expect = 3.425e-18
Identity = 70/132 (53.03%), Postives = 84/132 (63.64%), Query Frame = 0

Query:   48 SITGLCISAYSLKTHSSLVISKETSPNPSKFP-PQKE------QDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESES------EELCCDTLRDSENTSHPDLNK 166
            S +G   S YS    SSLVISKET+  P  +  P K       Q I IG+DDDEIEDVT +KEE KY+   ++DE+  +NQS+ELEN+LH+VKYIEDH DFESES      EE   DT   SE+T  PD NK
Sbjct:    2 STSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNK 133

[Close]

BLAST of EMLSAG00000003901 vs. L. salmonis peptides
Match: EMLSAP00000000188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:128672:130553:-1 gene:EMLSAG00000000188 transcript:EMLSAT00000000188 description:"maker-LSalAtl2s1029-augustus-gene-1.38")

HSP 1 Score: 45.8246 bits (107), Expect = 8.706e-7
Identity = 32/92 (34.78%), Postives = 54/92 (58.70%), Query Frame = 0

Query:   60 KTHSSLVISKETSPNPSKFPPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESESEELCCD 151
            + +SS VISKE++           Q   I  +DDEI+D+T + E+ KYV    N+ + + ++ QE+++ LH  ++IED  ++ES S + C D
Sbjct:   12 RENSSPVISKESTCQTHVSSKHYSQPT-ITIEDDEIQDITPITEDKKYVV---NNSMTIPDKPQEVDDSLHKEEFIEDQNEYESASGDFCYD 99

The following BLAST results are available for this feature:

BLAST of EMLSAG00000003901 vs. GO
BLAST of EMLSAG00000003901 vs. C. finmarchicus
BLAST of EMLSAG00000003901 vs. L. salmonis peptides
BLAST of EMLSAG00000003901 vs. SwissProt
BLAST of EMLSAG00000003901 vs. Select Arthropod Genomes
BLAST of EMLSAG00000003901 vs. nr
BLAST of EMLSAG00000003901 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000003901 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000003901 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000003901 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3


Match Name	E-value	Identity	Description
EMLSAP00000003901	1.960e-119	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s210:67406...	[more]
EMLSAP00000003900	3.425e-18	53.03	pep:novel supercontig:LSalAtl2s:LSalAtl2s210:65077...	[more]
EMLSAP00000000188	8.706e-7	34.78	pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:1286...	[more]

BLAST of EMLSAG00000003901 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000003901 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000003901 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000003901 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s210	supercontig	LSalAtl2s210:674069..678772 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	maker-LSalAtl2s210-snap-gene-5.24
Biotype	protein_coding
Evidence	IEA
Note	Hypothetical protein

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000003901 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000003901	EMLSAT00000003901-699748	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s210:674069..678772-

gene from alignment at LSalAtl2s210:674069..678772-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000003901-686667 ID=EMLSAG00000003901-686667|Name=EMLSAG00000003901|organism=Lepeophtheirus salmonis|type=gene|length=4704bp|location=Sequence derived from alignment at LSalAtl2s210:674069..678772- (Lepeophtheirus salmonis)
ATGGTGGGCGTGTTTACTTCTAAGATCCTTGATGTCCACTTCAAGGTTAC
GAACTTTCCTCTTCAGCCAGGCCACTTTGATATCATGGAAAGAACAAAAC
GCCTTCTTACACACAACAACGGTCTTGCTATTATACGTAACTTTGTAGAG
GTAACTCTTACGATCGCTCTCATTATCTTTGTTCACTCTGCATCACATAT
CATCCTCATCTTTGACAGTGATGCAGCCCCGCAGATAAATATTCTGCTTT
ACATGATCCGCAAGTTTATTGAAGCGACCGAATATTTAGAAAATTTTAAA
CGAAAAACAATTCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGYGGKAACKSCCCCRCAAGWCRSCCCCCRSCAGAKARC
CKKYAAWATTRKCTTTTTWCGTTTTGCATTACCTTCAACTCGCAACTTGA
AAAGCAACCAATATTTAACTTATTTTAACATATAAAAAGTGAGCTGTAAA
AATAGACCTGAAACCCCAAATTCAAGTTGTAACATCTTTATTATTTTTAT
TATAAGTCGTGAAACACACAAAGGATCTTTAAAACCTTAAAACAGATCCA
GGTTTGGTCCTTAGCCATATAAAAAAAATCAAATATTTTAGGATATTTTT
ACGATTCAAAGCCATATTCTACTATAAAAAGAGAATATATAGACGGAAAT
CAGAGTTATTTACTAAGGATCAATAACATTACAGCATTTCAAAGATGTAT
AATAATATATAATAATATTCAAATATAGATTTAAATCTTTTGGAAGCACA
GATCTCACGTAAGGATAAATTAAAAACTCGGGAGCCCTGAAAATACATTT
CTGAATTTTTTTGGTCTGGCTCTCTATGAAAGACTCCGTAAGGGGGTGAT
AATGATATATTAAAAAATCATAAGAATGATCCCTTACAACAGTGGTTTCC
AATATAAAGGCTGTCAAGTCTAATACATTTGACATTAAAAAACAATTTCT
TATGTTTGATGAAGTAAATTGACATCATATCTCCAAGAACAACTAATCTT
AGTCTATTGATGTAATCAACACTAGTTGGATGCTCGTTGAATACCCCAAG
ACGCGAGAAAAAGTTCTTCAGGGGCTTATGAACTTTCAAACAGTTTGTTT
GGGAGTAGTGAGAACTTCATTGACAATTTGTTTTGTGTTCCTGGAGGAGA
GCCTAAAATAAATATAAGGAGGACCATGAATATGTCTAAAATAGATCTGC
TTAATTTCTTTTTATATATTATAGAATTCATGGTTTTTGTTTACTTTTTA
TTTCAACATCTTTTCTCCTCTTTCCTCTTTAGCAAGCTAACTAGCTCGCA
AAGTGTCTCTATACATAGGGCCTCTAAGAAATTCTGCGCTTGCAATTTTT
TGTCATTAAGAAAAGAAGAAGGTAGGTTTAATTACGTCACTGTTGAGGCA
CATAGCACTATATCCTATATAATTGTAAAGTAATAATTTAAAAAATGACT
TATAGTACACAACGGTAAACTGAAGACAATGGCAAAAAGTATGAAAAACA
AAAAAAAATTAATTTGTATTGATATTAATATCTACAAAAGTAAATCCTTT
CCAATACTTATTTCCATTGTTATGAAAATTTACGATATCCTTGCTTGATA
CTTTATAGAATAATAGAATCAATTTCAGAACTAATTATTTAAAAAGACTA
ACATTAATTTGCAAATATATTAATAATGATTATGAACTATCGGTATTTCA
GCTTATAGTAATATGTTTTATATATATTATCTAATTTACCATTTTATTAC
AAAATATAAGAGTGGTGAATTAAGGAATCGCAATAAGTAAAAATTACAGC
ATACATATTTTTTTACATACATACATGAATAATAAATATTAATTTGTAAA
TTGATCAATCTGCCTAAGAGTTCTCAGATTAGCACTTGCGTTCTTCAGCT
TAAACTTTTTAATAAGGTTATTTACTCTTTACCAATAAAGTCGAACCGAG
ACCGCGATATATTGCCTATCAGCCTCAAAGACTCAAAACTTAACTTGTCC
TCGAAATTTTTTTGTAAGGAAGACATTTGGTCCTAAAAGGTAGATTGATT
ATAATCAGCAGAGCCGAAAATAAGGCTATCCACCGAAATGCTACAAAACC
CGATAATTAACGTGGTACCCCTGATAATTGAAGAATATTTTTGAGACCTA
AATAAAAATCTATTATATATGGGAGTATGTTCCTTGAATTTAAGGTTAAT
ATACGTTTTTTAGTTAATGGATAATTAATTATTATTGTTTTAATAATAAG
ACACGTCCTTGCTATCATCTTTTTGTTTATAGAATCAAATAATCTAATTA
ATTATTAATTCCTCATGGCATATTGAATCATTATAGAAAATAGTAACGGA
ACTTTACCTTCTTACTTAATCACTCAACTACTCATATATTTTATTTTACT
TGTATCAAATTTTATCCATCATTCATTATTGTCTAAGGATATTATTGACG
TTTAAGCTTGTGGTTTTATGCATGGCAACTCTTTCCTTGATACGAAAGAA
GTTTTGTATTAATCTTGTATAAATGGTTTTTAAATTCTTCGTTTATGTGT
CTTGTATGTATGGGTTTTATATTAATGGTCTGGGGAACAAGGGACCAGTA
TTTTATTTCATTATACAACTATTCATAATATACAAGTTGTAACTTGTATA
AGTATGCTYTACAGGTTGAACTCAGTTCGTCCCTTAGTGTTTAATACAAT
TACATCAGTCACTAAGGTATATTTTCAACTAAGATATATATAATCATTAA
TCATGTATGTACTTCTGAACTTTTTAAGCGTGCCCACCAGAAATACGGCC
CGACACGGATTGTGACGTCATTGGATTTAAAATATCAATTATAGTATACT
ACTAGTATGTTGACGTTTGCAAGAATTATGGGATGTAAGGGTTTATATCG
TAGAAGACTTTTAAAGTAAATGATGATAATATAAATATTTATTATATTTT
GAAATTGTTCATCTGCTATCAAACATTTTAAATCCAATGACGTCAGATGT
CACGTGTTATTTTCAAGCACAAATCAAAAACATTTCAGAAGAACATACCT
GATTATATATTCCTTGTTTTCAATTATTATACTTTTCATTCTTATTTGTT
AAATTCTTAATCTGTTTGTAACTTGTACAATATTCTCATACGAGTTACAA
CTTTGTACAGAGTCAAAAAGCGTGCGTTCTCTAGTTCTAGGTTCCTTTTG
TAGCAAATACCACTTCTTTCCTTCATTTCTTTATTTACAAATTCCCTCAG
CTCTTGAGGATTTTAATTGGAATTATTCTTTGATAATATTGTTTTCAATA
TTTTTACTTAAGGTGTGCAGATTTGACAAATAAATTTATTGATTCTCACT
TACAGATGGGGTCAACAGAGCGTTTACACATTCGATGGAATGACTTCGAG
TCCAACATCAAATGTGGCCTATCAGAACTTCGACAGGAGAAGGAGCTCTT
CGACGTCACTTTGGCCTGTGGTTCCAAGCAGATTAAAGCCCATAAAGTAA
TACTCAGCGCCTGCTCTCCTTTTTAGATCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAATAAACGACCTCGCAACGAAGATCAAGGAATTTCTCCAGAACCCAGT
ATCACAGGACTCTGCATCTCCGCTTATTCCTTAAAAACTCACTCTTCCCT
TGTCATTTCCAAAGAAACTTCTCCGAATCCATCCAAATTCCCTCCTCAGA
AAGAGCAGGACATCCCCATTGGAGAGGACGATGATGAGATTGAAGATGTG
ACTATAGTCAAGGAAGAAGATAAATATGTTTTTGAGAGTAACAATGATGA
AGTCGGTTTGGATAATCAATCCCAAGAGTTAGAAAATGAACTACATGATG
TTAAATATATTGAGGATCATATAGATTTTGAATCTGAATCTGAAGAGCTT
TGCTGTGATACTTTGAGAGACTCTGAGAACACATCACACCCTGATCTAAA
TAAA

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