EMLSAG00000003932, EMLSAG00000003932-686698 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003932 vs. GO
Match: - (symbol:Ssk "Snakeskin" species:7227 "Drosophila melanogaster" [GO:0003674 "molecular_function" evidence=ND] [GO:0007496 "anterior midgut development" evidence=IMP] [GO:0019991 "septate junction assembly" evidence=IMP] [GO:0005920 "smooth septate junction" evidence=IDA] [GO:0005887 "integral component of plasma membrane" evidence=IDA] [GO:0061028 "establishment of endothelial barrier" evidence=IMP] [GO:0060576 "intestinal epithelial cell development" evidence=IMP] EMBL:AE014296 GO:GO:0005887 GO:GO:0005920 GO:GO:0019991 GO:GO:0060576 GO:GO:0007496 GO:GO:0061028 EMBL:AY052037 EMBL:AM294673 EMBL:AM294674 EMBL:AM294675 EMBL:AM294676 EMBL:AM294677 EMBL:AM294678 EMBL:AM294679 EMBL:AM294680 EMBL:AM294681 EMBL:AM294682 EMBL:AM294683 EMBL:AM294684 EMBL:FM245818 EMBL:FM245819 EMBL:FM245820 EMBL:FM245821 EMBL:FM245822 EMBL:FM245823 EMBL:FM245824 EMBL:FM245825 EMBL:FM245826 EMBL:FM245827 EMBL:FM245828 EMBL:FM245829 RefSeq:NP_649184.1 RefSeq:NP_730487.1 UniGene:Dm.4400 MINT:MINT-912212 STRING:7227.FBpp0074589 EnsemblMetazoa:FBtr0074820 EnsemblMetazoa:FBtr0074821 GeneID:40207 KEGG:dme:Dmel_CG6981 UCSC:CG6981-RA CTD:40207 FlyBase:FBgn0036945 eggNOG:NOG41444 InParanoid:Q9VW87 OMA:GGTWNLN OrthoDB:EOG7WQ7TT GenomeRNAi:40207 NextBio:817571 Uniprot:Q9VW87) HSP 1 Score: 46.595 bits (109), Expect = 1.018e-5 Identity = 40/156 (25.64%), Postives = 71/156 (45.51%), Query Frame = 0 Query: 5 EVLSVSGIF-KILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPDDY---TRDFGAGIALGSLCILGSIIYFCDFVFAWVTRNR 156 V +V IF K L+++I + + L+R+GD G +L G T + D E + +G +M G L+ + G + +T N + C + + G L W Y + + + + GIA+GSLC++ +Y D V A + ++ Sbjct: 3 SVETVGSIFIKALKLIINLVIIFLYRWGDGGEFLGIGGT--WNLNEEKSADAEIVASG-VMVGFLIYTGCHTIAFAFGTTKHKGELCDTIMNVVGCIMWIAVGGVALHYWKGYMSDEGFLYVNSERQVGIAMGSLCVIEGALYLLDTVLACIHYSK 155
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592759298|gb|GAXK01195115.1| (TSA: Calanus finmarchicus comp88665_c0_seq1 transcribed RNA sequence) HSP 1 Score: 124.02 bits (310), Expect = 5.995e-34 Identity = 59/163 (36.20%), Postives = 97/163 (59.51%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPD----------DYTRDFGAGIALGSLCILGSIIYFCDFVFAWVTRNRLKRE 160 SVSG K+ E++++FIT+++HR GD G YL+F TT K+ DP +D ENLGNG L+T ++++ L+ Y++DGR +IQ+ LE WN L + MG+G + W A +Y R+ + +A+G++CI+ +IY D +W R ++ ++ Sbjct: 82 SVSGWLKLSELVLIFITLIIHRHGDNGHYLYFATTGTKLGYDDPNIDAENLGNGTLVTFLIITIVLIIGYVIDGREYIQQSILEPIWNLLGAFMFMGSGSMAIITWKDEQALKTSSSTSLTEMEYHRNISSAMAMGAMCIIIGLIYLIDLGVSWYNRGKITQD 570
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592819914|gb|GAXK01134654.1| (TSA: Calanus finmarchicus comp92059_c0_seq1 transcribed RNA sequence) HSP 1 Score: 77.411 bits (189), Expect = 8.926e-16 Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 0 Query: 5 EVLSVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMA----PGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDA----PDDYTRDFG------AGIALGSLCILGSIIYFCDFVFAWVTRNRLKRE 160 E+ S SG+FK E +F+ V++HR G+ G ++FGT +M P + +D E LG G L +VS S+LASY+++GR +Q +++ + + LL+ +G N+ S A P + G AG A+G +CI+ +IY DF + R L ++ Sbjct: 1238 ELFSTSGMFKTFETFTVFVCVVIHRIGNQGSQVWFGTADFEMGYKETPSE--VDAEVLGCGILTCMCIVSLSILASYLIEGREVVQSTVIDSAFCIIAACLLLTSGGMCCFNYNSVFALSGPPTISNMNIGRSSQQVAG-AMGVMCIVSGLIYLADFFYVLCQRTALLQQ 1738
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592802545|gb|GAXK01152023.1| (TSA: Calanus finmarchicus comp927091_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 6.222e-5 Identity = 47/160 (29.38%), Postives = 77/160 (48.12%), Query Frame = 0 Query: 1 MQFEEVLSVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPDDYTRDFGAGIALGSLCILGSIIYFCDFVFAWVTR--NRLK 158 M + + S+ G+FKI E++++ IT LL R G G + FGT+ ++ G + + A++ GI++ + S+ LD + I FL CA+ T + + +RD +G+ALGS CI+ I+ D F VT+ RLK Sbjct: 57 MDLKGLFSIHGLFKIFELVLIVITFLLARIGYGGNHALFGTSVDEIWLGYLTVGGWLIITPAIIVGIVLEDPM--SWKLDSLFSIVGAFLYIASGS--CAIDYNTSLTLAKE----------SRD--SGLALGSFCIITGIVLLMDAAFL-VTKYARRLK 485
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592768702|gb|GAXK01185866.1| (TSA: Calanus finmarchicus comp44758_c1_seq6 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.192e-1 Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAP--DDYTRDFGAGIALGSLCILGSIIYFCDFVFA 150 S+ GI +ILE++++ I ++L R GD G L FG G D + +G GA + + LLA + H+ LE N + LL+ G + SY +P D RD G+ALG + I+ I++ DF+ + Sbjct: 252 SLQGILRILELVLVLIVLILARVGDGGNILHFG-----------GADADFIGIGASVGLTFI---LLAFIVCHLVGHLPPTLLEVLINLVGAILLLTAGSLAI----SYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLS 632
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592768703|gb|GAXK01185865.1| (TSA: Calanus finmarchicus comp44758_c1_seq5 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.200e-1 Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAP--DDYTRDFGAGIALGSLCILGSIIYFCDFVFA 150 S+ GI +ILE++++ I ++L R GD G L FG G D + +G GA + + LLA + H+ LE N + LL+ G + SY +P D RD G+ALG + I+ I++ DF+ + Sbjct: 252 SLQGILRILELVLVLIVLILARVGDGGNILHFG-----------GADADFIGIGASVGLTFI---LLAFIVCHLVGHLPPTLLEVLINLVGAILLLTAGSLAI----SYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLS 632
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592768704|gb|GAXK01185864.1| (TSA: Calanus finmarchicus comp44758_c1_seq4 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.744e-1 Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAP--DDYTRDFGAGIALGSLCILGSIIYFCDFVFA 150 S+ GI +ILE++++ I ++L R GD G L FG G D + +G GA + + + + +++ H+ LE N + LL+ G + SY +P D RD G+ALG + I+ I++ DF+ + Sbjct: 391 SLQGILRILELVLVLIVLILARVGDGGNILHFG-----------GADADFIGIGASVGLTFILLAFIVCHLVG---HLPPTLLEVLINLVGAILLLTAGSLAI----SYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLS 771
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592768705|gb|GAXK01185863.1| (TSA: Calanus finmarchicus comp44758_c1_seq3 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.752e-1 Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAP--DDYTRDFGAGIALGSLCILGSIIYFCDFVFA 150 S+ GI +ILE++++ I ++L R GD G L FG G D + +G GA + + + + +++ H+ LE N + LL+ G + SY +P D RD G+ALG + I+ I++ DF+ + Sbjct: 391 SLQGILRILELVLVLIVLILARVGDGGNILHFG-----------GADADFIGIGASVGLTFILLAFIVCHLVG---HLPPTLLEVLINLVGAILLLTAGSLAI----SYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLS 771
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592768706|gb|GAXK01185862.1| (TSA: Calanus finmarchicus comp44758_c1_seq2 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 2.758e-1 Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAP--DDYTRDFGAGIALGSLCILGSIIYFCDFVFA 150 S+ GI +ILE++++ I ++L R GD G L FG G D + +G GA + + + + +++ H+ LE N + LL+ G + SY +P D RD G+ALG + I+ I++ DF+ + Sbjct: 428 SLQGILRILELVLVLIVLILARVGDGGNILHFG-----------GADADFIGIGASVGLTFILLAFIVCHLVG---HLPPTLLEVLINLVGAILLLTAGSLAI----SYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLS 808
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592768707|gb|GAXK01185861.1| (TSA: Calanus finmarchicus comp44758_c1_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 2.769e-1 Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 0 Query: 8 SVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAP--DDYTRDFGAGIALGSLCILGSIIYFCDFVFA 150 S+ GI +ILE++++ I ++L R GD G L FG G D + +G GA + + + + +++ H+ LE N + LL+ G + SY +P D RD G+ALG + I+ I++ DF+ + Sbjct: 428 SLQGILRILELVLVLIVLILARVGDGGNILHFG-----------GADADFIGIGASVGLTFILLAFIVCHLVG---HLPPTLLEVLINLVGAILLLTAGSLAI----SYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLS 808
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Match: gi|592891697|gb|GAXK01066678.1| (TSA: Calanus finmarchicus comp4914_c5_seq3 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 3.512e-1 Identity = 24/92 (26.09%), Postives = 45/92 (48.91%), Query Frame = 0 Query: 10 SGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICAL 101 +GI K+LEI+++ I +++ RFG+ G +G+ D + LG G + ++ ++L +Y+L I LF+ L A+ Sbjct: 113 TGILKMLEIVLVLIVLMICRFGNDGHRKTWGSD-----------DQDFLGQGTTVGYAIIVPAVLLTYLLGANLSILELFINFIGGILFIAI 355
BLAST of EMLSAG00000003932 vs. L. salmonis peptides
Match: EMLSAP00000003932 (pep:novel supercontig:LSalAtl2s:LSalAtl2s211:341756:362886:-1 gene:EMLSAG00000003932 transcript:EMLSAT00000003932 description:"maker-LSalAtl2s211-augustus-gene-3.8") HSP 1 Score: 331.643 bits (849), Expect = 3.590e-117 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MQFEEVLSVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPDDYTRDFGAGIALGSLCILGSIIYFCDFVFAWVTRNRLKREPY 162 MQFEEVLSVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPDDYTRDFGAGIALGSLCILGSIIYFCDFVFAWVTRNRLKREPY Sbjct: 1 MQFEEVLSVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPDDYTRDFGAGIALGSLCILGSIIYFCDFVFAWVTRNRLKREPY 162
BLAST of EMLSAG00000003932 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold59_size442576-snap-gene-0.20 (protein:Tk11662 transcript:maker-scaffold59_size442576-snap-gene-0.20-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100867326") HSP 1 Score: 141.354 bits (355), Expect = 1.429e-43 Identity = 74/168 (44.05%), Postives = 107/168 (63.69%), Query Frame = 0 Query: 1 MQFEE-VLSVSGIFKILEILIMFITVLLHRFGDYGLYLFFGTTSVKMAPGDPGMDVENLGNGALMTGILVSSSLLASYILDGRYHIQRLFLETFWNCLICALLMGTGVETLRNWASYDAPD-DYTRD-----FGAGIALGSLCILGSIIYFCDFVFAWVTRNRLKREP 161 M F+E + S+SG FKILE +++F +++HR+G G LFFGT+ K+ GD +++EN GN L+T ++S L SY++DGRY IQ LE FWN L + +G G++TL W A D D T D +G+G+ALGSLCI+ S++YF DF + R R+K +P Sbjct: 11 MDFKEGLFSLSGFFKILETIVVFSALMVHRYGANGHLLFFGTSLDKLEAGDDALEIENAGNAVLVTYAIISPVLWLSYVIDGRYFIQGFILEPFWNFLGFCMFLGVGIKTLIVWVQAKAADTDITNDSYYSTYGSGLALGSLCIIASLLYFIDFWLSTSARGRVKNDP 178 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003932 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000003932 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000003932 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003932 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003932 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003932 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003932 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s211:341756..362886- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003932-686698 ID=EMLSAG00000003932-686698|Name=EMLSAG00000003932|organism=Lepeophtheirus salmonis|type=gene|length=21131bp|location=Sequence derived from alignment at LSalAtl2s211:341756..362886- (Lepeophtheirus salmonis)back to top Add to Basket
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