EMLSAG00000005226, EMLSAG00000005226-687992 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005226
Unique NameEMLSAG00000005226-687992
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Match: gi|592818421|gb|GAXK01136147.1| (TSA: Calanus finmarchicus comp1850850_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.068e+0
Identity = 16/49 (32.65%), Postives = 22/49 (44.90%), Query Frame = 0 
Query:   24 CNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKK--CGXCI 70
            C +NG +Y  G      P CC+ M+C+  G       G  +K   G CI
Sbjct: 1422 CIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQMIGNTRKPASGCCI 1568
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Match: gi|592919519|gb|GAXK01038856.1| (TSA: Calanus finmarchicus comp672623_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.044e+0
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:   24 CNYNGKNYRRGQTALMLPFCCTKMVCSS 51
            CNY GK++R+G+  + +P  C +MVC  
Sbjct:  328 CNYKGKSHRKGEK-IAIPEKCGEMVCEE 408
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Match: gi|592859093|gb|GAXK01098469.1| (TSA: Calanus finmarchicus comp641016_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.770e+0
Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 0 
Query:    6 FLLALSIL-----VVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPT 59
            FLL+  IL     VVNG S + +CN  G     G    +L F    + C ++G F  PT
Sbjct: 1964 FLLSKLILANVTSVVNGESIIYVCNQTGHVVDTGGRKRVLGF---SVECGNDGTFKEPT 2131
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Match: gi|592859094|gb|GAXK01098468.1| (TSA: Calanus finmarchicus comp641016_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.770e+0
Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 0 
Query:    6 FLLALSIL-----VVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPT 59
            FLL+  IL     VVNG S + +CN  G     G    +L F    + C ++G F  PT
Sbjct: 1976 FLLSKLILANVTSVVNGESIIYVCNQTGHVVDTGGRKRVLGF---SVECGNDGTFKEPT 2143
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Match: gi|592859095|gb|GAXK01098467.1| (TSA: Calanus finmarchicus comp641016_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.771e+0
Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 0 
Query:    6 FLLALSIL-----VVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPT 59
            FLL+  IL     VVNG S + +CN  G     G    +L F    + C ++G F  PT
Sbjct: 1964 FLLSKLILANVTSVVNGESIIYVCNQTGHVVDTGGRKRVLGF---SVECGNDGTFKEPT 2131
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Match: gi|592859096|gb|GAXK01098466.1| (TSA: Calanus finmarchicus comp641016_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.771e+0
Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 0 
Query:    6 FLLALSIL-----VVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPT 59
            FLL+  IL     VVNG S + +CN  G     G    +L F    + C ++G F  PT
Sbjct: 1976 FLLSKLILANVTSVVNGESIIYVCNQTGHVVDTGGRKRVLGF---SVECGNDGTFKEPT 2143
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BLAST of EMLSAG00000005226 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4")

HSP 1 Score: 218.779 bits (556), Expect = 1.865e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MKVALFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFKR 108
            MKVALFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFKR
Sbjct:    1 MKVALFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFKR 108
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BLAST of EMLSAG00000005226 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9")

HSP 1 Score: 87.4261 bits (215), Expect = 5.455e-23
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0 
Query:    1 MKVALFLLALSILVVNGA-SKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFK 107
            MK+ALFLLALSIL VN A  K K C +N ++Y  G        CC +M C SNG   Y  YG   +C  C DP+   + I  GQYGR + C+RYFC  GR + T +++
Sbjct:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGA--RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQ 106
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BLAST of EMLSAG00000005226 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5")

HSP 1 Score: 87.0409 bits (214), Expect = 8.973e-23
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0 
Query:    1 MKVALFLLALSILVVNGA-SKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFK 107
            MK+ALFLLALSIL VN A  K K C +N ++Y  G        CC +M C SNG   Y  YG   +C  C DP+   + I  GQYGR + C+RYFC  GR + T +++
Sbjct:    1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGT--RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQ 106
[Close]
BLAST of EMLSAG00000005226 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9")

HSP 1 Score: 68.9366 bits (167), Expect = 4.771e-16
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0 
Query:    3 VALFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYP-TYGKGKKCGXCIDPFN-KNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFKR 108
            V L  LA++   V   S    C +NG+ Y+ G      P CCT+M+CS  G  S     GK K CG C DP+N K+  I +G YGR K   R+FC  G+ V T  F +
Sbjct:    4 VILLCLAMAATFVEAQSTC--CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMK 109
[Close]
BLAST of EMLSAG00000005226 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2")

HSP 1 Score: 66.2402 bits (160), Expect = 5.081e-15
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 0 
Query:    5 LFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNK-NNFIFDGQYGRLKGCLRYFCSHGRHVLTTHF 106
            + LL+L++      +K   C+YNG+ Y+ G        CC +M CS  G       GK KKCG C DP+N  ++ I +G YG+ K   R+FC  GR V T  F
Sbjct:    5 VMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592818421|gb|GAXK01136147.1|1.068e+032.65TSA: Calanus finmarchicus comp1850850_c0_seq1 tran... [more]
gi|592919519|gb|GAXK01038856.1|2.044e+042.86TSA: Calanus finmarchicus comp672623_c0_seq1 trans... [more]
gi|592859093|gb|GAXK01098469.1|3.770e+035.59TSA: Calanus finmarchicus comp641016_c0_seq4 trans... [more]
gi|592859094|gb|GAXK01098468.1|3.770e+035.59TSA: Calanus finmarchicus comp641016_c0_seq3 trans... [more]
gi|592859095|gb|GAXK01098467.1|3.771e+035.59TSA: Calanus finmarchicus comp641016_c0_seq2 trans... [more]
gi|592859096|gb|GAXK01098466.1|3.771e+035.59TSA: Calanus finmarchicus comp641016_c0_seq1 trans... [more]
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BLAST of EMLSAG00000005226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000052261.865e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:... [more]
EMLSAP000000013505.455e-2345.37pep:novel supercontig:LSalAtl2s:LSalAtl2s122:13129... [more]
EMLSAP000000052258.973e-2345.37pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:... [more]
EMLSAP000000013444.771e-1639.81pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:1191... [more]
EMLSAP000000083715.081e-1537.86pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508... [more]
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BLAST of EMLSAG00000005226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s276supercontigLSalAtl2s276:5888..6502 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s276-augustus-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005226 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005226EMLSAT00000005226-701073Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s276:5888..6502+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005226-687992 ID=EMLSAG00000005226-687992|Name=EMLSAG00000005226|organism=Lepeophtheirus salmonis|type=gene|length=615bp|location=Sequence derived from alignment at LSalAtl2s276:5888..6502+ (Lepeophtheirus salmonis)
ACATTCTAAAAAGAGATTAAAGGTTTGTTCCTTTACTTAAAGATAAATTA
CATTTTTTAAGTGAAATGCATGTATATACCATTTATATTTACAGATGAAA
GTAGCCTTATTTCTCTTGGCTCTGTCCATTTTGGTAGTAAATGGTGCTTC
CAAAGTTAAGCTATGCAACTATAACGGAAAAAATTATCGTCGAGGACAAA
CTGCCTTAATGTTACCCTTCTGTTGTACTAAAATGGTGTGTTCGTCAAAC
GGGTACTTTAGGTTAGTACTTTCATTTTTTGCATTCATGTTTATGTTAAT
GAACTTTGTTCTTATTAGCTACCCTACTTATGGAAAAGGCAAAAAATGCG
GCTGMTGTATCGATCCATTCAATAAAAACAACTTTATTTTTGATGGACAA
TATGGACGATTGAAAGGCTGCTTAAGATATTTTTGTAGCCATGGAAGACA
TGTTTTGACCACTCATTTTAAGCGTTAATATTTTTTCATGGCTCACATTT
TTAACAAATATATACTGTTTAAAATAAAACAACACTTTGCATCACTGAAA
TAAATTCTTGCTGATCAAATGTCCTTAGGGTACGGCTATATTTATATTAT
GATATTAGTTACGAG
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