EMLSAG00000006622, EMLSAG00000006622-689388 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006622
Unique NameEMLSAG00000006622-689388
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000006622 vs. C. finmarchicus
Match: gi|592930973|gb|GAXK01027580.1| (TSA: Calanus finmarchicus comp5242904_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 58.5362 bits (140), Expect = 1.323e-9
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0
Query:   36 CRGINGQCISTSS--TCNGKFVAYHCPGRDVCCVNIQAS--------ECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQ 108
            C  + G C + SS  T N   V   C G+  CCV+   +        + D+HL   EGN+ L+GY+PT+GSGVTIA+G D+G 
Sbjct:   60 CSQLGGTCKTLSSCYTTNSLVVRNKCQGKKYCCVDDPPNCPGKNIIEDMDKHLNEVEGNIMLEGYVPTNGSGVTIATGFDLGH 308          
BLAST of EMLSAG00000006622 vs. C. finmarchicus
Match: gi|592847645|gb|GAXK01109899.1| (TSA: Calanus finmarchicus comp5339913_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.978e+0
Identity = 29/110 (26.36%), Postives = 51/110 (46.36%), Query Frame = 0
Query:   95 GSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMA----XAPGRP--KNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTK-KLNRGKCVVRSLNHYCG 197
            GSGVTIA+G D+G          + +++ +L+P+       A G+     K E      ++     +S+++A  +D   K+ A    + YT    +    V+ SL H+CG
Sbjct:    9 GSGVTIATGYDLGHGSVISDCLKNDELWDRLKPFKGIKNMSAIGKAGYSVKKEAAVGYTLDPDNPIISLNEARSIDCCLKEEAIKATNKYTSGGTDCTVAVIVSLFHWCG 338          
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:562329:563314:-1 gene:EMLSAG00000006622 transcript:EMLSAT00000006622 description:"maker-LSalAtl2s364-augustus-gene-5.24")

HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MKIVHFGLFAVFVFGSLSNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270
            MKIVHFGLFAVFVFGSLSNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC
Sbjct:    1 MKIVHFGLFAVFVFGSLSNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270          
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006623 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:579060:580376:1 gene:EMLSAG00000006623 transcript:EMLSAT00000006623 description:"maker-LSalAtl2s364-augustus-gene-5.20")

HSP 1 Score: 506.523 bits (1303), Expect = 0.000e+0
Identity = 243/273 (89.01%), Postives = 256/273 (93.77%), Query Frame = 0
Query:    1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270
            MK+V+ GLFA++ FGSL   SN CVYN RISVP+NDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIF KLEPYMA APG+PKNKAEVCRDSKIN+ RLTLSVS+A RLDQFFK+IASNKNS YTKKLN+GKCVV+SLNHYCGDLLVRRKENKCNFSGC SF+RNALIGKTATDSTFESALIAHRNCI TKG  Y H+AERFRKEICYINSSHSFC
Sbjct:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273          
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006624 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:596332:597435:1 gene:EMLSAG00000006624 transcript:EMLSAT00000006624 description:"maker-LSalAtl2s364-augustus-gene-6.35")

HSP 1 Score: 462.996 bits (1190), Expect = 1.877e-165
Identity = 222/273 (81.32%), Postives = 243/273 (89.01%), Query Frame = 0
Query:    1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270
            MK+V+ GLFA++VF SL   SN CVYN RISVP+NDLKCRGING+C+S S  CNGKFVAYHCPGRDVC VN+ +SECDRHL+ASEGNMY+ GYIPTSGSGVTIASGVDIGQRLP+EY+GLDRDIF KLEPYMA APG+PKNKAEVC DS+IN  RLT+SVS+ALRLDQFFK IASNK+S Y KKL RG CVVRSLNHYCG+LLVR KENKCNFSGC SF+RN LI K ATDSTFESALI HRNCINTKG RYRH+AERFRKEICYINSSHSFC
Sbjct:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273          
BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Match: EMLSAP00000006863 (pep:novel supercontig:LSalAtl2s:LSalAtl2s388:437926:439634:1 gene:EMLSAG00000006863 transcript:EMLSAT00000006863 description:"maker-LSalAtl2s388-augustus-gene-3.12")

HSP 1 Score: 323.939 bits (829), Expect = 3.872e-112
Identity = 160/183 (87.43%), Postives = 169/183 (92.35%), Query Frame = 0
Query:    1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTK 180
            MKIV+  LFA++VFGSL   SNGCVY+ RI++P NDLKC  INGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVC DSKIN+ RLTLSVS+A  LDQFFK+IASNKNS YTK
Sbjct:    1 MKIVYLRLFAIYVFGSLFTXSNGCVYHNRINLPGNDLKCIEINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCGDSKINKNRLTLSVSEASGLDQFFKEIASNKNSEYTK 183          
BLAST of EMLSAG00000006622 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold488_size158317-snap-gene-0.22 (protein:Tk09350 transcript:maker-scaffold488_size158317-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 106.686 bits (265), Expect = 4.669e-27
Identity = 72/238 (30.25%), Postives = 123/238 (51.68%), Query Frame = 0
Query:   35 KCRGINGQCISTSSTCNGKFVAYHCPGRDV--CCVN--IQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNG--LDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLN-RGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINS 265
            +C  + G C    + C+    +  CPG     CC++  +      +H+   EG +YL GYIP + SGVTIASGVD+GQ+   +     +   I  K  PY+       K  A+V   + ++   L+L++ +AL++D  F     N+   +  +++ +G+ VV +L H+CG +   + ENKC   GC S+  NA+    ATD+    AL+ H+ C+  K      + +R ++EI +++S
Sbjct:  126 QCASLGGSC-QMFTRCSSVSASGMCPGNSAQRCCLSNVVPTDVIKKHISDEEGGIYLTGYIPLN-SGVTIASGVDLGQQNENDLKSRKVPTSIIGKFRPYLGL-----KTPAQV-ASAGLSPSSLSLTLDEALKVDTAFLSYLMNRIRPFIGQMSPKGQAVVAALTHWCGWMWPSKPENKCYIQGCPSYFENAISNTKATDAILRRALLDHKTCMGQKNMPQWKL-DRIQREINFLDS 354          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006622 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006622 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592930973|gb|GAXK01027580.1|1.323e-940.96TSA: Calanus finmarchicus comp5242904_c0_seq1 tran... [more]
gi|592847645|gb|GAXK01109899.1|4.978e+026.36TSA: Calanus finmarchicus comp5339913_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006622 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000066220.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s364:56232... [more]
EMLSAP000000066230.000e+089.01pep:novel supercontig:LSalAtl2s:LSalAtl2s364:57906... [more]
EMLSAP000000066241.877e-16581.32pep:novel supercontig:LSalAtl2s:LSalAtl2s364:59633... [more]
EMLSAP000000068633.872e-11287.43pep:novel supercontig:LSalAtl2s:LSalAtl2s388:43792... [more]
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BLAST of EMLSAG00000006622 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006622 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006622 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006622 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold488_size158317-snap-gene-0.224.669e-2730.25protein:Tk09350 transcript:maker-scaffold488_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s364supercontigLSalAtl2s364:562329..563314 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s364-augustus-gene-5.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006622 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006622EMLSAT00000006622-702469Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s364:562329..563314-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006622-689388 ID=EMLSAG00000006622-689388|Name=EMLSAG00000006622|organism=Lepeophtheirus salmonis|type=gene|length=986bp|location=Sequence derived from alignment at LSalAtl2s364:562329..563314- (Lepeophtheirus salmonis)
ATGAAGATTGTCCACTTTGGATTATTTGCCGTTTTTGTATTCGGTAATAA TTTCCTTCTTTCTACATGATAATGCAATTTTGATTTGGATAATCCCCTTT TAGGCTCCTTATCCAATGGCTGTGTCTACAATCAACGAATTAGTGTCCCT CGAAATGATTTAAAATGCAGAGGCATTAATGGTCAATGTATTTCAACATC TTCCACTTGCAATGGAAAATTTGTTGCGTATCACTGTCCTGGAAGAGATG TTTGTTGTGTCAATATTCAAGCAAGTGAATGCGACCGGCATTTGATTGCT TCTGAGGGAAATATGTATCTTGATGGGTGAGCTGATCATATTAAATATAT ATTTTCTGTAGAATTGGTTTTAATTTGTGTTTTTCCAGCTATATCCCTAC GTCTGGATCAGGAGTTACTATCGCCAGTGGGGTTGACATTGGTCAGAGAC TTCCAAGAGAATACAATGGACTTGATCGGGATATATTTCTAAAGTTGGAA CCTTATATGGCTAKTGCTCCKGGAAGACCCAAAAATAAGGCAGAAGTTTG TCGTGATTCTAAGATCAATCGAATCAGATTGACTCTTTCTGTGTCTCAAG CCTTAGTAAGTAGCACTTCTAAAATAATGCGGTCTAAGTAATCCATTTAT ATATAGCGATTGGATCAATTCTTTAAACAAATAGCCTCGAATAAAAATTC TGCATACACTAAAAAACTAAATAGAGGAAAGTGCGTCGTTCGATCCTTGA ACCATTATTGTGGAGACCTTTTAGTTAGAAGGAAGGAAAACAAATGTAAT TTCTCCGGATGTACTAGTTTCCTTCGGAATGCATTGATTGGAAAGACGGC TACAGATTCAACATTTGAATCTGCCTTAATTGCTCATCGTAATTGTATCA ACACCAAAGGAAGAAGATACAGACATATTGCTGAAAGATTTCGCAAAGAA ATTTGTTATATTAATAGTTCACATTCATTTTGTTAA
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