EMLSAG00000005225, EMLSAG00000005225-687991 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005225 vs. C. finmarchicus
Match: gi|592820902|gb|GAXK01133666.1| (TSA: Calanus finmarchicus comp738690_c0_seq3 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 7.640e-1 Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 0
Query: 86 PRRCMRYFCHEGRLIWTFNWQSRNA 110
PR C++YF G I +FN+ NA
Sbjct: 91 PRGCLQYFTESGGTIQSFNYDGVNA 165
BLAST of EMLSAG00000005225 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5") HSP 1 Score: 260.381 bits (664), Expect = 3.051e-90 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGTRCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGTRCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN
Sbjct: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGTRCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
BLAST of EMLSAG00000005225 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9") HSP 1 Score: 256.914 bits (655), Expect = 6.491e-89 Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0
Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGTRCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYY RYG RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN
Sbjct: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
BLAST of EMLSAG00000005225 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4") HSP 1 Score: 87.0409 bits (214), Expect = 1.055e-22 Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGT--RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQ 106
MK+ALFLLALSIL VN A K K C +N ++Y G CC +M C SNG Y YG +C C DP+ + I GQYGR + C+RYFC GR + T +++
Sbjct: 1 MKVALFLLALSILVVNGA-SKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFK 107
BLAST of EMLSAG00000005225 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2") HSP 1 Score: 82.8037 bits (203), Expect = 4.811e-21 Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYG--TRCNCCRDPYYSL-SLIRSGQYGRPRRCMRYFCHEGRLIWTFNW 105
MK + L A DA K C++N + Y G+++ +F+ CC+QM C G +Y N G +C CCRDPY S SLI++G YG+ + R+FC +GRL+ TF++
Sbjct: 2 MKFVMLLSLAMAXAFVDA--KPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107
BLAST of EMLSAG00000005225 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9") HSP 1 Score: 66.2402 bits (160), Expect = 6.932e-15 Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0
Query: 5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVY-YNRYGTR--CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109
+ LL L+ +A ++ C FN + Y G+++ +F CC QM C G N G C CCRDPY LI++G YGR + R+FC +G+L+ TF++ N
Sbjct: 4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005225 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005225 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000005225 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000005225 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005225 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005225 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000005225 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s276:3617..4061- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005225-687991 ID=EMLSAG00000005225-687991|Name=EMLSAG00000005225|organism=Lepeophtheirus salmonis|type=gene|length=445bp|location=Sequence derived from alignment at LSalAtl2s276:3617..4061- (Lepeophtheirus salmonis)back to top Add to Basket
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