EMLSAG00000005216, EMLSAG00000005216-687982 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592805766|gb|GAXK01148802.1| (TSA: Calanus finmarchicus comp742106_c0_seq1 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 3.868e-10 Identity = 30/87 (34.48%), Postives = 56/87 (64.37%), Query Frame = 0 Query: 15 LEWESCN--PDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 LE+ C+ P+ L +++ P+P+ +++G ++ A L ++L V KLVK+ I++IPIPC++ G+++GSCSY ++EI+ Sbjct: 135 LEYGFCDGSPEPLSLDLMSVEPFPIELLTGHNITFAAQITLTEELPMGTTVHFKLVKQDIINIPIPCLDI-DGINIGSCSYDVDEIL 392
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592805765|gb|GAXK01148803.1| (TSA: Calanus finmarchicus comp742106_c0_seq2 transcribed RNA sequence) HSP 1 Score: 55.0694 bits (131), Expect = 6.259e-10 Identity = 29/85 (34.12%), Postives = 54/85 (63.53%), Query Frame = 0 Query: 15 LEWESCN--PDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEE 97 LE+ C+ P+ L +++ P+P+ +++G ++ A L ++L V KLVK+ I++IPIPC++ G+++GSCSY ++E Sbjct: 135 LEYGFCDGSPEPLSLDLMSVEPFPIELLTGHNITFAAQITLTEELPMGTTVHFKLVKQDIINIPIPCLDI-DGINIGSCSYDVDE 386
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592766305|gb|GAXK01188263.1| (TSA: Calanus finmarchicus comp10513_c1_seq1 transcribed RNA sequence) HSP 1 Score: 56.6102 bits (135), Expect = 1.311e-9 Identity = 24/69 (34.78%), Postives = 46/69 (66.67%), Query Frame = 0 Query: 31 ALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 + P+P+P+V+GT LD+ LF L++ V++ + +G+++IPIPC+E + LGSC Y +++++ Sbjct: 869 TIEPFPIPLVTGTVLDVNVLFQLNEMCPAGTTVKMAMELQGLINIPIPCLEV-DDIALGSCEYAIDDLL 1072
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592892529|gb|GAXK01065846.1| (TSA: Calanus finmarchicus comp4881_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.9138 bits (128), Expect = 4.109e-9 Identity = 35/108 (32.41%), Postives = 60/108 (55.56%), Query Frame = 0 Query: 2 IFALLFIAVSG------EDLEWESCN----PDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 FAL +A++ + LE+ C+ P +L I++ P+P+ V +G S+ L L++ + V LK+ K+G++ IP+PC+E GLHLGSC Y + ++ Sbjct: 71 FFALACVALASARNIKIDQLEYGFCDGSAEPASLDS--ISVEPFPIVVATGESITLSVQLTLNEPVPVGAQVSLKIKKEGLIDIPLPCLEI-EGLHLGSCDYDADTLL 385
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592850395|gb|GAXK01107149.1| (TSA: Calanus finmarchicus comp36345_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.182e-8 Identity = 32/110 (29.09%), Postives = 56/110 (50.91%), Query Frame = 0 Query: 3 FALLFIAVSGEDLEWE-------------SCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 LL A S D+ E S +P+ + +P+P+ + +G + L A L ++L V++K+VK+G+++IP PC+E G +GSCSY ++I+ Sbjct: 41 LTLLVAAASARDIRLELLAPPKEVEFGFCSGSPEPASLDYLTATPFPIEMATGNVITLAAQITLLEELPVGTTVDIKIVKEGLINIPFPCVEV-EGQMVGSCSYNGDDIL 367
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592837693|gb|GAXK01119851.1| (TSA: Calanus finmarchicus comp652609_c0_seq2 transcribed RNA sequence) HSP 1 Score: 46.9802 bits (110), Expect = 2.541e-6 Identity = 21/68 (30.88%), Postives = 37/68 (54.41%), Query Frame = 0 Query: 32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 PYP+ + + ++ + L K + + +E+++ K GI+ IP PC E G H GSC+Y +E + Sbjct: 486 FEPYPIQIKTEGVEAVRTMIHLLKSIPEKISIEVEITKLGIIDIPTPCFEW-EGYHFGSCTYDGDEFL 686 HSP 2 Score: 30.4166 bits (67), Expect = 8.562e-1 Identity = 12/33 (36.36%), Postives = 22/33 (66.67%), Query Frame = 0 Query: 67 LVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 +V++G++ + IPC+E +GSC+Y EE + Sbjct: 1059 IVREGLIDMTIPCLEWEDWGLVGSCTYDAEEFL 1157
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592837694|gb|GAXK01119850.1| (TSA: Calanus finmarchicus comp652609_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 3.265e-6 Identity = 21/68 (30.88%), Postives = 37/68 (54.41%), Query Frame = 0 Query: 32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 PYP+ + + ++ + L K + + +E+++ K GI+ IP PC E G H GSC+Y +E + Sbjct: 486 FEPYPIQIKTEGVEAVRTMIHLLKSIPEKISIEVEITKLGIIDIPTPCFEW-EGYHFGSCTYDGDEFL 686 HSP 2 Score: 39.6614 bits (91), Expect = 7.018e-4 Identity = 20/71 (28.17%), Postives = 38/71 (53.52%), Query Frame = 0 Query: 29 DIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 D+ + P+P+ + + ++ + DL + + +VK+GI+ I IPC+E +GSC+Y EE + Sbjct: 1059 DLDIYPFPMSMCLCKTNYIRIVADLLVTIPLGATISFTIVKEGIIPITIPCLEWEDWGLVGSCTYDAEEFL 1271
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592778681|gb|GAXK01175887.1| (TSA: Calanus finmarchicus comp2962_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 9.448e-3 Identity = 23/82 (28.05%), Postives = 44/82 (53.66%), Query Frame = 0 Query: 18 ESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 + N D L +I++ P+PL + +G + L L++ + V+LK+ ++GI+ I +H+GSCSY +E++ Sbjct: 186 DGANQDVLSLDNISVEPFPLVINTGAEITLNVQITLNEPVPAGATVDLKIKREGIIPI-PIPCLPIGDIHIGSCSYSGDELL 428
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592913583|gb|GAXK01044792.1| (TSA: Calanus finmarchicus comp308971_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 3.839e-2 Identity = 16/64 (25.00%), Postives = 36/64 (56.25%), Query Frame = 0 Query: 32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKK-GIVSIPIPCIESPSGLHLGSCSYK 94 + PYP+ ++ + A +L +++ ++++ K+ G +S+ +PCI+S +GSC Y+ Sbjct: 1970 IEPYPVLFEPNETVSISAWMNLFENITAGSQFKVRITKEDGPISVLMPCIDSNEWGLIGSCDYE 2161
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Match: gi|592834757|gb|GAXK01122787.1| (TSA: Calanus finmarchicus comp4667637_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 8.431e-1 Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 0 Query: 32 LSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGI 72 LS YPL +V T+ D+ FD+ K L G+V L KK + Sbjct: 1013 LSGYPLTLVPETTRDITEAFDILKQLYGNVSRVLVFQKKKL 1135
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000005216 (pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:371:-1 gene:EMLSAG00000005216 transcript:EMLSAT00000005216 description:"maker-LSalAtl2s27639-augustus-gene-0.2") HSP 1 Score: 194.126 bits (492), Expect = 4.824e-65 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 Query: 1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV Sbjct: 1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000008513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981:36548:-1 gene:EMLSAG00000008513 transcript:EMLSAT00000008513 description:"maker-LSalAtl2s524-augustus-gene-0.17") HSP 1 Score: 182.956 bits (463), Expect = 8.678e-60 Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0 Query: 1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 A+ ALLFIAVSGEDLEWESCNPDN GEG+I LSPYPLPVVSGTSLD+KALFDLHKDLDGDVDVE+KLVKKGIVSIPIPCIESPSGLHLG CSYKLEEIV Sbjct: 5 AVLALLFIAVSGEDLEWESCNPDNWGEGNIXLSPYPLPVVSGTSLDVKALFDLHKDLDGDVDVEIKLVKKGIVSIPIPCIESPSGLHLGXCSYKLEEIV 103
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000002046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:31599:32602:1 gene:EMLSAG00000002046 transcript:EMLSAT00000002046 description:"maker-LSalAtl2s1371-augustus-gene-0.2") HSP 1 Score: 121.324 bits (303), Expect = 1.587e-35 Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 0 Query: 3 FALLFIAVSG-------EDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 F L I VS +DL +E CN DN GEG+I ++PYPLPVV GT +D+KALF L K LDGDVDV++K+VK GI+SIPIPC+E G+ LGSC YKLEEI+ Sbjct: 7 FCALLIVVSSASSLKLKDDLGFEPCNLDNWGEGNIDVNPYPLPVVEGTQVDIKALFQLDKKLDGDVDVKIKMVKTGIISIPIPCLEIRPGVFLGSCDYKLEEII 110
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000007327 (pep:novel supercontig:LSalAtl2s:LSalAtl2s412:163825:164621:1 gene:EMLSAG00000007327 transcript:EMLSAT00000007327 description:"maker-LSalAtl2s412-augustus-gene-1.19") HSP 1 Score: 82.4185 bits (202), Expect = 4.425e-21 Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0 Query: 1 AIFALLFIAVSGEDLE--WESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKG-IVSIPIPCIESPSGLHLGSCSYKLEEIV 99 A+ LL S +E W++C D+ +PYP+ +VSG L K + ++ K++DGD++VELK+ KKG + +IPIPCIE G LGSC YK+ E++ Sbjct: 5 AVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELL 106
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000008564 (pep:novel supercontig:LSalAtl2s:LSalAtl2s527:6343:7034:1 gene:EMLSAG00000008564 transcript:EMLSAT00000008564 description:"maker-LSalAtl2s527-snap-gene-0.18") HSP 1 Score: 73.1738 bits (178), Expect = 6.357e-18 Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 Query: 1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLP 38 AIF LLFIAVSGEDLEWESCNPDN GEG+I LSPYPLP Sbjct: 5 AIFXLLFIAVSGEDLEWESCNPDNWGEGNIDLSPYPLP 42
BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Match: EMLSAP00000008563 (pep:novel supercontig:LSalAtl2s:LSalAtl2s527:44417:44846:-1 gene:EMLSAG00000008563 transcript:EMLSAT00000008563 description:"maker-LSalAtl2s527-snap-gene-0.22") HSP 1 Score: 72.7886 bits (177), Expect = 1.458e-17 Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 Query: 1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPV 39 AIF L FIAVSGEDLEWESCNPDN GEG+I LSPYPLPV Sbjct: 5 AIFVLXFIAVSGEDLEWESCNPDNWGEGNIDLSPYPLPV 43
BLAST of EMLSAG00000005216 vs. nr
Match: gi|155966306|gb|ABU41106.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 195.282 bits (495), Expect = 4.247e-62 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 Query: 1 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 99 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV Sbjct: 5 AIFALLFIAVSGEDLEWESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKGIVSIPIPCIESPSGLHLGSCSYKLEEIV 103 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005216 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005216 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 16
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BLAST of EMLSAG00000005216 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 6
BLAST of EMLSAG00000005216 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005216 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005216 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000005216 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s27639:2..371- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005216-687982 ID=EMLSAG00000005216-687982|Name=EMLSAG00000005216|organism=Lepeophtheirus salmonis|type=gene|length=370bp|location=Sequence derived from alignment at LSalAtl2s27639:2..371- (Lepeophtheirus salmonis)back to top Add to Basket
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