EMLSAG00000004477, EMLSAG00000004477-687243 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840073|gb|GAXK01117471.1| (TSA: Calanus finmarchicus comp607596_c1_seq8 transcribed RNA sequence) HSP 1 Score: 72.4034 bits (176), Expect = 1.190e-13 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0 Query: 290 LCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKKNNVVERETTNDILNKSGANTNNN 393 +CI + C+G DC+ DSSDE CF PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K + N LNK +++ N Sbjct: 249 MCIPSERGCDGELDCLQGDSSDEIGCFMPYVLISAGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARKAD-------NKPLNKMNTSSSTN 539
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840076|gb|GAXK01117468.1| (TSA: Calanus finmarchicus comp607596_c1_seq5 transcribed RNA sequence) HSP 1 Score: 73.1738 bits (178), Expect = 1.620e-13 Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0 Query: 289 YLCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKK 370 +CI + C+G DC+ DSSDE CF PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K Sbjct: 633 LMCIPSERGCDGELDCLQGDSSDEIGCFMPYVLISAGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARK 878
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840080|gb|GAXK01117464.1| (TSA: Calanus finmarchicus comp607596_c1_seq1 transcribed RNA sequence) HSP 1 Score: 73.559 bits (179), Expect = 4.003e-13 Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0 Query: 289 YLCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKK 370 +CI + C+G DC+ DSSDE CF PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K Sbjct: 1074 LMCIPSERGCDGELDCLQGDSSDEIGCFMPYVLISAGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARK 1319
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840070|gb|GAXK01117474.1| (TSA: Calanus finmarchicus comp607596_c1_seq11 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 4.614e-6 Identity = 26/79 (32.91%), Postives = 42/79 (53.16%), Query Frame = 0 Query: 315 CFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKKNNVVERETTNDILNKSGANTNNN 393 C+ PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K + N LNK +++ N Sbjct: 249 CYMPYVLISGGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARKAD-------NKPLNKMNTSSSTN 464
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840075|gb|GAXK01117469.1| (TSA: Calanus finmarchicus comp607596_c1_seq6 transcribed RNA sequence) HSP 1 Score: 49.6766 bits (117), Expect = 9.797e-6 Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0 Query: 315 CFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKK 370 C+ PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K Sbjct: 633 CYMPYVLISGGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARK 800
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840078|gb|GAXK01117466.1| (TSA: Calanus finmarchicus comp607596_c1_seq3 transcribed RNA sequence) HSP 1 Score: 49.6766 bits (117), Expect = 1.251e-5 Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0 Query: 315 CFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKK 370 C+ PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K Sbjct: 958 CYMPYVLISGGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARK 1125
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592840079|gb|GAXK01117465.1| (TSA: Calanus finmarchicus comp607596_c1_seq2 transcribed RNA sequence) HSP 1 Score: 49.6766 bits (117), Expect = 1.434e-5 Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0 Query: 315 CFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKK 370 C+ PY+ S GV T LC + H + + K+ M RYN D+++RKD ++A+K Sbjct: 1074 CYMPYVLISGGGVFLTLTILGTGLCLIQHHSMMVKHGMTRYNNDLVRRKDKVKARK 1241
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592950299|gb|GAXK01008254.1| (TSA: Calanus finmarchicus comp137059_c3_seq4 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.350e+0 Identity = 32/102 (31.37%), Postives = 47/102 (46.08%), Query Frame = 0 Query: 84 KDCVLIFHATWGKQLHLTFDQFDALSEEVDSCVSSTTKIFT-IDDSGER------NKLAHYCNSLPTKKLIVFDTTDKVELIIFHSNIDLI-------YEYM 171 +DC I AT GK +HL+F F+ L +E D C ++F+ DDSG NK+ S+ L+ F + D + F +N +I YEY Sbjct: 34 EDCDWIIEATQGKNVHLSFLTFE-LEDEQD-CGYDFIEVFSGYDDSGPSYGRFCGNKIPPEIISVDEALLLRFKSDDTINSKGFSANFVIIDESDNKDYEYF 333
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592947146|gb|GAXK01011407.1| (TSA: Calanus finmarchicus comp23842_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 7.207e+0 Identity = 13/38 (34.21%), Postives = 22/38 (57.89%), Query Frame = 0 Query: 180 SEDAIKNESYINPTEIIITFKDPPSKAPKCRYPEDKDC 217 SED++ +E+ + E+II + DPP P+ +D C Sbjct: 1221 SEDSLHHENQLIIGEVIIVYGDPPDVIPQAGLDDDLPC 1334
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Match: gi|592817014|gb|GAXK01137554.1| (TSA: Calanus finmarchicus comp164997_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 8.572e+0 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 0 Query: 125 IDDSGERNKLAHYCNSLPTKK-LIVFDTTDKVELIIFHSNIDLI 167 I SGERN C SL +K ++VF T KVEL +FH D++ Sbjct: 3747 IFPSGERNT----CFSLSDQK*VLVFQPTGKVELQVFHPTSDVL 3866
BLAST of EMLSAG00000004477 vs. L. salmonis peptides
Match: EMLSAP00000004477 (pep:novel supercontig:LSalAtl2s:LSalAtl2s232:660444:680905:-1 gene:EMLSAG00000004477 transcript:EMLSAT00000004477 description:"maker-LSalAtl2s232-snap-gene-6.9") HSP 1 Score: 1055.43 bits (2728), Expect = 0.000e+0 Identity = 512/512 (100.00%), Postives = 512/512 (100.00%), Query Frame = 0 Query: 1 MVDDDLGLSLSLLSISIYSKTEATQPSRCCSSLFTSFWSWVHKLPKEPRLYLIPRDVSSISNPMIFKKDQPLRGSINNIRSEFKDCVLIFHATWGKQLHLTFDQFDALSEEVDSCVSSTTKIFTIDDSGERNKLAHYCNSLPTKKLIVFDTTDKVELIIFHSNIDLIYEYMGSHDETDESEDAIKNESYINPTEIIITFKDPPSKAPKCRYPEDKDCIHIYKELFINKQSMKNNTSDYDDVYEEKIIPETDPLFSTGIKSECAHQMRKVCKLSRFCGEGDGILCNKTMYLCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKKNNVVERETTNDILNKSGANTNNNGKSLTLNVSSLNNNNNLHKETPKVEIFKPEPEVKKRVVIESEATTASSSNLQPKRPEENALGMPISSIMKNSTNNSKKDAEVIPLXQDNDEEMNFDSMDGEELMTHSVGYGYRFEYRDT 512 MVDDDLGLSLSLLSISIYSKTEATQPSRCCSSLFTSFWSWVHKLPKEPRLYLIPRDVSSISNPMIFKKDQPLRGSINNIRSEFKDCVLIFHATWGKQLHLTFDQFDALSEEVDSCVSSTTKIFTIDDSGERNKLAHYCNSLPTKKLIVFDTTDKVELIIFHSNIDLIYEYMGSHDETDESEDAIKNESYINPTEIIITFKDPPSKAPKCRYPEDKDCIHIYKELFINKQSMKNNTSDYDDVYEEKIIPETDPLFSTGIKSECAHQMRKVCKLSRFCGEGDGILCNKTMYLCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKKNNVVERETTNDILNKSGANTNNNGKSLTLNVSSLNNNNNLHKETPKVEIFKPEPEVKKRVVIESEATTASSSNLQPKRPEENALGMPISSIMKNSTNNSKKDAEVIPLXQDNDEEMNFDSMDGEELMTHSVGYGYRFEYRDT Sbjct: 1 MVDDDLGLSLSLLSISIYSKTEATQPSRCCSSLFTSFWSWVHKLPKEPRLYLIPRDVSSISNPMIFKKDQPLRGSINNIRSEFKDCVLIFHATWGKQLHLTFDQFDALSEEVDSCVSSTTKIFTIDDSGERNKLAHYCNSLPTKKLIVFDTTDKVELIIFHSNIDLIYEYMGSHDETDESEDAIKNESYINPTEIIITFKDPPSKAPKCRYPEDKDCIHIYKELFINKQSMKNNTSDYDDVYEEKIIPETDPLFSTGIKSECAHQMRKVCKLSRFCGEGDGILCNKTMYLCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTCLTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKKNNVVERETTNDILNKSGANTNNNGKSLTLNVSSLNNNNNLHKETPKVEIFKPEPEVKKRVVIESEATTASSSNLQPKRPEENALGMPISSIMKNSTNNSKKDAEVIPLXQDNDEEMNFDSMDGEELMTHSVGYGYRFEYRDT 512
BLAST of EMLSAG00000004477 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold483_size159862-snap-gene-0.33 (protein:Tk08683 transcript:maker-scaffold483_size159862-snap-gene-0.33-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_97244") HSP 1 Score: 77.411 bits (189), Expect = 4.074e-16 Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 0 Query: 259 KSECAHQMRKVCKLSRFCGEGD-GILCNKTMYLCIDPAQLCNGVKDCIGDDSSDEFRCFFPYMSNSLFGVVGIFVTC---LTTLCSVNHKTSLRKNNMVRYNGDVLKRKDVIRAKKN 371 +SEC + + +C SR C E +CNKT+Y C+D AQ C+ V DC DD SDE C S G++ + C ++T H+ SL++ NM+ Y D++KRKD I+ K N Sbjct: 153 RSECKEEGKILCHSSRKCSESTISAICNKTIYGCLDSAQACDSVNDCKQDDDSDEKYC----SQFSRGGILLFLILCTGGISTFFICKHQWSLKEFNMISYKNDIIKRKDAIKIKNN 265 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004477 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004477 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
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BLAST of EMLSAG00000004477 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004477 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004477 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004477 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004477 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s232:660444..680905- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004477-687243 ID=EMLSAG00000004477-687243|Name=EMLSAG00000004477|organism=Lepeophtheirus salmonis|type=gene|length=20462bp|location=Sequence derived from alignment at LSalAtl2s232:660444..680905- (Lepeophtheirus salmonis)back to top Add to Basket
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