EMLSAG00000004304, EMLSAG00000004304-687070 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592849032|gb|GAXK01108512.1| (TSA: Calanus finmarchicus comp1902898_c0_seq1 transcribed RNA sequence) HSP 1 Score: 116.316 bits (290), Expect = 4.768e-30 Identity = 73/176 (41.48%), Postives = 108/176 (61.36%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGV----SKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEIIYNYVSVYGSVNQTALDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDF 172
+V +S++IA +FI+ +F R+TVVTT+ +TT L EVYFPAVTICNINQVR+SF ++ + + I +++ +FY+GSD + E+ +K T YV E Y+ ++ G+ + + + YL+ +RE IE G AVQEP G MILKAS+ ++K GTS DF
Sbjct: 186 IVCASIMIASFFIFTAASDFNRSTVVTTIHSTTESLDEVYFPAVTICNINQVRQSFFLDMDLDYKKQEAKEIIRLLYRQFYSGSDRNASEIEQGKVKHFLTSPKYVAAEFNYHKLTQIGN-KMFNISDSKAYLEKFRELIEKGAQLTRLAVQEPLGHMILKASFGKRTKMGTSKDF 710
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592750765|gb|GAXK01203648.1| (TSA: Calanus finmarchicus comp1399416_c0_seq1 transcribed RNA sequence) HSP 1 Score: 87.8113 bits (216), Expect = 4.771e-19 Identity = 60/182 (32.97%), Postives = 108/182 (59.34%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEII-YNYVSVYGSVNQTA---------LDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDF 172
+V++S+ +A F++ +F +TVVTT+ TTTA LSEVYFP+V +C+INQ+R+S L VSK I ++ FY+G E+L +E +I++S T++ V+K ++ ++ +S S +++A LD W+ +L + R+FIE + AV++P + ++ A + + ++ F
Sbjct: 1732 IVLASLAVATIFLHASIMDFTSSTVVTTIATTTASLSEVYFPSVILCSINQIRKSLFRGLEVSKTSHI-ELFLQTFYSGRAENLTEDEMKIIESYATREKIVKKLMLHWHLISDTNSTDRSAPSNQNLSAYLDTWQTFLADNRQFIEHFDFIRDLAVEDPGDSPVIMAKFGSEVLPQNTTSF 2274
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592948758|gb|GAXK01009795.1| (TSA: Calanus finmarchicus comp2848978_c0_seq1 transcribed RNA sequence) HSP 1 Score: 73.559 bits (179), Expect = 1.776e-14 Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEK-----EIIYNYVSVYGS--VNQTALDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDF 172
+V+ ++ +A +F++ +F +TVVTT++TTTAPLSEV+FP + +C+INQ+R+S + +GVS + + ++ FY+G + L EE ++ I T+ V K +I N + S VNQ L++ + + + FI + AV+EP + +L ASY K ++ F
Sbjct: 118 IVIGALCVAAFFLFMAAKDFTSSTVVTTIETTTAPLSEVFFPTIILCSINQIRQSLFKSVGVSDSSQVR-LLLQTFYSGMNRALTEEEISTIQGIATRPETVLKLQKHWHLISNTNTTDWSSPVNQN-LESLKRFSEENEAFINTFDFIRDLAVEEPGDSSVLSASYGSKVLHMNTTSF 648
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592855636|gb|GAXK01101908.1| (TSA: Calanus finmarchicus comp4708268_c0_seq1 transcribed RNA sequence) HSP 1 Score: 63.1586 bits (152), Expect = 3.746e-12 Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0
Query: 12 FIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTG 79
F+Y T +F +TVV TVDT TAPLSEV+FP+V +CNINQVR+SF ELG+ N + ++ +F G
Sbjct: 146 FLYSNTIDFMNSTVVITVDTMTAPLSEVFFPSVVVCNINQVRKSFFAELGIFDNEEFTRQVYHDFILG 349
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592848419|gb|GAXK01109125.1| (TSA: Calanus finmarchicus comp850273_c0_seq1 transcribed RNA sequence) HSP 1 Score: 66.2402 bits (160), Expect = 6.813e-12 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTG-SDEDLKPEEREILKSIFTQKFYVEKEIIYNYVSVYGSVNQTAL 122
+V ++ A F+Y T +F ATVVTTVDT T PLSEV+FP+V +CNINQVR+SF ELG+ +N T ++ +F G ++ + E E+ +K V ++I+ Y++ + +T +
Sbjct: 2009 IVCVAMGCAAIFLYSNTIDFMNATVVTTVDTMTVPLSEVFFPSVVVCNINQVRKSFFAELGIYENETFIRQVYQDFILGKANHSFQQENFEVS----ARKRAVHEQIMKEYLAKHNETLETKM 2365
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592877589|gb|GAXK01080153.1| (TSA: Calanus finmarchicus comp564949_c0_seq2 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 8.307e-10 Identity = 40/121 (33.06%), Postives = 71/121 (58.68%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDE----------DLKPEEREILKSIFTQKFYVEKEIIYNYV 111
+V +SV+ +F++ T EF ++TV TT+D+ PL++V FP+V +CNINQ+R+S ELG N T+ +++ +F G+ + D + +E LK ++FY +++ NY+
Sbjct: 1359 IVFASVVSGGFFLHDNTSEFLKSTVQTTLDSM-VPLTQVLFPSVVVCNINQIRKSLFNELGFYDNETLVRIMYEDFIKGTKDNSDNSTYQGSDFEDDEHHSLKR---KEFY---QVLRNYL 1700
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592877590|gb|GAXK01080152.1| (TSA: Calanus finmarchicus comp564949_c0_seq1 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 8.333e-10 Identity = 40/121 (33.06%), Postives = 71/121 (58.68%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDE----------DLKPEEREILKSIFTQKFYVEKEIIYNYV 111
+V +SV+ +F++ T EF ++TV TT+D+ PL++V FP+V +CNINQ+R+S ELG N T+ +++ +F G+ + D + +E LK ++FY +++ NY+
Sbjct: 1359 IVFASVVSGGFFLHDNTSEFLKSTVQTTLDSM-VPLTQVLFPSVVVCNINQIRKSLFNELGFYDNETLVRIMYEDFIKGTKDNSDNSTYQGSDFEDDEHHSLKR---KEFY---QVLRNYL 1700
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592916552|gb|GAXK01041823.1| (TSA: Calanus finmarchicus comp2069983_c0_seq2 transcribed RNA sequence) HSP 1 Score: 57.3806 bits (137), Expect = 2.346e-9 Identity = 28/96 (29.17%), Postives = 59/96 (61.46%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIF 96
++++S+ +A YF+ T ++ +T +TT+ ++T+ L+ +Y+P+VT+C+ NQ+R +F +G+ + + F+TG + + EE + LK I
Sbjct: 130 VILASLGLALYFLISNTTDYMDSTTITTLKSSTSKLTNIYYPSVTVCSRNQIRETFWTSIGLKDSPLKKKKMLQNFFTGRAKAMSDEENKTLKGIM 417
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592916553|gb|GAXK01041822.1| (TSA: Calanus finmarchicus comp2069983_c0_seq1 transcribed RNA sequence) HSP 1 Score: 57.3806 bits (137), Expect = 2.480e-9 Identity = 28/96 (29.17%), Postives = 59/96 (61.46%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIF 96
++++S+ +A YF+ T ++ +T +TT+ ++T+ L+ +Y+P+VT+C+ NQ+R +F +G+ + + F+TG + + EE + LK I
Sbjct: 130 VILASLGLALYFLISNTTDYMDSTTITTLKSSTSKLTNIYYPSVTVCSRNQIRETFWTSIGLKDSPLKKKKMLQNFFTGRAKAMSDEENKTLKGIM 417
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Match: gi|592764210|gb|GAXK01190358.1| (TSA: Calanus finmarchicus comp6211012_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.9138 bits (128), Expect = 9.066e-9 Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARAXXXXXXXXXXAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMI---FAEFYTGSDEDLKPEERE 90
+++SS ++A + + +TT+ TTAPLS +YFP++TICNI+Q++RS LE++ +S T+ D + F +Y +D E++
Sbjct: 147 IILSSTVVAIGLFVSSLTSYLHSRPMTTISDTTAPLSHLYFPSITICNISQLQRSVLEDMDLSGG-TLPDWVEEYFISYYIEGTKDTLGTEKQ 422
BLAST of EMLSAG00000004304 vs. L. salmonis peptides
Match: EMLSAP00000004304 (pep:novel supercontig:LSalAtl2s:LSalAtl2s225:334002:387593:1 gene:EMLSAG00000004304 transcript:EMLSAT00000004304 description:"maker-LSalAtl2s225-snap-gene-3.16") HSP 1 Score: 362.073 bits (928), Expect = 8.456e-129 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARATVVTTVDTTTAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEIIYNYVSVYGSVNQTALDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDFNNIS 176
MVMSSVLIAFYFIYKQTFEFARATVVTTVDTTTAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEIIYNYVSVYGSVNQTALDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDFNNIS
Sbjct: 1 MVMSSVLIAFYFIYKQTFEFARATVVTTVDTTTAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEIIYNYVSVYGSVNQTALDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDFNNIS 176
BLAST of EMLSAG00000004304 vs. L. salmonis peptides
Match: EMLSAP00000011307 (pep:novel supercontig:LSalAtl2s:LSalAtl2s77:248871:264430:1 gene:EMLSAG00000011307 transcript:EMLSAT00000011307 description:"snap_masked-LSalAtl2s77-processed-gene-2.5") HSP 1 Score: 110.153 bits (274), Expect = 1.227e-28 Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 0
Query: 51 QVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEIIYNYVSVYGSVNQTALDNWEEYLDNYREFIEGGNHFGSFAVQEPNGTMILKASYDGKSKDGTSSDFN 173
+VR+SF +L ++ N TI D+++ +FYTGS P+E E ++++F + YV+ E Y+ ++ GS +Q+ L NW Y + Y E+I+ G F AVQEP G MIL+ASY K + G S+DFN
Sbjct: 4 KVRKSFFNDLNINNNRTIVDLLYQQFYTGSKNFPNPDEAEFIRNLFKSETYVKSEYQYHCLTQRGSCSQSQLANWTAYFEKYGEWIQKGFQFTRLAVQEPYGVMILRASYGTKKRYGXSTDFN 126
BLAST of EMLSAG00000004304 vs. L. salmonis peptides
Match: EMLSAP00000000267 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1040:7948:67163:-1 gene:EMLSAG00000000267 transcript:EMLSAT00000000267 description:"maker-LSalAtl2s1040-snap-gene-0.10") HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-14 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 1 MVMSSVLIAFYFIYKQTFEFARATVVTTVDTTTAPLSEVYFPAVTICNINQVRRSFLEELGVSKNWTISDMIFAEFYTGSDEDLKPEEREILKSIFTQKFYVEKEIIYNYV 111
+V S+ A +F+Y T ++ ATVVTTVDT T PL+E +FP+V +CNINQVR+SF +ELG+ N T I+ ++ G E P++ TQK + ++I+ Y+
Sbjct: 195 IVSFSMGTAAFFLYNNTMDYLDATVVTTVDTMTVPLTEXFFPSVVVCNINQVRKSFFQELGIYDNETFIRQIYFDYIEGKAEHNSPKDD-------TQKIALHEKILKEYL 298 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004304 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004304 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000004304 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000004304 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004304 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004304 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004304 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s225:334002..387593+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004304-687070 ID=EMLSAG00000004304-687070|Name=EMLSAG00000004304|organism=Lepeophtheirus salmonis|type=gene|length=53592bp|location=Sequence derived from alignment at LSalAtl2s225:334002..387593+ (Lepeophtheirus salmonis)back to top Add to Basket
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