EMLSAG00000004023, EMLSAG00000004023-686789 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004023 vs. C. finmarchicus
Match: gi|592845580|gb|GAXK01111964.1| (TSA: Calanus finmarchicus comp53794_c0_seq2 transcribed RNA sequence) HSP 1 Score: 67.0106 bits (162), Expect = 1.351e-10 Identity = 84/248 (33.87%), Postives = 120/248 (48.39%), Query Frame = 0 Query: 328 PEFIYGEDGSVVPSYMRSTSASVKKEKQYPLHQSNTIPRRKXXXXXXXXXXXXDLRSTKEGGGGXXXXXXXXXXXXXXXXXXXGRRRSRVGLNHEHRARSERDLSKVTKVKVRTNSKEDSSSLGVGGPTPSSYYKQQKNKMKTTTLIVXXXXXXXXXXXXXXXXXXXRLIPSTRVREDMLHYNQQSSPLSRGLVDKTAAALVHAADNLVQLYKRIAIDYDLNDNMKSELLAKLAXSAVTAQQTLNPVH 575 P+ + + +PSYMRSTSAS+KKEK L + R + +QS +DLR SS + + DR R N RA+SERDLS+V +V V + S D SS G G P ++Q+ KMKTTT+I N+ + TR +PLSR L + A + AAD+LV+LYKR+++D DL+D ++ ELL++L+ A TL V+ Sbjct: 857 PKSVTDDSDRDLPSYMRSTSASIKKEK---LVVTGPAERTRRRSVTHHTQSQNDLRRIDRDADSSSEEDSWTKNRSSSQDR---RGNPDTIRNVPSRAKSERDLSRVARVNV-SASARDISSGGSGSSNPG---QRQRTKMKTTTIISNDGAMVVNQPEPQYAVRGTEAVDVTR------------APLSRQLAQRCGAKMQEAADDLVKLYKRVSLDDDLDDTLRGELLSQLSAGASNTAATLRLVY 1534
BLAST of EMLSAG00000004023 vs. C. finmarchicus
Match: gi|592845581|gb|GAXK01111963.1| (TSA: Calanus finmarchicus comp53794_c0_seq1 transcribed RNA sequence) HSP 1 Score: 67.0106 bits (162), Expect = 1.529e-10 Identity = 84/248 (33.87%), Postives = 119/248 (47.98%), Query Frame = 0 Query: 328 PEFIYGEDGSVVPSYMRSTSASVKKEKQYPLHQSNTIPRRKXXXXXXXXXXXXDLRSTKEGGGGXXXXXXXXXXXXXXXXXXXGRRRSRVGLNHEHRARSERDLSKVTKVKVRTNSKEDSSSLGVGGPTPSSYYKQQKNKMKTTTLIVXXXXXXXXXXXXXXXXXXXRLIPSTRVREDMLHYNQQSSPLSRGLVDKTAAALVHAADNLVQLYKRIAIDYDLNDNMKSELLAKLAXSAVTAQQTLNPVH 575 P+ + + +PSYMRSTSAS+KKEK L + R + +QS +DLR SS + + DR R N RA+SERDLS+V +V V + S D SS G G P ++Q+ KMKTTT+I N+ + TR PLSR L + A + AAD+LV+LYKR+++D DL+D ++ ELL++L+ A TL V+ Sbjct: 857 PKSVTDDSDRDLPSYMRSTSASIKKEK---LVVTGPAERTRRRSVTHHTQSQNDLRRIDRDADSSSEEDSWTKNRSSSQDR---RGNPDTIRNVPSRAKSERDLSRVARVNV-SASARDISSGGSGSSNPG---QRQRTKMKTTTIISNDGAMVVNQPEPQYAVRGTEAVDVTRA------------PLSRQLAQRCGAKMQEAADDLVKLYKRVSLDDDLDDTLRGELLSQLSAGASNTAATLRLVY 1534
BLAST of EMLSAG00000004023 vs. L. salmonis peptides
Match: EMLSAP00000004023 (pep:novel supercontig:LSalAtl2s:LSalAtl2s215:307199:314630:1 gene:EMLSAG00000004023 transcript:EMLSAT00000004023 description:"snap_masked-LSalAtl2s215-processed-gene-3.17") HSP 1 Score: 1198.34 bits (3099), Expect = 0.000e+0 Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0 Query: 1 MPFSDLPSIGKDTGDAAFLSESETVISDSFSDGDSLSLHIKEEKISPRKERIITERLREMAAKFERDEMVSMEKELEFLEKELCRRRKKRNIWNSLTRRLSKEIFGKFNENIRVWENSEIPKPIYSNVQEFHPDSKTHEEMCRRSKRRPSSFFNLKNISVASSITIHSSPNTPSLSEFPPSISKKNLRSHRRCRSLTHNYRVYAPPFLTSSPPIGAKSMWIPMTSATLGRNRAVVVSSAPSNLTRIISLQNLSCINKCEIVDDCRTIGNFSHSEREDLDSGLRRTCSLSDLNKPIAPRRILPAPPATGTTIINNYKNLGGNAAYKSGPEFIYGEDGSVVPSYMRSTSASVKKEKQYPLHQSNTIPRRKSSIGQMSSQSTSDLRSTKEGGGGSSSNRIEDSSSEENSDRKSGRRRSRVGLNHEHRARSERDLSKVTKVKVRTNSKEDSSSLGVGGPTPSSYYKQQKNKMKTTTLIVNNNDEDNGLNINHNNNNELRLIPSTRVREDMLHYNQQSSPLSRGLVDKTAAALVHAADNLVQLYKRIAIDYDLNDNMKSELLAKLAXSAVTAQQTLNPVHPGMAHVQLS 584 MPFSDLPSIGKDTGDAAFLSESETVISDSFSDGDSLSLHIKEEKISPRKERIITERLREMAAKFERDEMVSMEKELEFLEKELCRRRKKRNIWNSLTRRLSKEIFGKFNENIRVWENSEIPKPIYSNVQEFHPDSKTHEEMCRRSKRRPSSFFNLKNISVASSITIHSSPNTPSLSEFPPSISKKNLRSHRRCRSLTHNYRVYAPPFLTSSPPIGAKSMWIPMTSATLGRNRAVVVSSAPSNLTRIISLQNLSCINKCEIVDDCRTIGNFSHSEREDLDSGLRRTCSLSDLNKPIAPRRILPAPPATGTTIINNYKNLGGNAAYKSGPEFIYGEDGSVVPSYMRSTSASVKKEKQYPLHQSNTIPRRKSSIGQMSSQSTSDLRSTKEGGGGSSSNRIEDSSSEENSDRKSGRRRSRVGLNHEHRARSERDLSKVTKVKVRTNSKEDSSSLGVGGPTPSSYYKQQKNKMKTTTLIVNNNDEDNGLNINHNNNNELRLIPSTRVREDMLHYNQQSSPLSRGLVDKTAAALVHAADNLVQLYKRIAIDYDLNDNMKSELLAKLAXSAVTAQQTLNPVHPGMAHVQLS Sbjct: 1 MPFSDLPSIGKDTGDAAFLSESETVISDSFSDGDSLSLHIKEEKISPRKERIITERLREMAAKFERDEMVSMEKELEFLEKELCRRRKKRNIWNSLTRRLSKEIFGKFNENIRVWENSEIPKPIYSNVQEFHPDSKTHEEMCRRSKRRPSSFFNLKNISVASSITIHSSPNTPSLSEFPPSISKKNLRSHRRCRSLTHNYRVYAPPFLTSSPPIGAKSMWIPMTSATLGRNRAVVVSSAPSNLTRIISLQNLSCINKCEIVDDCRTIGNFSHSEREDLDSGLRRTCSLSDLNKPIAPRRILPAPPATGTTIINNYKNLGGNAAYKSGPEFIYGEDGSVVPSYMRSTSASVKKEKQYPLHQSNTIPRRKSSIGQMSSQSTSDLRSTKEGGGGSSSNRIEDSSSEENSDRKSGRRRSRVGLNHEHRARSERDLSKVTKVKVRTNSKEDSSSLGVGGPTPSSYYKQQKNKMKTTTLIVNNNDEDNGLNINHNNNNELRLIPSTRVREDMLHYNQQSSPLSRGLVDKTAAALVHAADNLVQLYKRIAIDYDLNDNMKSELLAKLAXSAVTAQQTLNPVHPGMAHVQLS 584
BLAST of EMLSAG00000004023 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold69_size418775-snap-gene-2.28 (protein:Tk03257 transcript:maker-scaffold69_size418775-snap-gene-2.28-mRNA-1 annotation:"mitogen-activated protein kinase-binding protein 1-like isoform x2") HSP 1 Score: 150.214 bits (378), Expect = 3.403e-38 Identity = 128/342 (37.43%), Postives = 172/342 (50.29%), Query Frame = 0 Query: 279 DSGLRRTCSLSDLNKPIAPRRILPAPPATGTTIINNYKNLGGNAAYKSGPEF---IYGEDGSV------VPSYMRSTSASVKKEKQYPLHQSNTIP---RRKSSIGQMSSQSTSDLRSTKEGGGGSSSNRIED-SSSEENSDRKSGRR------------------RSRVG------------LNHEHRARSERDLSKVTKVKVRTNSKEDSSSLGVGGPTPSSYYKQQKNKMKTTTLIVNNNDEDNGLNINHNNNNELRLIPSTRVREDMLHYNQQSSPLSRGLVDKTAAALVHAADNLVQLYKRIAIDYDLNDNMKSELLAKLAXSAVTAQQTLNPVHPG 577 D+ LRR CSLSDLN P RRILPAPP N+ G + + P+ + E+ S +PSYM+STSAS KKE+ +P RR+SS+GQ +QS DLR ++ED SSSEE + SG R+R+G + + +RSERDLSKVTKV+VR++ K + S L G P + KMKTTT+IVN D ++H + + PS V +PL+ L + TA +L A+DNLVQLYKRI++DYDL + ++E L +LA SA +AQ TL V PG Sbjct: 1374 DANLRRACSLSDLNHPPVTRRILPAPPT----------NVSGRKSERGNPKMTRRVSRENLSTTPTNDSIPSYMKSTSASAKKERPT---GGVVVPQNGRRRSSVGQ--AQSIGDLRQII---------KVEDDSSSEETNLDSSGHSRRRSNSNDRRSATLERSPRTRLGGSTHNLTSPNSQAHPSNHSRSERDLSKVTKVRVRSSPKNEVSPLSQGSNRP-------RGKMKTTTMIVN----DPSGPVSHYSQPPMDYNPSIDVVR---------APLNWQLAEATARSLQLASDNLVQLYKRISLDYDLEEAQRTEFLYQLASSAGSAQHTLRAVLPG 1671 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004023 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004023 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000004023 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004023 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004023 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004023 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004023 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s215:307199..314630+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004023-686789 ID=EMLSAG00000004023-686789|Name=EMLSAG00000004023|organism=Lepeophtheirus salmonis|type=gene|length=7432bp|location=Sequence derived from alignment at LSalAtl2s215:307199..314630+ (Lepeophtheirus salmonis)back to top Add to Basket
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