EMLSAG00000006347, EMLSAG00000006347-689113 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006347
Unique NameEMLSAG00000006347-689113
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000006347 vs. L. salmonis peptides
Match: EMLSAP00000006347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s346:648733:650315:1 gene:EMLSAG00000006347 transcript:EMLSAT00000006347 description:"maker-LSalAtl2s346-augustus-gene-6.36")

HSP 1 Score: 917.146 bits (2369), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MDLCNSTKMNVCSQEGSLQESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSLILDASYQHLMNSVDLQSCTTSHFSVSKGSTFDLYEKLLESSPSCGSLIIESVPHMENKCNLNVSLSSNKLCPGSQEWNSGTYYSSNNEQLNSTIQPDDDMSMTIYPKKVGNEPECSDIRPLNNQSVFTPHIRSSEDLHSPLLISSLNLTNCKSSHTYNAFFKGSNDCSISLPTPPKKLCKICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDDPCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEIFKKKGSIY 445
            MDLCNSTKMNVCSQEGSLQESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSLILDASYQHLMNSVDLQSCTTSHFSVSKGSTFDLYEKLLESSPSCGSLIIESVPHMENKCNLNVSLSSNKLCPGSQEWNSGTYYSSNNEQLNSTIQPDDDMSMTIYPKKVGNEPECSDIRPLNNQSVFTPHIRSSEDLHSPLLISSLNLTNCKSSHTYNAFFKGSNDCSISLPTPPKKLCKICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDDPCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEIFKKKGSIY
Sbjct:    1 MDLCNSTKMNVCSQEGSLQESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSLILDASYQHLMNSVDLQSCTTSHFSVSKGSTFDLYEKLLESSPSCGSLIIESVPHMENKCNLNVSLSSNKLCPGSQEWNSGTYYSSNNEQLNSTIQPDDDMSMTIYPKKVGNEPECSDIRPLNNQSVFTPHIRSSEDLHSPLLISSLNLTNCKSSHTYNAFFKGSNDCSISLPTPPKKLCKICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDDPCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEIFKKKGSIY 445          
BLAST of EMLSAG00000006347 vs. L. salmonis peptides
Match: EMLSAP00000010398 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:343786:345681:1 gene:EMLSAG00000010398 transcript:EMLSAT00000010398 description:"maker-LSalAtl2s68-augustus-gene-3.28")

HSP 1 Score: 214.542 bits (545), Expect = 8.518e-64
Identity = 172/465 (36.99%), Postives = 246/465 (52.90%), Query Frame = 0
Query:    1 MDLCNSTKMNVCSQEGSLQESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSLILDASYQHLMNSVDLQSCTTSH------FSVSKGSTFDLYEKLLESSPSCGSLIIESVPHMENKCNLNVSLSSNKLCPGSQEWNSGTYYSSNNEQLNSTIQPDDDMSM--TIYPKK---VGNEPECSDIRPLNNQSVFTPHIRSSEDLHSPLLISSLNLTNCKSSHTYNAFFKGSNDCSISLPTPPKKLC-------------KICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDDPCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEIFKKK 441
            MD    T+     +  SL++  P+++LNVP PK+V GKVKV T+STKTQVRYR       +++C+PQYKITR W+A            T  K    E+    N ++ I   SY+   + +D + C  S        S+S  S+  LYE  L SS SC S   E   +++   N +V     K  P    +NS    SS +       + D+ M M  ++ P K   + N  +  D+     +S  TP         SPL+ SSLN++  KS H Y  + K S   S S P  P                 KICR +I EKKL+YI++ +P N+++PK LT+   T E   P C+H CYFTGIGR   D L+D++IFGV   + CRIET++RTTII E D  C    ++  SFI RH ID++I +   +L+ DQ+ ++DP   R+A++ITVAQ K V PE++FK++
Sbjct:    1 MDTSKETQNKDSKEIESLEQDRPLVSLNVPFPKDVVGKVKVKTISTKTQVRYRSKGDPEEYKVCEPQYKITRLWNA------------TVSKTYPLEDTSSPNKSNSIQYESYEKSKD-MDSEKCKMSFEKKLSRLSLSSYSSISLYENALFSS-SCDSNE-EEDDYIDG--NSSVKFPRTKSTPS---FNSYDSLSSKDSSSEKDSEIDEQMIMKHSVTPYKGEILNNTSQNVDVTKRTGRSCVTP----PNGCPSPLMYSSLNISTAKSHHAYKTYVKSS--YSKSFPCGPTSTGTSLEKFQVPDTCDKICRTVIAEKKLQYIMANEPDNIISPKILTRKFKTFECLDPACRHHCYFTGIGRVAQDTLKDIAIFGVERYNLCRIETRLRTTIIIERDSDCDNFPNDIKSFIGRHNIDEDISDCFIKLADDQVGRDDPNIRRIADVITVAQMKKVDPEDLFKEQ 439          
BLAST of EMLSAG00000006347 vs. L. salmonis peptides
Match: EMLSAP00000010399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:348363:350705:1 gene:EMLSAG00000010399 transcript:EMLSAT00000010399 description:"maker-LSalAtl2s68-augustus-gene-3.29")

HSP 1 Score: 117.087 bits (292), Expect = 4.521e-29
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0
Query:  282 PKKLCKICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDD-PCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEI 437
            P    KI R + +EK+L Y+  + P     P A+ K   TVE    +C+   YFTG  +   +PL +LSIF    +  P RIETKIRTT++SEI    +  ND + +FID H ID+ I     +LS  Q+ K DPR LRVA +ITV Q K V PE++
Sbjct:  285 PGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQL 441          

HSP 2 Score: 87.8113 bits (216), Expect = 5.909e-19
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   19 QESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSL 107
            Q+  P+INLNVP+PK+V GKV+VTTVSTKTQVRY++++   ++  C P +++TRSWSA++ P+    E +   +  +E  KC     SL
Sbjct:   14 QDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPE----EAKKGIQLKLESEKCEDYQQSL 98          
BLAST of EMLSAG00000006347 vs. L. salmonis peptides
Match: EMLSAP00000007622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s43:825507:853210:1 gene:EMLSAG00000007622 transcript:EMLSAT00000007622 description:"maker-LSalAtl2s43-augustus-gene-8.9")

HSP 1 Score: 83.5741 bits (205), Expect = 2.403e-17
Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 0
Query:  288 ICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDDPCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQ-LTKEDPRTLRVANIITVAQ 428
            + R++++EKKL+YI + +P + M  K L+K   T E   P C    Y     R+  DPL+DLS+FGV   +   +E ++RTTI++++DP         D   ++H    + KE     S ++ + + +P+++RV++IITVAQ
Sbjct:  464 VNRQVLVEKKLDYITTNEPAHKMKSKTLSKKYKTTESLIPGCPTAKYLGNAKRSHYDPLKDLSMFGVETHE--IMEKRVRTTILTQLDPES-------DPSSEQHA---SKKEVSLTASINESMAESEPKSVRVSDIITVAQ 593          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006347 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006347 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006347 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000063470.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s346:64873... [more]
EMLSAP000000103988.518e-6436.99pep:novel supercontig:LSalAtl2s:LSalAtl2s68:343786... [more]
EMLSAP000000103994.521e-2942.68pep:novel supercontig:LSalAtl2s:LSalAtl2s68:348363... [more]
EMLSAP000000076222.403e-1733.80pep:novel supercontig:LSalAtl2s:LSalAtl2s43:825507... [more]
back to top
BLAST of EMLSAG00000006347 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006347 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006347 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006347 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s346supercontigLSalAtl2s346:648733..650315 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s346-augustus-gene-6.36
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006347 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006347EMLSAT00000006347-702194Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s346:648733..650315+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006347-689113 ID=EMLSAG00000006347-689113|Name=EMLSAG00000006347|organism=Lepeophtheirus salmonis|type=gene|length=1583bp|location=Sequence derived from alignment at LSalAtl2s346:648733..650315+ (Lepeophtheirus salmonis)
TTTTCCGGTTATTTGTTCAATAAGAGTTCGGTTTTAAAATTATGGATTTA TGTAATTCGACCAAAATGAATGTGTGCAGTCAAGAAGGCTCTCTCCAGGA AAGTCATCCCATAATTAATTTAAATGTTCCAATTCCAAAAAATGTCGATG GTAAAGTAAAGGTAACGACAGTATCTACTAAAACTCAAGTTAGATACAGA CGGAGTGAAAGTTCCATGAATTTTCAAATGTGTGATCCTCAATATAAAAT CACAAGGTCATGGAGTGCTATGATGTTGCCAGATACTGTGAAATGTGAAG AAGAGACGAACCAGAAGGCAGCCATTGAAGAAAATAAATGTGGAAGTAAT TTGAATAGTTTAATCTTAGATGCATCTTATCAGCATTTGATGAATTCTGT AGACCTTCAAAGCTGTACAACTTCTCATTTCTCAGTCTCTAAAGGCTCAA CATTTGATTTATATGAGAAATTATTAGAATCATCACCCTCATGTGGCTCC TTAATTATCGAAAGTGGTAAAATTTTAAATAAAGTTTGAAAAACAACTAA GATTAAATCGCCCCTCTTCTTTTCTCTTAAATATAGTTCCACATATGGAG AATAAGTGTAACCTCAATGTGTCTTTGTCGTCAAACAAGCTATGTCCAGG ATCACAAGAGTGGAATTCGGGTACATATTATAGTAGTAATAATGAACAAC TTAATAGTACCATTCAACCTGATGATGATATGAGTATGACAATATATCCT AAAAAAGTGGGAAATGAGCCTGAATGTTCGGATATAAGACCTTTAAATAA TCAAAGTGTGTTTACGCCTCATATCAGGTCATCCGAGGATCTGCATTCTC CTTTATTAATATCTTCCCTTAATCTTACAAACTGCAAATCAAGTCACACA TATAATGCTTTTTTTAAAGGGTCAAATGACTGTTCTATCTCTCTCCCCAC TCCACCAAAAAAGCTATGTAAAATTTGTCGTCGAATTATAATTGAAAAAA AGTTAGAATATATCATTTCCATGGACCCATGCAATGTTATGGCACCTAAA GCATTAACAAAACATTTATACACAGTAGAACGTGAAACTCCAGACTGCCA GCATCGATGTTATTTTACAGGAATAGGAAGAGCAGGAGGGGATCCGTTAC AAGATCTTTCAATCTTTGGAGTACCAAATGATGATCCATGTCGAATTGAA ACAAAGATTCGAACAACAATTATAAGTGAAATAGATCCCACATGCAAATG TGTTAATGATAATTTTGATTCTTTCATTGATCGCCATTGTATCGATGATA ATATTAAGGAATTTGTTGAGAGATTATCCTGTGATCAATTGACTAAAGAA GATCCAAGAACTCTTCGAGTTGCTAATATTATTACTGTAGCTCAGACAAA AAATGTTTGTCCGGAGGAAATATTTAAGAAGAAGGGTTCTATTTATTAAC TGCTAATAAATTCATTGATTTAATTTGTTTTTGTTTTAATATTTCTGTTT CTAGCATTTCCACTATTTATGTATAATAAAATGCCTTGAATTTATTTATT GAAATAATTTTATTTCTTCGTTTAAGTCCCAAA
back to top
Add to Basket