EMLSAG00000005216, EMLSAG00000005216-687982 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005216
Unique NameEMLSAG00000005216-687982
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592805766|gb|GAXK01148802.1| (TSA: Calanus finmarchicus comp742106_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 3.868e-10
Identity = 30/87 (34.48%), Postives = 56/87 (64.37%), Query Frame = 0
Query:   15 LEWESCN--PDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            LE+  C+  P+ L    +++ P+P+ +++G ++   A   L ++L     V  KLVK+ I++IPIPC++   G+++GSCSY ++EI+
Sbjct:  135 LEYGFCDGSPEPLSLDLMSVEPFPIELLTGHNITFAAQITLTEELPMGTTVHFKLVKQDIINIPIPCLDI-DGINIGSCSYDVDEIL 392          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592805765|gb|GAXK01148803.1| (TSA: Calanus finmarchicus comp742106_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 55.0694 bits (131), Expect = 6.259e-10
Identity = 29/85 (34.12%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   15 LEWESCN--PDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEE 97
            LE+  C+  P+ L    +++ P+P+ +++G ++   A   L ++L     V  KLVK+ I++IPIPC++   G+++GSCSY ++E
Sbjct:  135 LEYGFCDGSPEPLSLDLMSVEPFPIELLTGHNITFAAQITLTEELPMGTTVHFKLVKQDIINIPIPCLDI-DGINIGSCSYDVDE 386          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592766305|gb|GAXK01188263.1| (TSA: Calanus finmarchicus comp10513_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 56.6102 bits (135), Expect = 1.311e-9
Identity = 24/69 (34.78%), Postives = 46/69 (66.67%), Query Frame = 0
Query:   31 ALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
             + P+P+P+V+GT LD+  LF L++       V++ +  +G+++IPIPC+E    + LGSC Y +++++
Sbjct:  869 TIEPFPIPLVTGTVLDVNVLFQLNEMCPAGTTVKMAMELQGLINIPIPCLEV-DDIALGSCEYAIDDLL 1072          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592892529|gb|GAXK01065846.1| (TSA: Calanus finmarchicus comp4881_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.9138 bits (128), Expect = 4.109e-9
Identity = 35/108 (32.41%), Postives = 60/108 (55.56%), Query Frame = 0
Query:    2 IFALLFIAVSG------EDLEWESCN----PDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
             FAL  +A++       + LE+  C+    P +L    I++ P+P+ V +G S+ L     L++ +     V LK+ K+G++ IP+PC+E   GLHLGSC Y  + ++
Sbjct:   71 FFALACVALASARNIKIDQLEYGFCDGSAEPASLDS--ISVEPFPIVVATGESITLSVQLTLNEPVPVGAQVSLKIKKEGLIDIPLPCLEI-EGLHLGSCDYDADTLL 385          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592850395|gb|GAXK01107149.1| (TSA: Calanus finmarchicus comp36345_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 1.182e-8
Identity = 32/110 (29.09%), Postives = 56/110 (50.91%), Query Frame = 0
Query:    3 FALLFIAVSGEDLEWE-------------SCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
              LL  A S  D+  E             S +P+      +  +P+P+ + +G  + L A   L ++L     V++K+VK+G+++IP PC+E   G  +GSCSY  ++I+
Sbjct:   41 LTLLVAAASARDIRLELLAPPKEVEFGFCSGSPEPASLDYLTATPFPIEMATGNVITLAAQITLLEELPVGTTVDIKIVKEGLINIPFPCVEV-EGQMVGSCSYNGDDIL 367          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592837693|gb|GAXK01119851.1| (TSA: Calanus finmarchicus comp652609_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 2.541e-6
Identity = 21/68 (30.88%), Postives = 37/68 (54.41%), Query Frame = 0
Query:   32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
              PYP+ + +     ++ +  L K +   + +E+++ K GI+ IP PC E   G H GSC+Y  +E +
Sbjct:  486 FEPYPIQIKTEGVEAVRTMIHLLKSIPEKISIEVEITKLGIIDIPTPCFEW-EGYHFGSCTYDGDEFL 686          

HSP 2 Score: 30.4166 bits (67), Expect = 8.562e-1
Identity = 12/33 (36.36%), Postives = 22/33 (66.67%), Query Frame = 0
Query:   67 LVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            +V++G++ + IPC+E      +GSC+Y  EE +
Sbjct: 1059 IVREGLIDMTIPCLEWEDWGLVGSCTYDAEEFL 1157          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592837694|gb|GAXK01119850.1| (TSA: Calanus finmarchicus comp652609_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 3.265e-6
Identity = 21/68 (30.88%), Postives = 37/68 (54.41%), Query Frame = 0
Query:   32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
              PYP+ + +     ++ +  L K +   + +E+++ K GI+ IP PC E   G H GSC+Y  +E +
Sbjct:  486 FEPYPIQIKTEGVEAVRTMIHLLKSIPEKISIEVEITKLGIIDIPTPCFEW-EGYHFGSCTYDGDEFL 686          

HSP 2 Score: 39.6614 bits (91), Expect = 7.018e-4
Identity = 20/71 (28.17%), Postives = 38/71 (53.52%), Query Frame = 0
Query:   29 DIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            D+ + P+P+ +    +  ++ + DL   +     +   +VK+GI+ I IPC+E      +GSC+Y  EE +
Sbjct: 1059 DLDIYPFPMSMCLCKTNYIRIVADLLVTIPLGATISFTIVKEGIIPITIPCLEWEDWGLVGSCTYDAEEFL 1271          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592778681|gb|GAXK01175887.1| (TSA: Calanus finmarchicus comp2962_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 9.448e-3
Identity = 23/82 (28.05%), Postives = 44/82 (53.66%), Query Frame = 0
Query:   18 ESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            +  N D L   +I++ P+PL + +G  + L     L++ +     V+LK+ ++GI+ I          +H+GSCSY  +E++
Sbjct:  186 DGANQDVLSLDNISVEPFPLVINTGAEITLNVQITLNEPVPAGATVDLKIKREGIIPI-PIPCLPIGDIHIGSCSYSGDELL 428          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592913583|gb|GAXK01044792.1| (TSA: Calanus finmarchicus comp308971_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.839e-2
Identity = 16/64 (25.00%), Postives = 36/64 (56.25%), Query Frame = 0
Query:   32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKK-GIVSIPIPCIESPSGLHLGSCSYK 94
            + PYP+      ++ + A  +L +++      ++++ K+ G +S+ +PCI+S     +GSC Y+
Sbjct: 1970 IEPYPVLFEPNETVSISAWMNLFENITAGSQFKVRITKEDGPISVLMPCIDSNEWGLIGSCDYE 2161          
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592834757|gb|GAXK01122787.1| (TSA: Calanus finmarchicus comp4667637_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.431e-1
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 0
Query:   32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGI 72
            LS YPL +V  T+ D+   FD+ K L G+V   L   KK +
Sbjct: 1013 LSGYPLTLVPETTRDITEAFDILKQLYGNVSRVLVFQKKKL 1135          
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000005216 (pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:371:-1 gene:EMLSAG00000005216 transcript:EMLSAT00000005216 description:"maker-LSalAtl2s27639-augustus-gene-0.2")

HSP 1 Score: 194.126 bits (492), Expect = 4.824e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:    1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV
Sbjct:    1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99          
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000008513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981:36548:-1 gene:EMLSAG00000008513 transcript:EMLSAT00000008513 description:"maker-LSalAtl2s524-augustus-gene-0.17")

HSP 1 Score: 182.956 bits (463), Expect = 8.678e-60
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0
Query:    1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            A+ ALLFIAVSGEDLEWESCNPDN GEG+I LSPYPLPVVSGTSLD+KALFDLHKDLDGDVDVE+KLVKKGIVSIPIPCIESPSGLHLG CSYKLEEIV
Sbjct:    5 AVLALLFIAVSGEDLEWESCNPDNWGEGNIXLSPYPLPVVSGTSLDVKALFDLHKDLDGDVDVEIKLVKKGIVSIPIPCIESPSGLHLGXCSYKLEEIV 103          
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000002046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:31599:32602:1 gene:EMLSAG00000002046 transcript:EMLSAT00000002046 description:"maker-LSalAtl2s1371-augustus-gene-0.2")

HSP 1 Score: 121.324 bits (303), Expect = 1.587e-35
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 0
Query:    3 FALLFIAVSG-------EDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            F  L I VS        +DL +E CN DN GEG+I ++PYPLPVV GT +D+KALF L K LDGDVDV++K+VK GI+SIPIPC+E   G+ LGSC YKLEEI+
Sbjct:    7 FCALLIVVSSASSLKLKDDLGFEPCNLDNWGEGNIDVNPYPLPVVEGTQVDIKALFQLDKKLDGDVDVKIKMVKTGIISIPIPCLEIRPGVFLGSCDYKLEEII 110          
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000007327 (pep:novel supercontig:LSalAtl2s:LSalAtl2s412:163825:164621:1 gene:EMLSAG00000007327 transcript:EMLSAT00000007327 description:"maker-LSalAtl2s412-augustus-gene-1.19")

HSP 1 Score: 82.4185 bits (202), Expect = 4.425e-21
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0
Query:    1 AIFALLFIAVSGEDLE--WESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKG-IVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            A+  LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VELK+ KKG + +IPIPCIE   G  LGSC YK+ E++
Sbjct:    5 AVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELL 106          
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000008564 (pep:novel supercontig:LSalAtl2s:LSalAtl2s527:6343:7034:1 gene:EMLSAG00000008564 transcript:EMLSAT00000008564 description:"maker-LSalAtl2s527-snap-gene-0.18")

HSP 1 Score: 73.1738 bits (178), Expect = 6.357e-18
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLP 38
            AIF LLFIAVSGEDLEWESCNPDN GEG+I LSPYPLP
Sbjct:    5 AIFXLLFIAVSGEDLEWESCNPDNWGEGNIDLSPYPLP 42          
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000008563 (pep:novel supercontig:LSalAtl2s:LSalAtl2s527:44417:44846:-1 gene:EMLSAG00000008563 transcript:EMLSAT00000008563 description:"maker-LSalAtl2s527-snap-gene-0.22")

HSP 1 Score: 72.7886 bits (177), Expect = 1.458e-17
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPV 39
            AIF L FIAVSGEDLEWESCNPDN GEG+I LSPYPLPV
Sbjct:    5 AIFVLXFIAVSGEDLEWESCNPDNWGEGNIDLSPYPLPV 43          
BLAST of EMLSAG00000005216 vs. nr
Match: gi|155966306|gb|ABU41106.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 195.282 bits (495), Expect = 4.247e-62
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:    1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
            AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV
Sbjct:    5 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 103          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005216 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005216 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 16
Match NameE-valueIdentityDescription
gi|592805766|gb|GAXK01148802.1|3.868e-1034.48TSA: Calanus finmarchicus comp742106_c0_seq1 trans... [more]
gi|592805765|gb|GAXK01148803.1|6.259e-1034.12TSA: Calanus finmarchicus comp742106_c0_seq2 trans... [more]
gi|592766305|gb|GAXK01188263.1|1.311e-934.78TSA: Calanus finmarchicus comp10513_c1_seq1 transc... [more]
gi|592892529|gb|GAXK01065846.1|4.109e-932.41TSA: Calanus finmarchicus comp4881_c0_seq1 transcr... [more]
gi|592850395|gb|GAXK01107149.1|1.182e-829.09TSA: Calanus finmarchicus comp36345_c0_seq1 transc... [more]
gi|592837693|gb|GAXK01119851.1|2.541e-630.88TSA: Calanus finmarchicus comp652609_c0_seq2 trans... [more]
gi|592837694|gb|GAXK01119850.1|3.265e-630.88TSA: Calanus finmarchicus comp652609_c0_seq1 trans... [more]
gi|592778681|gb|GAXK01175887.1|9.448e-328.05TSA: Calanus finmarchicus comp2962_c0_seq1 transcr... [more]
gi|592913583|gb|GAXK01044792.1|3.839e-225.00TSA: Calanus finmarchicus comp308971_c0_seq1 trans... [more]
gi|592834757|gb|GAXK01122787.1|8.431e-141.46TSA: Calanus finmarchicus comp4667637_c0_seq1 tran... [more]

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BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000052164.824e-65100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:3... [more]
EMLSAP000000085138.678e-6091.92pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981... [more]
EMLSAP000000020461.587e-3559.62pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:3159... [more]
EMLSAP000000073274.425e-2141.18pep:novel supercontig:LSalAtl2s:LSalAtl2s412:16382... [more]
EMLSAP000000085646.357e-1889.47pep:novel supercontig:LSalAtl2s:LSalAtl2s527:6343:... [more]
EMLSAP000000085631.458e-1787.18pep:novel supercontig:LSalAtl2s:LSalAtl2s527:44417... [more]
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BLAST of EMLSAG00000005216 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005216 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005216 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966306|gb|ABU41106.1|4.247e-62100.00hypothetical protein [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000005216 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s27639supercontigLSalAtl2s27639:2..371 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s27639-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005216 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005216EMLSAT00000005216-701063Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s27639:2..371-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005216-687982 ID=EMLSAG00000005216-687982|Name=EMLSAG00000005216|organism=Lepeophtheirus salmonis|type=gene|length=370bp|location=Sequence derived from alignment at LSalAtl2s27639:2..371- (Lepeophtheirus salmonis)
GCCATCTTTGCACTTTTGTTCATTGCCGTGTCTGGAGAGGATCTGGAGTG GGAGTCCTGCAATCCCGATAACTTGGGAGAAGGAGACATTGCCCTCTCTC CTTATCCCCTTCCAGTAGTTAGTGGAACCAGTCTGGATTTGAAAGCCCTC TTTGATCTTCACAAGGACCTCGATGGAGATGTGGATGTTGAACTCAAGTT GGTCAAGAAAGGAATTGTCTCCATTCCCATCCCCTGCATTGAAGTGAGAT AACGGAATACAATTCATTGAATAGTYATAAATAAAATCTTCTCTTTTTGC TAACATATATATCTAGAGCCCTTCAGGCCTGCATTTGGGCTCTTGTTCCT ACAAACTGGAGGAGATTGTC
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