EMLSAG00000006623, EMLSAG00000006623-689389 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006623
Unique NameEMLSAG00000006623-689389
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006623 vs. C. finmarchicus
Match: gi|592930973|gb|GAXK01027580.1| (TSA: Calanus finmarchicus comp5242904_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 58.5362 bits (140), Expect = 1.244e-9
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0 
Query:   39 CRGINGQCISTSS--TCNGKFVAYHCPGRDVCCVNIQAS--------ECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQ 111
            C  + G C + SS  T N   V   C G+  CCV+   +        + D+HL   EGN+ L+GY+PT+GSGVTIA+G D+G 
Sbjct:   60 CSQLGGTCKTLSSCYTTNSLVVRNKCQGKKYCCVDDPPNCPGKNIIEDMDKHLNEVEGNIMLEGYVPTNGSGVTIATGFDLGH 308
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BLAST of EMLSAG00000006623 vs. C. finmarchicus
Match: gi|592847645|gb|GAXK01109899.1| (TSA: Calanus finmarchicus comp5339913_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 8.411e-3
Identity = 32/110 (29.09%), Postives = 53/110 (48.18%), Query Frame = 0 
Query:   98 GSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMA----TAPGKP--KNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNK-GKCVVQSLNHYCG 200
            GSGVTIA+G D+G          + +++ +L+P+      +A GK     K E      ++ +   +S++EA  +D   KE A    ++YT         V+ SL H+CG
Sbjct:    9 GSGVTIATGYDLGHGSVISDCLKNDELWDRLKPFKGIKNMSAIGKAGYSVKKEAAVGYTLDPDNPIISLNEARSIDCCLKEEAIKATNKYTSGGTDCTVAVIVSLFHWCG 338
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BLAST of EMLSAG00000006623 vs. L. salmonis peptides
Match: EMLSAP00000006623 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:579060:580376:1 gene:EMLSAG00000006623 transcript:EMLSAT00000006623 description:"maker-LSalAtl2s364-augustus-gene-5.20")

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273
            MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC
Sbjct:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273
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BLAST of EMLSAG00000006623 vs. L. salmonis peptides
Match: EMLSAP00000006622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:562329:563314:-1 gene:EMLSAG00000006622 transcript:EMLSAT00000006622 description:"maker-LSalAtl2s364-augustus-gene-5.24")

HSP 1 Score: 506.523 bits (1303), Expect = 0.000e+0
Identity = 243/273 (89.01%), Postives = 256/273 (93.77%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273
            MK+V+ GLFA++ FGSL   SN CVYN RISVP+NDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIF KLEPYMA APG+PKNKAEVCRDSKIN+ RLTLSVS+A RLDQFFK+IASNKNS YTKKLN+GKCVV+SLNHYCGDLLVRRKENKCNFSGC SF+RNALIGKTATDSTFESALIAHRNCI TKG  Y H+AERFRKEICYINSSHSFC
Sbjct:    1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270
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BLAST of EMLSAG00000006623 vs. L. salmonis peptides
Match: EMLSAP00000006624 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:596332:597435:1 gene:EMLSAG00000006624 transcript:EMLSAT00000006624 description:"maker-LSalAtl2s364-augustus-gene-6.35")

HSP 1 Score: 488.804 bits (1257), Expect = 1.562e-175
Identity = 234/273 (85.71%), Postives = 249/273 (91.21%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273
            MKVVYLGLFAIY F SLFTPSNACVYNDRISVPQNDLKCRGING+C+S S  CNGKFVAYHCPGRDVC VN+ +SECDRHL+ASEGNMY+ GYIPTSGSGVTIASGVDIGQRLP+EY+GLDRDIFQKLEPYMATAPGKPKNKAEVC DS+IN  RLT+SVSEA RLDQFFK IASNK+SEY KKL +G CVV+SLNHYCG+LLVR KENKCNFSGCDSFIRN LI K ATDSTFESALI HRNCI TKG+ Y HVAERFRKEICYINSSHSFC
Sbjct:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273
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BLAST of EMLSAG00000006623 vs. L. salmonis peptides
Match: EMLSAP00000006863 (pep:novel supercontig:LSalAtl2s:LSalAtl2s388:437926:439634:1 gene:EMLSAG00000006863 transcript:EMLSAT00000006863 description:"maker-LSalAtl2s388-augustus-gene-3.12")

HSP 1 Score: 343.199 bits (879), Expect = 1.294e-119
Identity = 166/183 (90.71%), Postives = 172/183 (93.99%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTK 183
            MK+VYL LFAIY FGSLFT SN CVY++RI++P NDLKC  INGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIF KLEPYMA APG+PKNKAEVC DSKINKNRLTLSVSEAS LDQFFKEIASNKNSEYTK
Sbjct:    1 MKIVYLRLFAIYVFGSLFTXSNGCVYHNRINLPGNDLKCIEINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCGDSKINKNRLTLSVSEASGLDQFFKEIASNKNSEYTK 183
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BLAST of EMLSAG00000006623 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold488_size158317-snap-gene-0.22 (protein:Tk09350 transcript:maker-scaffold488_size158317-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 105.531 bits (262), Expect = 1.077e-26
Identity = 73/238 (30.67%), Postives = 123/238 (51.68%), Query Frame = 0 
Query:   38 KCRGINGQCISTSSTCNGKFVAYHCPGRDV--CCVN--IQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNG--LDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLN-KGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINS 268
            +C  + G C    + C+    +  CPG     CC++  +      +H+   EG +YL GYIP + SGVTIASGVD+GQ+   +     +   I  K  PY+       K  A+V   + ++ + L+L++ EA ++D  F     N+   +  +++ KG+ VV +L H+CG +   + ENKC   GC S+  NA+    ATD+    AL+ H+ C+  K      + +R ++EI +++S
Sbjct:  126 QCASLGGSC-QMFTRCSSVSASGMCPGNSAQRCCLSNVVPTDVIKKHISDEEGGIYLTGYIPLN-SGVTIASGVDLGQQNENDLKSRKVPTSIIGKFRPYLGL-----KTPAQV-ASAGLSPSSLSLTLDEALKVDTAFLSYLMNRIRPFIGQMSPKGQAVVAALTHWCGWMWPSKPENKCYIQGCPSYFENAISNTKATDAILRRALLDHKTCMGQKNMPQWKL-DRIQREINFLDS 354
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006623 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006623 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592930973|gb|GAXK01027580.1|1.244e-940.96TSA: Calanus finmarchicus comp5242904_c0_seq1 tran... [more]
gi|592847645|gb|GAXK01109899.1|8.411e-329.09TSA: Calanus finmarchicus comp5339913_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006623 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000066230.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s364:57906... [more]
EMLSAP000000066220.000e+089.01pep:novel supercontig:LSalAtl2s:LSalAtl2s364:56232... [more]
EMLSAP000000066241.562e-17585.71pep:novel supercontig:LSalAtl2s:LSalAtl2s364:59633... [more]
EMLSAP000000068631.294e-11990.71pep:novel supercontig:LSalAtl2s:LSalAtl2s388:43792... [more]
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BLAST of EMLSAG00000006623 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006623 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006623 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006623 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold488_size158317-snap-gene-0.221.077e-2630.67protein:Tk09350 transcript:maker-scaffold488_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s364supercontigLSalAtl2s364:579060..580376 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s364-augustus-gene-5.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006623 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006623EMLSAT00000006623-702470Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s364:579060..580376+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006623-689389 ID=EMLSAG00000006623-689389|Name=EMLSAG00000006623|organism=Lepeophtheirus salmonis|type=gene|length=1317bp|location=Sequence derived from alignment at LSalAtl2s364:579060..580376+ (Lepeophtheirus salmonis)
GTGCATTACAATACATAAAAACTAAATAAATCTCTCTTTTCTCCTCAGTT
GATTAAAAATTGCCAAAGTATGAAAGTCGTTTACCTTGGATTGTTTGCTA
TTTATGCATTTGGTAAATCATATATTTCTTTCTACATGTTAATGCACTTT
TAATTCGGATAATCATCTTTTAGGCTCCTTATTCACACCGTCCAATGCCT
GTGTCTACAATGATCGAATTAGTGTCCCTCAAAATGATTTAAAATGCAGA
GGCATTAATGGTCAATGTATTTCAACATCTTCCACTTGCAATGGAAAATT
TGTTGCGTATCACTGTCCTGGAAGAGATGTTTGTTGTGTCAATATTCAAG
CAAGTGAATGCGACCGGCATTTGATTGCTTCTGAGGGAAATATGTATCTT
GATGGGTGAGCTGATCATATTAAATATATTTTTTATGTAGCATTGGTTTT
AATTTGTGTTTTTCCAGCTATATCCCTACGTCTGGATCAGGAGTTACTAT
CGCTAGTGGGGTTGACATTGGTCAGAGACTTCCAAGAGAATACAATGGAC
TTGATCGAGATATATTTCAAAAGTTGGAACCCTATATGGCTACTGCTCCA
GGAAAACCCAAAAATAAGGCAGAAGTTTGTCGTGATTCTAAGATCAATAA
AAATAGATTGACTCTTTCTGTGTCTGAGGCCTCGGTAAGTTATGGTTCTC
TCAAAATAATGCTATCTATGTCATTCTTTTATTCATATTCATATAGCGAT
TGGATCAATTCTTTAAAGAGATTGCCTCCAACAAAAATTCTGAATATACT
AAAAAACTAAATAAAGGAAAGTGTGTCGTTCAATCCTTGAATCATTATTG
TGGAGACCTTTTAGTTAGAAGGAAGGAAAACAAATGTAATTTCTCCGGAT
GTGATAGTTTCATTCGGAATGCATTGATTGGAAAGACGGCTACAGACTCA
ACATTTGAATCTGCCTTGATTGCTCATCGTAATTGTATCAAAACCAAAGG
AAGTACATATAGTCACGTTGCTGAAAGATTTCGCAAAGAAATTTGTTATA
TTAATAGTTCACATTCATTTTGTTAAAATAATGCCTTTCAATGGTTTATT
AAATAAACTTTTTGTATGATTTTGAAGTTAAAAAATAAATTCAATTTAGC
TTTTTTATCCACTCTTGTCTGTTTAAAGGAAAAAGGGAAAATTATAAGAA
AACATATTGTAGCTAGTCTTCTCTATATTTCTTGTTGGCAACTGTGAATG
ATAATTTAGACACAAGTTATTATTAGTTACATCTTATTGACAATTATACG
TTTAATGAATATCAAAT
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