EMLSAG00000006010, EMLSAG00000006010-688776 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006010 vs. GO
Match: - (symbol:rpl27 "ribosomal protein L27" species:7955 "Danio rerio" [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 Pfam:PF00467 ZFIN:ZDB-GENE-030131-4343 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG2163 HOGENOM:HOG000210138 KO:K02901 PANTHER:PTHR10497 OMA:KIYKPGK GeneTree:ENSGT00390000010721 CTD:6155 HOVERGEN:HBG050005 OrthoDB:EOG7J181Z TreeFam:TF314648 EMBL:BC045965 RefSeq:NP_956018.1 RefSeq:XP_005163985.1 UniGene:Dr.75716 ProteinModelPortal:Q7ZV82 STRING:7955.ENSDARP00000018737 PRIDE:Q7ZV82 Ensembl:ENSDART00000020311 Ensembl:ENSDART00000140518 GeneID:325618 KEGG:dre:325618 InParanoid:Q7ZV82 NextBio:20809388 PRO:PR:Q7ZV82 Bgee:Q7ZV82 Uniprot:Q7ZV82) HSP 1 Score: 40.817 bits (94), Expect = 2.302e-4 Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+ M+ G++VM L+G +AG KA IV+ D+ + P Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRP 37
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592788505|gb|GAXK01166063.1| (TSA: Calanus finmarchicus comp166_c0_seq2 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 6.082e-7 Identity = 18/37 (48.65%), Postives = 28/37 (75.68%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+IM++G++V+ L G +AG KA IV+P+DE + P Sbjct: 29 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKP 139
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592788506|gb|GAXK01166062.1| (TSA: Calanus finmarchicus comp166_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 6.909e-7 Identity = 18/37 (48.65%), Postives = 28/37 (75.68%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+IM++G++V+ L G +AG KA IV+P+DE + P Sbjct: 29 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKP 139
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592815948|gb|GAXK01138620.1| (TSA: Calanus finmarchicus comp7628178_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 6.643e-4 Identity = 14/36 (38.89%), Postives = 25/36 (69.44%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGEN 82 MG+ +R+G++V+ L+G +AG KA +V+ D+ E Sbjct: 35 MGKFIRAGKVVIVLAGRYAGKKAIVVKTFDDGTKER 142
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592781273|gb|GAXK01173295.1| (TSA: Calanus finmarchicus comp2383511_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 8.796e-4 Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGE 81 MG I++SG++V+ LSG +AG KA +V+ DE N E Sbjct: 362 MG-IVKSGKVVVLLSGRYAGRKAIVVKTYDEGNKE 463
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592818579|gb|GAXK01135989.1| (TSA: Calanus finmarchicus comp2851050_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 2.551e-3 Identity = 16/41 (39.02%), Postives = 27/41 (65.85%), Query Frame = 0 Query: 45 NIMGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENPPD 85 +IMG+ +++G++V+ L+G +AG K IVR ENG + Sbjct: 409 DIMGKFLKTGKVVVILAGRYAGRKGVIVRTV--ENGSEGKE 525
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592951042|gb|GAXK01007511.1| (TSA: Calanus finmarchicus comp3153516_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 4.090e-3 Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = 0 Query: 48 GRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENPPDVFSSLV 91 G+ ++ G++V+ L G +AG KA IVR D+E FS V Sbjct: 3 GKFLKPGKVVIILQGRYAGRKAVIVRTYDDEKRTFGDRKFSGAV 134
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592769344|gb|GAXK01185224.1| (TSA: Calanus finmarchicus comp3942177_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 4.143e-3 Identity = 16/38 (42.11%), Postives = 26/38 (68.42%), Query Frame = 0 Query: 41 TAH-GNIMGRIMRSGRIVMALSGHFAGCKAXIVRPTDE 77 TAH MGR ++ G++V+ L+G +AG KA +V+ +E Sbjct: 4 TAHPARTMGRFIKPGKVVIILNGRYAGRKAVVVKVYEE 117
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592943534|gb|GAXK01015019.1| (TSA: Calanus finmarchicus comp1658729_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.013e-2 Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDE 77 MG+I+++G++V+ LSG AG KA +VR D+ Sbjct: 423 MGKIIKTGKVVILLSGR*AGKKAVVVRANDD 515
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592838926|gb|GAXK01118618.1| (TSA: Calanus finmarchicus comp5438268_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 4.232e-1 Identity = 12/39 (30.77%), Postives = 22/39 (56.41%), Query Frame = 0 Query: 43 HGNIMGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGE 81 H N++ +M+ +I++ S H CKA + + E NG+ Sbjct: 293 HQNLVKTLMQKSKIILNFSYHSPPCKAQATQQSLERNGK 409
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Match: gi|592846417|gb|GAXK01111127.1| (TSA: Calanus finmarchicus comp697511_c1_seq1 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 6.151e+0 Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 0 Query: 11 LICLVYKDILNICSSTDKNNLLMLFLSPPRTAHG 44 LIC +I +I ++ L+++ LSPP T+HG Sbjct: 831 LIC----NIFHIYQHSNNAELILILLSPPNTSHG 920
BLAST of EMLSAG00000006010 vs. L. salmonis peptides
Match: EMLSAP00000006010 (pep:novel supercontig:LSalAtl2s:LSalAtl2s326:412759:435794:-1 gene:EMLSAG00000006010 transcript:EMLSAT00000006010 description:"snap_masked-LSalAtl2s326-processed-gene-4.1") HSP 1 Score: 201.06 bits (510), Expect = 6.916e-68 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 Query: 1 MSLWPPTSAKLICLVYKDILNICSSTDKNNLLMLFLSPPRTAHGNIMGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENPPDVFSSLVRTVIYLT 98 MSLWPPTSAKLICLVYKDILNICSSTDKNNLLMLFLSPPRTAHGNIMGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENPPDVFSSLVRTVIYLT Sbjct: 1 MSLWPPTSAKLICLVYKDILNICSSTDKNNLLMLFLSPPRTAHGNIMGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENPPDVFSSLVRTVIYLT 98
BLAST of EMLSAG00000006010 vs. L. salmonis peptides
Match: EMLSAP00000005005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s260:403367:403765:1 gene:EMLSAG00000005005 transcript:EMLSAT00000005005 description:"augustus_masked-LSalAtl2s260-processed-gene-4.5") HSP 1 Score: 56.6102 bits (135), Expect = 1.483e-11 Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 Query: 51 MRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MRSGRIV+ LSG FAG KA IVRPTDE NGE P Sbjct: 1 MRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKP 33
BLAST of EMLSAG00000006010 vs. Select Arthropod Genomes
Match: EFX78542.1 (hypothetical protein DAPPUDRAFT_231081 [Daphnia pulex]) HSP 1 Score: 46.595 bits (109), Expect = 5.762e-7 Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+IM+SG++V+ L G FAG KA IV+ DE E P Sbjct: 1 MGKIMKSGKVVLVLGGRFAGRKAIIVKNYDEGTSEKP 37
BLAST of EMLSAG00000006010 vs. nr
Match: gi|225714122|gb|ACO12907.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis] >gi|290561357|gb|ADD38079.1| 60S ribosomal protein L27 [Lepeophtheirus salmonis]) HSP 1 Score: 63.1586 bits (152), Expect = 1.110e-10 Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+IMRSGRIV+ LSG FAG KA IVRPTDE NGE P Sbjct: 1 MGKIMRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKP 37
BLAST of EMLSAG00000006010 vs. nr
Match: gi|225711028|gb|ACO11360.1| (60S ribosomal protein L27 [Caligus rogercresseyi]) HSP 1 Score: 58.9214 bits (141), Expect = 5.527e-9 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+IM+SG++V+ LSG +AG KA IVRPTDE NGE P Sbjct: 1 MGKIMKSGKVVVVLSGRYAGRKAVIVRPTDEGNGEKP 37
BLAST of EMLSAG00000006010 vs. nr
Match: gi|225718080|gb|ACO14886.1| (60S ribosomal protein L27 [Caligus clemensi]) HSP 1 Score: 58.5362 bits (140), Expect = 7.381e-9 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MG+IM+SG++V+ LSG +AG KA IVRPTDE NGE P Sbjct: 1 MGKIMKSGKVVVVLSGRYAGRKAVIVRPTDEGNGEKP 37
BLAST of EMLSAG00000006010 vs. nr
Match: gi|290462955|gb|ADD24525.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis]) HSP 1 Score: 56.6102 bits (135), Expect = 4.537e-8 Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 Query: 51 MRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 MRSGRIV+ LSG FAG KA IVRPTDE NGE P Sbjct: 1 MRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKP 33
BLAST of EMLSAG00000006010 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1323_size47899-snap-gene-0.17 (protein:Tk03421 transcript:maker-scaffold1323_size47899-snap-gene-0.17-mRNA-1 annotation:"60s ribosomal protein l27") HSP 1 Score: 49.2914 bits (116), Expect = 4.522e-9 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0 Query: 47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83 M +IM+SG++V+ LSG FAG KA IV+PTDE + P Sbjct: 1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKP 37 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006010 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000006010 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000006010 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000006010 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006010 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000006010 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 4
BLAST of EMLSAG00000006010 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s326:412759..435794- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006010-688776 ID=EMLSAG00000006010-688776|Name=EMLSAG00000006010|organism=Lepeophtheirus salmonis|type=gene|length=23036bp|location=Sequence derived from alignment at LSalAtl2s326:412759..435794- (Lepeophtheirus salmonis)back to top Add to Basket
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