EMLSAG00000003946, EMLSAG00000003946-686712 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592763589|gb|GAXK01190979.1| (TSA: Calanus finmarchicus comp335144_c0_seq2 transcribed RNA sequence) HSP 1 Score: 98.9821 bits (245), Expect = 7.427e-23 Identity = 70/222 (31.53%), Postives = 116/222 (52.25%), Query Frame = 0 Query: 1 MINWLNEMNNRDVVVLYFGAIDFEESTYPAL-EKLLKVPLINE--RLNKDYKTNKKWPTLGKAIGEKNNIFIFMR------TNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELC----HNQGDLLKV---AAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNY--LGKNGKVPIDVIHNMNHLN 203 M WL++ + +VV L FG ID+ E T P+L E L++ + + R+NK +K WPTLG+A+ +FIF+R T N ++ + + P H + L++ + IT++YK G +G+DC + + + C + D LK+ + FG G + T C+ + AR CN +K A++ C + NF+ +D+PNY L + V + NM N Sbjct: 169 MKKWLDQ-HPSEVVALNFGNIDWPEETIPSLMETLIEEFSLQDGVRINKAFKATGSWPTLGEAVKSNERLFIFLRDSIGAVTENELEIVKEIKVKPGHDVASKNLTEFEASITTSYKAGDVGSDCSFVLRSNADACKSENQTETDFLKLSFFSKFGKGGAIGTECVHKMARKCNQWVKQAVDQCNYRNFKPNFLLVDYPNYQALAEQNIVQLCQAVNMERAN 831
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592763590|gb|GAXK01190978.1| (TSA: Calanus finmarchicus comp335144_c0_seq1 transcribed RNA sequence) HSP 1 Score: 98.9821 bits (245), Expect = 7.656e-23 Identity = 70/222 (31.53%), Postives = 116/222 (52.25%), Query Frame = 0 Query: 1 MINWLNEMNNRDVVVLYFGAIDFEESTYPAL-EKLLKVPLINE--RLNKDYKTNKKWPTLGKAIGEKNNIFIFMR------TNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELC----HNQGDLLKV---AAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNY--LGKNGKVPIDVIHNMNHLN 203 M WL++ + +VV L FG ID+ E T P+L E L++ + + R+NK +K WPTLG+A+ +FIF+R T N ++ + + P H + L++ + IT++YK G +G+DC + + + C + D LK+ + FG G + T C+ + AR CN +K A++ C + NF+ +D+PNY L + V + NM N Sbjct: 177 MKKWLDQ-HPSEVVALNFGNIDWPEETIPSLMETLIEEFSLQDGVRINKAFKATGSWPTLGEAVKSNERLFIFLRDSIGAVTENELEIVKEIKVKPGHDVASKNLTEFEASITTSYKAGDVGSDCSFVLRSNADACKSENQTETDFLKLSFFSKFGKGGAIGTECVHKMARKCNQWVKQAVDQCNYRNFKPNFLLVDYPNYQALAEQNIVQLCQAVNMERAN 839
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592828609|gb|GAXK01128664.1| (TSA: Calanus finmarchicus comp1507767_c0_seq1 transcribed RNA sequence) HSP 1 Score: 93.5893 bits (231), Expect = 4.893e-21 Identity = 64/213 (30.05%), Postives = 105/213 (49.30%), Query Frame = 0 Query: 1 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINE---RLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPF--HKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHN----QGDLLKV---AAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMN 200 + +WL++ ++ +VVVL+FG I T P L+K LK ++N +K WP +G A+ +F+F+R I++ EF RE+ H S D+ +TS+YK +G DC + + C + Q D LK+ + FG G + T C+ E A+ CN + A+ C + NF+ +D+PNY G K + + +N Sbjct: 855 IAHWLDK-HDSEVVVLHFGNIALPSVTIPRLKKALKEVFSTRAGVKINSSFKKYGNWPLMGDAVENNERVFVFIRDEEEIEENEFVREIKRKPHDDLSNNKSSSDVFMTSSYKAETVGDDCSYILQTSSTACMSDMWRQTDFLKLSIFSRFGKGGTIGTECIHEMAKKCNQWISKAVSNCNFRAFRPNFLLVDYPNYQGLADKNIVQLAFEVN 1490
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592815397|gb|GAXK01139171.1| (TSA: Calanus finmarchicus comp195901_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.612e+0 Identity = 15/54 (27.78%), Postives = 28/54 (51.85%), Query Frame = 0 Query: 89 HKKHKQTL-SKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGA 141 H+KH + SKD + + Y++GP+ +C+ V A ++ ++LK G Sbjct: 636 HEKHAPAVHSKDSVRRPNIYRNGPVKINCQKCVRRACSAVYHNNNMLKETRQGG 797
BLAST of EMLSAG00000003946 vs. L. salmonis peptides
Match: EMLSAP00000003946 (pep:novel supercontig:LSalAtl2s:LSalAtl2s211:896432:899360:1 gene:EMLSAG00000003946 transcript:EMLSAT00000003946 description:"snap_masked-LSalAtl2s211-processed-gene-9.14") HSP 1 Score: 422.55 bits (1085), Expect = 9.842e-152 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 Query: 1 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINERLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMNHLN 203 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINERLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMNHLN Sbjct: 1 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINERLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMNHLN 203
BLAST of EMLSAG00000003946 vs. nr
Match: gi|908415227|ref|XP_013068833.1| (PREDICTED: uncharacterized protein LOC106056570 [Biomphalaria glabrata]) HSP 1 Score: 59.6918 bits (143), Expect = 2.810e-7 Identity = 53/179 (29.61%), Postives = 85/179 (47.49%), Query Frame = 0 Query: 12 DVVVLYFG-AIDFEESTYPALEKLLKVPLINERLNKDYKTNKK--WPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQG--DLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYL 185 ++V L F I E +PAL + L L LNK ++ + K WPTL + I +K IF+F PI ++ H E F+ K+K S+ ST+ + + C V+ E+C ++ +LL+V+ +GF C+ +A C P ++ C E F++ D PN L Sbjct: 15 EIVTLNFNHEIQQPEKVFPALSRQLLTQL-GPMLNKHFRKSPKHVWPTLNQTIRKKKRIFVFY---APIIERPPHDE--FYNKYKWIHSER--FYGSTWIEFGVNDGCNKVVNITKEVCESRNWRELLEVSIIPSGF----CINSNAAKCRPFYHQSLRAC----EQFRFVRNDSPNVL 177
BLAST of EMLSAG00000003946 vs. nr
Match: gi|1005421301|ref|XP_015761166.1| (PREDICTED: uncharacterized protein LOC107340328 [Acropora digitifera] >gi|1005421303|ref|XP_015761175.1| PREDICTED: uncharacterized protein LOC107340328 [Acropora digitifera]) HSP 1 Score: 59.3066 bits (142), Expect = 5.652e-7 Identity = 54/195 (27.69%), Postives = 92/195 (47.18%), Query Frame = 0 Query: 3 NWLNEMNNRDVVVLYF---GAIDFEESTYPALEK-LLKV--PLINERL--NKDYKTNK-KWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGC----QSKTEIINFIQMDFPNY 184 +WL N +VV+++F D+ + +LE LLK+ P L N +K N+ +WPTL +AI IFIFM D+ H + + I +S G + + C + NA C + + +AAFG+ F + C W+ A++C+ + +A E C +S + +NF+ +D+ +Y Sbjct: 125 SWLTS-NPNEVVIIHFNRDSQKDYRKQIAKSLEATLLKLWQPTSTRGLAMNTYFKKNQGRWPTLKEAIRRNQRIFIFM------DNGLLQY---LGGSHDWVVQSNHNINSSWASFGVLASSCSSITTNAKSKCVSMDSFMSLAAFGS-FGL--CTWDMAKVCSKWIGEAQEACYQKRKSYRKTVNFLLVDWLDY 306
BLAST of EMLSAG00000003946 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold112_size353035-snap-gene-2.32 (protein:Tk07397 transcript:maker-scaffold112_size353035-snap-gene-2.32-mRNA-1 annotation:"predicted protein") HSP 1 Score: 114.005 bits (284), Expect = 5.897e-30 Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 0 Query: 3 NWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINE----RLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNN-PIDDKEFHREVPFHKKHKQ-TLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMN 200 +W+ E + R+VV LYFG + +E+ T+ L + LK+ ++N +K WPTLG+AI +F+F+R+ P + +EV ++ + + I ST+ I C ++ E C +L K A F + C+WE AR CNPR+ +A++ C +NF+Q+DFPNY + +D IH +N Sbjct: 267 HWMVE-HPREVVTLYFGELHYEDETFGHLLEALKLQFGQSDSPIQMNTQFKAEGTWPTLGQAIEANQRLFVFIRSAMVPAHELGMVQEVQVSQRDPSPAVIAGSVRILSTFGSRGIDDQCSEVIETNREACSLSSELTKTAVFATFLRSGADCVWEIARKCNPRVPEAVQACLESKANVNFVQVDFPNYPAGSRVQLVDYIHQLN 470 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003946 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000003946 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003946 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003946 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003946 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000003946 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s211:896432..899360+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003946-686712 ID=EMLSAG00000003946-686712|Name=EMLSAG00000003946|organism=Lepeophtheirus salmonis|type=gene|length=2929bp|location=Sequence derived from alignment at LSalAtl2s211:896432..899360+ (Lepeophtheirus salmonis)back to top Add to Basket
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