EMLSAG00000005968, EMLSAG00000005968-688734 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005968 vs. C. finmarchicus
Match: gi|592915657|gb|GAXK01042718.1| (TSA: Calanus finmarchicus comp2348951_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.323e+0 Identity = 19/43 (44.19%), Postives = 22/43 (51.16%), Query Frame = 0
Query: 156 PHNLATDAGTSESCTTAFDC--GYSVLQGIWAPCYGGQCSNVI 196
PH L AG S S T F C GY+++ I C GGQ S I
Sbjct: 216 PHGLIDGAGDSSSWTGTFSCLPGYTLVGNIALKCRGGQWSGDI 344
BLAST of EMLSAG00000005968 vs. C. finmarchicus
Match: gi|592909072|gb|GAXK01049303.1| (TSA: Calanus finmarchicus comp2777597_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 8.184e+0 Identity = 16/51 (31.37%), Postives = 27/51 (52.94%), Query Frame = 0
Query: 13 LYLLFVTCVASQSQILECNTEKDCPAYNSC----FYNVFSGYYCVGPKYSE 59
L L ++C+ S + +L E C ++SC Y + SG+ C G +YS+
Sbjct: 55 LILFHISCLGSSTHLLHPIGEH-CKWFDSCDISARYQLMSGFSCSGKEYSD 204
BLAST of EMLSAG00000005968 vs. L. salmonis peptides
Match: EMLSAP00000005968 (pep:novel supercontig:LSalAtl2s:LSalAtl2s321:89695:114791:1 gene:EMLSAG00000005968 transcript:EMLSAT00000005968 description:"maker-LSalAtl2s321-augustus-gene-1.27") HSP 1 Score: 412.149 bits (1058), Expect = 8.482e-148 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MTSLQELTMRAFLYLLFVTCVASQSQILECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ 197
MTSLQELTMRAFLYLLFVTCVASQSQILECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ
Sbjct: 1 MTSLQELTMRAFLYLLFVTCVASQSQILECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ 197
BLAST of EMLSAG00000005968 vs. L. salmonis peptides
Match: EMLSAP00000007800 (pep:novel supercontig:LSalAtl2s:LSalAtl2s457:455515:463209:1 gene:EMLSAG00000007800 transcript:EMLSAT00000007800 description:"maker-LSalAtl2s457-augustus-gene-4.10") HSP 1 Score: 104.375 bits (259), Expect = 2.644e-27 Identity = 54/168 (32.14%), Postives = 80/168 (47.62%), Query Frame = 0
Query: 26 QILECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCS 193
++ C+ ++DCP Y+ C ++ F C ++ DC G VFPNH +C+++D K + +S C +T + YRC A+ N C+ YD G + CP FRC FKDG +N+C P + D +C DC +S L W C QCS
Sbjct: 62 RLPPCSVDEDCPKYHICIFSEFGKSECKIAGLTDFDCGVKGYDGNVFPNHTVCIEQDSKTNHLTHPDISVFHCVET----GKGYRCANAFGNTCSDMYDAHGRILMRKTCPSNFRCSLKRFKDGYENVCLPQYVEHDG----NCNKDSDCAFSTLTFRWIECIDHQCS 221
BLAST of EMLSAG00000005968 vs. L. salmonis peptides
Match: EMLSAP00000012801 (pep:novel supercontig:LSalAtl2s:LSalAtl2s974:12731:14770:1 gene:EMLSAG00000012801 transcript:EMLSAT00000012801 description:"maker-LSalAtl2s974-augustus-gene-0.5") HSP 1 Score: 98.9821 bits (245), Expect = 1.375e-25 Identity = 54/170 (31.76%), Postives = 80/170 (47.06%), Query Frame = 0
Query: 23 SQSQILECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQC 192
S+S+I C T+ DCP Y C +C+ S + C + G++F NH IC++ + S+ S +RC + Y CG +Y N C +D G +K + CP F C+ +FKDG +C P + D G +C FDCG S + W C G+C
Sbjct: 16 SESKI-PCKTDLDCPKYGYCHVLPPLVSHCIPTVLSNLKCVSVAPNGVIFANHTICLELGKTLKPDSNELYSTERCILVETPRGRNYTCGLSYYNPCPDTFDNSGTLLKTEDCPNHFNCDEVQFKDGYLRVCRPDLMELD-GLDVNCKNNFDCGXSNIYLAWRTCDRGKC 183
BLAST of EMLSAG00000005968 vs. L. salmonis peptides
Match: EMLSAP00000007799 (pep:novel supercontig:LSalAtl2s:LSalAtl2s457:449839:452961:-1 gene:EMLSAG00000007799 transcript:EMLSAT00000007799 description:"maker-LSalAtl2s457-augustus-gene-4.12") HSP 1 Score: 88.1965 bits (217), Expect = 7.040e-22 Identity = 63/168 (37.50%), Postives = 85/168 (50.60%), Query Frame = 0
Query: 30 CNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ 197
C EKDC SC +++FS C+ P+ V C G N G P+H+IC+ + +K++ L+ RCYKTK +++C AY N C Y T +K+ CP F C EFK+GK +C P G C+ FDCGYS L WA C G +C IQ
Sbjct: 8 CRGEKDCLKTYSCSFSLFSSSKCIPPRQRNVFC-GKNRNGQTVPDHEICIQDQVKDDNLKGPGLAVNRCYKTK----GSFKCQNAYLNYCVTDY-TMKQPIKN-ICPPNFNCVNREFKNGKAKVCIPSKNFQRFG---KCSNDFDCGYSTLLNNWALCLGSKCDGPIQ 165
BLAST of EMLSAG00000005968 vs. L. salmonis peptides
Match: EMLSAP00000003684 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1:1001708:1005062:-1 gene:EMLSAG00000003684 transcript:EMLSAT00000003684 description:"maker-LSalAtl2s1-augustus-gene-10.12") HSP 1 Score: 72.4034 bits (176), Expect = 2.469e-16 Identity = 47/187 (25.13%), Postives = 74/187 (39.57%), Query Frame = 0
Query: 12 FLYLLFVTCVASQSQI-LECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ 197
+YLL + S I + C +EKDCP +CF+++ + C PK + C G + G P+H++C+ + +K + D L+ RCY + C EFK+G+ +C P + G C F CG+ +L WA C G C I+
Sbjct: 3 IVYLLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNPPKERNISC-GKDIDGKTVPDHEVCIQDQVKTDNLKDRSLAVYRCYNSS--------------------------------------CVNREFKNGRAKVCIPRMFSGGYG---GCINGFSCGFFLLSQTWATCVNGDCDGFIR 147
BLAST of EMLSAG00000005968 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold42_size484952-snap-gene-1.13 (protein:Tk06357 transcript:maker-scaffold42_size484952-snap-gene-1.13-mRNA-1 annotation:"---NA---") HSP 1 Score: 75.0998 bits (183), Expect = 7.291e-17 Identity = 53/180 (29.44%), Postives = 84/180 (46.67%), Query Frame = 0
Query: 30 CNTEKDCPAYNSCFYNVFSGYYCV-----GPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFV--KDDQCPYKFRCEAAEFKDGKK-NICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCY----GGQCSNVIQ 197
C ++CP Y+ CF++ F+ +C +S C G + + +P H C + +E G + S RCY Y C AY CT YD G + ++ CP +F C+ ++ G++ ++C P+ AT + T C AFDCG+SV + W+ C G C V+Q
Sbjct: 76 CYKPEECPDYHYCFFSAFTPNFCTTNLKQKAFHSTEYCLGKDQEDNNYPVHSRCQELHSEERGVTTDE-SPMRCY-----SELGYTCASAYHMPCTQNYDEDGKAIAGEEKSCPKEFSCKKQTYESGEELDVCLPNEPATRSST---CKNAFDCGFSVEEQDWSLCQSGIDSGSCLRVLQ 246
BLAST of EMLSAG00000005968 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold42_size484952-snap-gene-1.12 (protein:Tk06359 transcript:maker-scaffold42_size484952-snap-gene-1.12-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 68.5514 bits (166), Expect = 5.643e-14 Identity = 50/178 (28.09%), Postives = 72/178 (40.45%), Query Frame = 0
Query: 29 ECNTEKDCPAYNSCFYNVFSGYYCVGPKYSE--VDC------HGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKN-ICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ 197
EC DCP Y+ CF + F G C Y DC N + P H C + D +E G ++ S+ +C + Y C AY NAC PQ +++ CP C +KD + +C P D C A+DC +S L+ W+ C C V++
Sbjct: 116 ECEEASDCPQYHFCFASAFLGTRCDTFMYKRNFTDCIYCKTFTDANDESTAMPAHDFCTEIDAEERG-TEADESSHKC-----NQEAGYCCSTAYYNACDPQ--------EEEACPTNMECVEQAYKDAESVFVCKPQEREFDYLNEIPCEKAYDCPWSELEASWSLCRNNVCQVVLE 279
BLAST of EMLSAG00000005968 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold42_size484952-snap-gene-1.14 (protein:Tk06360 transcript:maker-scaffold42_size484952-snap-gene-1.14-mRNA-1 annotation:"3 -5 exonuclease") HSP 1 Score: 60.4622 bits (145), Expect = 2.879e-11 Identity = 42/135 (31.11%), Postives = 59/135 (43.70%), Query Frame = 0
Query: 67 SQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVK--DDQCPYKFRCEAAEFKDGK-KNIC---NPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNV 195
++G FP+H C D E S RC+ Y C AY CTP +D G ++ ++ CP F C+ E+ +G + +C P D+G C DCGYS +G W C GQC+ V
Sbjct: 100 AEGKEFPSHDHCQSVDA-ENRIIKPDESTHRCF-----AELGYICKDAYYMPCTPNHDPNGQAIEGEEEACPGNFTCQEFEYTEGGLRKVCIPDQPDATRFDSGDDVQCQRGSDCGYSEEEGAWTTCDNGQCATV 228 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005968 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005968 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000005968 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000005968 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005968 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005968 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000005968 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s321:89695..114791+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005968-688734 ID=EMLSAG00000005968-688734|Name=EMLSAG00000005968|organism=Lepeophtheirus salmonis|type=gene|length=25097bp|location=Sequence derived from alignment at LSalAtl2s321:89695..114791+ (Lepeophtheirus salmonis)back to top Add to Basket
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