EMLSAG00000006622, EMLSAG00000006622-689388 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006622 vs. C. finmarchicus
Match: gi|592930973|gb|GAXK01027580.1| (TSA: Calanus finmarchicus comp5242904_c0_seq1 transcribed RNA sequence) HSP 1 Score: 58.5362 bits (140), Expect = 1.323e-9 Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0 Query: 36 CRGINGQCISTSS--TCNGKFVAYHCPGRDVCCVNIQAS--------ECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQ 108 C + G C + SS T N V C G+ CCV+ + + D+HL EGN+ L+GY+PT+GSGVTIA+G D+G Sbjct: 60 CSQLGGTCKTLSSCYTTNSLVVRNKCQGKKYCCVDDPPNCPGKNIIEDMDKHLNEVEGNIMLEGYVPTNGSGVTIATGFDLGH 308
BLAST of EMLSAG00000006622 vs. C. finmarchicus
Match: gi|592847645|gb|GAXK01109899.1| (TSA: Calanus finmarchicus comp5339913_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 4.978e+0 Identity = 29/110 (26.36%), Postives = 51/110 (46.36%), Query Frame = 0 Query: 95 GSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMA----XAPGRP--KNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTK-KLNRGKCVVRSLNHYCG 197 GSGVTIA+G D+G + +++ +L+P+ A G+ K E ++ +S+++A +D K+ A + YT + V+ SL H+CG Sbjct: 9 GSGVTIATGYDLGHGSVISDCLKNDELWDRLKPFKGIKNMSAIGKAGYSVKKEAAVGYTLDPDNPIISLNEARSIDCCLKEEAIKATNKYTSGGTDCTVAVIVSLFHWCG 338
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:562329:563314:-1 gene:EMLSAG00000006622 transcript:EMLSAT00000006622 description:"maker-LSalAtl2s364-augustus-gene-5.24") HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0 Query: 1 MKIVHFGLFAVFVFGSLSNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270 MKIVHFGLFAVFVFGSLSNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC Sbjct: 1 MKIVHFGLFAVFVFGSLSNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006623 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:579060:580376:1 gene:EMLSAG00000006623 transcript:EMLSAT00000006623 description:"maker-LSalAtl2s364-augustus-gene-5.20") HSP 1 Score: 506.523 bits (1303), Expect = 0.000e+0 Identity = 243/273 (89.01%), Postives = 256/273 (93.77%), Query Frame = 0 Query: 1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270 MK+V+ GLFA++ FGSL SN CVYN RISVP+NDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIF KLEPYMA APG+PKNKAEVCRDSKIN+ RLTLSVS+A RLDQFFK+IASNKNS YTKKLN+GKCVV+SLNHYCGDLLVRRKENKCNFSGC SF+RNALIGKTATDSTFESALIAHRNCI TKG Y H+AERFRKEICYINSSHSFC Sbjct: 1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006624 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:596332:597435:1 gene:EMLSAG00000006624 transcript:EMLSAT00000006624 description:"maker-LSalAtl2s364-augustus-gene-6.35") HSP 1 Score: 462.996 bits (1190), Expect = 1.877e-165 Identity = 222/273 (81.32%), Postives = 243/273 (89.01%), Query Frame = 0 Query: 1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270 MK+V+ GLFA++VF SL SN CVYN RISVP+NDLKCRGING+C+S S CNGKFVAYHCPGRDVC VN+ +SECDRHL+ASEGNMY+ GYIPTSGSGVTIASGVDIGQRLP+EY+GLDRDIF KLEPYMA APG+PKNKAEVC DS+IN RLT+SVS+ALRLDQFFK IASNK+S Y KKL RG CVVRSLNHYCG+LLVR KENKCNFSGC SF+RN LI K ATDSTFESALI HRNCINTKG RYRH+AERFRKEICYINSSHSFC Sbjct: 1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006863 (pep:novel supercontig:LSalAtl2s:LSalAtl2s388:437926:439634:1 gene:EMLSAG00000006863 transcript:EMLSAT00000006863 description:"maker-LSalAtl2s388-augustus-gene-3.12") HSP 1 Score: 323.939 bits (829), Expect = 3.872e-112 Identity = 160/183 (87.43%), Postives = 169/183 (92.35%), Query Frame = 0 Query: 1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTK 180 MKIV+ LFA++VFGSL SNGCVY+ RI++P NDLKC INGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVC DSKIN+ RLTLSVS+A LDQFFK+IASNKNS YTK Sbjct: 1 MKIVYLRLFAIYVFGSLFTXSNGCVYHNRINLPGNDLKCIEINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCGDSKINKNRLTLSVSEASGLDQFFKEIASNKNSEYTK 183
BLAST of EMLSAG00000006622 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold488_size158317-snap-gene-0.22 (protein:Tk09350 transcript:maker-scaffold488_size158317-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 106.686 bits (265), Expect = 4.669e-27 Identity = 72/238 (30.25%), Postives = 123/238 (51.68%), Query Frame = 0 Query: 35 KCRGINGQCISTSSTCNGKFVAYHCPGRDV--CCVN--IQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNG--LDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLN-RGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINS 265 +C + G C + C+ + CPG CC++ + +H+ EG +YL GYIP + SGVTIASGVD+GQ+ + + I K PY+ K A+V + ++ L+L++ +AL++D F N+ + +++ +G+ VV +L H+CG + + ENKC GC S+ NA+ ATD+ AL+ H+ C+ K + +R ++EI +++S Sbjct: 126 QCASLGGSC-QMFTRCSSVSASGMCPGNSAQRCCLSNVVPTDVIKKHISDEEGGIYLTGYIPLN-SGVTIASGVDLGQQNENDLKSRKVPTSIIGKFRPYLGL-----KTPAQV-ASAGLSPSSLSLTLDEALKVDTAFLSYLMNRIRPFIGQMSPKGQAVVAALTHWCGWMWPSKPENKCYIQGCPSYFENAISNTKATDAILRRALLDHKTCMGQKNMPQWKL-DRIQREINFLDS 354 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006622 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006622 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000006622 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006622 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006622 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006622 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s364:562329..563314- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006622-689388 ID=EMLSAG00000006622-689388|Name=EMLSAG00000006622|organism=Lepeophtheirus salmonis|type=gene|length=986bp|location=Sequence derived from alignment at LSalAtl2s364:562329..563314- (Lepeophtheirus salmonis)back to top Add to Basket
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