EMLSAG00000006410, EMLSAG00000006410-689176 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006410
Unique NameEMLSAG00000006410-689176
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006410 vs. C. finmarchicus
Match: gi|592793374|gb|GAXK01161194.1| (TSA: Calanus finmarchicus comp34475_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.149e-3
Identity = 26/77 (33.77%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   15 LRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCIC--SNKDKADDSSQLVYQQMNKSDQSF 89
            L++E++ L++ +      H  E+++ + AN+KVI EYK+ NK LQ++V I   S +D  D +S  +    +K+D S 
Sbjct: 5067 LKNELKVLQKQMDTKTAQHEREVNRTKLANQKVIAEYKETNKVLQRRVEIVVDSPRDH-DTTSPTLEADDSKTDASL 5294
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BLAST of EMLSAG00000006410 vs. C. finmarchicus
Match: gi|592902742|gb|GAXK01055633.1| (TSA: Calanus finmarchicus comp4531916_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.299e+0
Identity = 16/52 (30.77%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   12 EDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVC 63
            E LL++EI+ L+ ++ +A      E  +++ + +KVIN+ +D++K+L++++C
Sbjct:  281 ETLLKEEIKRLEMNLSKA----EKENHRLKHSYDKVINDSEDSHKQLKRKIC 424
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BLAST of EMLSAG00000006410 vs. C. finmarchicus
Match: gi|592836309|gb|GAXK01121235.1| (TSA: Calanus finmarchicus comp744203_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.355e+0
Identity = 12/55 (21.82%), Postives = 27/55 (49.09%), Query Frame = 0 
Query:   44 NEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSA 98
             E  +N ++  +  +   +CICS K  A  SS  +  +++  D +  +  S+ ++
Sbjct:  232 TESFVNVFEAFSTNISVFICICSEKISAPASSTSITARISSEDDTSSVPVSVAAS 396
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BLAST of EMLSAG00000006410 vs. C. finmarchicus
Match: gi|592836310|gb|GAXK01121234.1| (TSA: Calanus finmarchicus comp744203_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.842e+0
Identity = 12/55 (21.82%), Postives = 27/55 (49.09%), Query Frame = 0 
Query:   44 NEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSA 98
             E  +N ++  +  +   +CICS K  A  SS  +  +++  D +  +  S+ ++
Sbjct:  262 TESFVNVFEAFSTNISVFICICSEKISAPASSTSITARISSEDDTSSVPVSVAAS 426
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BLAST of EMLSAG00000006410 vs. C. finmarchicus
Match: gi|592886727|gb|GAXK01071648.1| (TSA: Calanus finmarchicus comp733495_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.316e+0
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    2 FEIREYDGEVEDLLRDEIESLKQDVIQA 29
            + +RE D    D+ R++IE+ KQD+I A
Sbjct: 2535 YLVREEDSAANDITREDIENTKQDIIHA 2618
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BLAST of EMLSAG00000006410 vs. L. salmonis peptides
Match: EMLSAP00000006410 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:759416:762862:1 gene:EMLSAG00000006410 transcript:EMLSAT00000006410 description:"maker-LSalAtl2s350-augustus-gene-6.33")

HSP 1 Score: 228.024 bits (580), Expect = 6.701e-78
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MFEIREYDGEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISGKNKMKSKVRNV 115
            MFEIREYDGEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISGKNKMKSKVRNV
Sbjct:    1 MFEIREYDGEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISGKNKMKSKVRNV 115
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BLAST of EMLSAG00000006410 vs. L. salmonis peptides
Match: EMLSAP00000006390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:207605:212969:1 gene:EMLSAG00000006390 transcript:EMLSAT00000006390 description:"maker-LSalAtl2s350-augustus-gene-2.6")

HSP 1 Score: 175.637 bits (444), Expect = 1.474e-51
Identity = 88/109 (80.73%), Postives = 94/109 (86.24%), Query Frame = 0 
Query:    7 YDGEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISGKNKMKSKVRNV 115
            YDGEVEDL RDEIESLK+DVIQAN YHS E DKI+KANEKVINEYKDANKELQKQV ICSN+D ADDSSQLV+QQMN+SDQSFKIDSSI    LQ SGK K + KVRN 
Sbjct:  978 YDGEVEDLPRDEIESLKRDVIQANAYHSKEFDKIKKANEKVINEYKDANKELQKQVGICSNRDTADDSSQLVHQQMNESDQSFKIDSSILPTELQASGKKKRRGKVRNT 1086
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BLAST of EMLSAG00000006410 vs. L. salmonis peptides
Match: EMLSAP00000000301 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402:4048:-1 gene:EMLSAG00000000301 transcript:EMLSAT00000000301 description:"snap_masked-LSalAtl2s1044-processed-gene-0.17")

HSP 1 Score: 151.754 bits (382), Expect = 2.214e-47
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 0 
Query:    9 GEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQ 101
            GEVEDLLRDEIESLK+DV QAN  HS ELDKI+KAN+KVI EYKDANKELQKQV ICSN+D A+DSSQL++QQMNKSDQSFKIDSSI S GLQ
Sbjct:    3 GEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQ 95
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BLAST of EMLSAG00000006410 vs. L. salmonis peptides
Match: EMLSAP00000006900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s390:414906:420715:1 gene:EMLSAG00000006900 transcript:EMLSAT00000006900 description:"augustus_masked-LSalAtl2s390-processed-gene-3.6")

HSP 1 Score: 63.5438 bits (153), Expect = 1.219e-12
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   12 EDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKI 91
            E+ L+ EI+SLK  + +AN  HS E++KI++ N KVI EYKDAN+ELQKQ+ + SN   +DDS Q   + M ++D+S  +
Sbjct:  500 ENSLKSEIDSLKCQISRANNKHSREIEKIKRTNGKVIQEYKDANRELQKQIGLTSN--ISDDSLQ---KSMLEADESLNV 574
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006410 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006410 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592793374|gb|GAXK01161194.1|1.149e-333.77TSA: Calanus finmarchicus comp34475_c3_seq1 transc... [more]
gi|592902742|gb|GAXK01055633.1|1.299e+030.77TSA: Calanus finmarchicus comp4531916_c0_seq1 tran... [more]
gi|592836309|gb|GAXK01121235.1|4.355e+021.82TSA: Calanus finmarchicus comp744203_c0_seq5 trans... [more]
gi|592836310|gb|GAXK01121234.1|4.842e+021.82TSA: Calanus finmarchicus comp744203_c0_seq4 trans... [more]
gi|592886727|gb|GAXK01071648.1|6.316e+042.86TSA: Calanus finmarchicus comp733495_c0_seq1 trans... [more]
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BLAST of EMLSAG00000006410 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000064106.701e-78100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s350:75941... [more]
EMLSAP000000063901.474e-5180.73pep:novel supercontig:LSalAtl2s:LSalAtl2s350:20760... [more]
EMLSAP000000003012.214e-4782.80pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402... [more]
EMLSAP000000069001.219e-1247.50pep:novel supercontig:LSalAtl2s:LSalAtl2s390:41490... [more]
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BLAST of EMLSAG00000006410 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006410 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006410 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006410 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s350supercontigLSalAtl2s350:759416..762862 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s350-augustus-gene-6.33
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006410 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006410EMLSAT00000006410-702257Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s350:759416..762862+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006410-689176 ID=EMLSAG00000006410-689176|Name=EMLSAG00000006410|organism=Lepeophtheirus salmonis|type=gene|length=3447bp|location=Sequence derived from alignment at LSalAtl2s350:759416..762862+ (Lepeophtheirus salmonis)
TTTTACTCCTAATAGCAGACAATTCTAAGACCTGGAGTGTTTCGTCAAAG
AGGTAGTGAGACTGACTAATATTAACAATCATGGAAGCCTTTCAGAATCC
ATCAAAGAATGTTTGAAATAAGAGAGTGAGTTTTGAATCTTGAAAGGAAC
AATGGCATTTTTCCTCACTTCTTTTATCCGTTGTTTGTCTCTCAACGTTT
TCATCACTTTACCCAGAACAAGATGGGATGCATTAATGTTCCCGGTCTGT
ACTCGCCTTGACCCTACATTCCTTGTTTTCTTTATTCGCTCCAAGCCTGC
CAAATCACAGAAAGAGAGAATATTTACCCGAGCATATTTGGGTTGATTTA
AATCACAAAATTGAATTAACTTCACTGTAAAAATGTAGTGACACTTAGAA
GAATTGTGATTTAGTTTAGTGACAGCAAAGTGTAAATTTTTCTACCAATA
ATAGGAGTTTATAAGCCTCATCTGCAGAAGGGACGTGTATTTCTTTGAGA
CTCTTAATATAGGGCCTCCTTTTCGTTCCTTACACAGCTTTATGGTTCCT
TTGCAGGAAGTCCCTTGCAACTTTTTGGATAAGTATACTTTTTCAAAGAG
ATTATATCTTTTCATTGTAGATTTCTGCATAGGAGATCCACAGAAAATAG
AACATTCTCTCGTAGTGTATCCCTTCCATCTGTTTCTTTTCTCTTTCCCT
GTGTGTTGTACTCATATCCACTGTACAGGAGGAGGTGGTGCTGTCGTCTT
CAACTGCTTGGGGGAGATAACTATCCAGACTTATCACAAATTCCTCCTCT
TCTTTCACGTCCTGGAAGCAAAGCGAAGAATCTATAATATAATCATTAAG
CTCTGATCCCATTATACAATATTTGAAAAACCAAACTTGCGACCAAAAAA
AAAAAAATAGAGAGAAAACGGAGTATGCTACATGTAAAAAAAACAACTTT
GAAATAAGGCTGGAGAATAATTTCTTGCAATGAACGATAATGAATCCAAG
TTGATGGCAGCTCAAAACTCTATGAAGGTAGTGTACATTTATATTCATTG
GATCATTTTACTGAAATTTATTCCAGACTGAATAAGCTAATGTGAAAAKC
CCATTAAAAGATGTAAAAGACGAACATTCATTCCTAATATTAAATAACAA
ATAACAGACAAGAAGAGAATTAATTAATGGAATAACTTCTGTCTGCTTAC
CAAAAGGAAAATTGCAAGATTGTCAGTGAAAACGAAAAAATCTCCGTAGA
ATTAACAAAACATAAACAAATTGGCAATGCTAGTGACAATGAAGTGGTAA
ATTTGTTCATAACACATTATTGATGTTTTTTTAATCTTCTCATAAAAAGT
TTTAATATTTGATTTTTCATTTTAAGAATTCTTTAGTAGTCGATAACCCA
CATCAAAGGTTCGATTCTACCTCTTCAGAAGTAAATGCTCTTTTAAAAGA
ATTAAATAAAACAAAACAACTGTATGAAAACCAAGAAAAAGTTGAAGAAC
AAAAAAAGAATAGGCTTKATAAGAATTTAAATGATGAAATTGAAACGCTA
ATTATAATTAAATCTTCAGAGGTGGAAAAAAATAATCTATTGTCTGAAAA
AGAAATTGAAATTCACAATCTAGAAAAGCAAAATTAAAAACTTGATGAAG
AAAGGTATAGCAAGTCAACGATCTCTTGAAGATAATTCTAAAGAAATAGA
AATACTTCTGAGAAGCAAAATATTATTGAGAATCTTGAGGTTTAAGTAAG
ACTTTCATTTATTAAATGAAGTTTTTAAAACATTATTTTTTTTACAGATA
AAGTCCTTACAGAAAGTGTGATTACAATCTTAAGAAAATAATTTAAAAAA
CTCAGCTGAGAGATAAAATCACGGAATTACAAAAGAAAGCAGTATATTTG
TGTACGGCTGCGAAGCTTCGAAAAAATGTGGAACACCTTGAATCTGATAT
TGAAGGCCAAAAATTATGAAGTTCAAAATTCGAAAGAGGAGCATTGGTCT
TATTTTCTTGCCCTATGATGAATTAATTAAATTGAAAGAGAAAAACAAGG
AGCGATGAATCTTTGAGATGTTATGATAAGATTTAATCCCAGAAAAAAAA
ACATCGTCAAATCTAGAAGAGGAAATTTCATTCGAGAACTTGAGCTAAAA
TTAGAGAAATCAGTTAGAGTGAAGTTTAACATAATTTTAAAAACTATTGT
TTTATATATTTATAAGTTTGCAGATATGATGGAGAGGTTGAAGACTTGCT
TAGAGATGAAATAGAATCATTAAAGCAGGATGTAATCCAAGCAAACATAT
ATCATTCAATGGAACTAGATAAGATCAGAAAAGCTAATGAAAAAGTAATC
AATGAATACAAGGATGCGAATAAGGAGCTCCAAAAACAAGTCTGCATTTG
TTCAAATAAGGATAAGGCAGATGATTCTAGTCAATTAGTCTATCAACAAA
TGAACAAATCAGATCAGAGCTTTAAAATTGACTCAAGCATCCAATCAGCT
GGATTGCAAATCTCTGGTAAAAACAAAATGAAGAGTAAAGTTAGAAATGT
CTAAAATAATAGTACAAAATCCAATAGCAGCTCCTCAATTTTGTTAAATG
AAAGCAATGTTGAAAATGTCCGAAGTTTATCCATGGATGCTCATGTTATC
TGTTATTTGATTCCTTAATTAAGACTAAATATTCTTCTTTTGCATCTTTT
AATGTGATCTTAACTTGAGCTAATTTAGTCTGGAGTAAATTTGGGTATAA
TGATCCAATTAATTATTATCATTTAATATAATAAGACTTTCTAACTGATA
TTAGTTTGGATTCATGATCGTCCTTCGCAAGAAATTATCCTCCATCTTTA
TTGAAAAGTTATTATGAATATGCAGCATACTCTGTCTTCTCGGCTAATTC
TTTCTGGTGGCCCAAAGTTGGTTTTTCAATTATTTTATTATAGGATTGAA
GTTTAAAGATTTTATAGCAGACTCTTTGTTCCTATTTTCTAAAGTTAATT
TATCCATTTCTTTTTTCATGGATTTGATTTTACTTTTACTACCTTCATTT
GTAAATTATTAAATCTTTACCTTCTCCTGGAGTTTTTTTCCAAACATCAA
GAAGACACTTGTGAGAGTCTTAAATAGTCACGTTTTGTTTCTTAATTTCC
ACTGCTCCAAGTCCAGCTATTTTGTCGTTAAATTCATCATCACTGATATC
GTGTCGTTTACGTTTACTATTTTCATTGTAGGATTTCTTAATTTTTTTAA
TTATCTAATCACAAGATGCATCACATCTTTCATATCTAATCACATGCGTT
CCGTTATTAACATTATGTTAGGGATTGATTTTTGTATGACTATAAGTATG
TAATTTGAGATAATGAATGTATATAAATGACAATAAAATATCTAATAATT
CCATCAATTAGCCTGTTTTGTGGAAATTTTTGAGAAAAAGTAGTAAA
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