EMLSAG00000006624, EMLSAG00000006624-689390 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006624
Unique NameEMLSAG00000006624-689390
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006624 vs. GO
Match: - (symbol:PFL_0783 "Pesticin domain protein" species:220664 "Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR023347 GO:GO:0008152 EMBL:CP000076 InterPro:IPR023346 SUPFAM:SSF53955 GO:GO:0003796 Gene3D:1.10.530.40 RefSeq:YP_257920.1 STRING:220664.PFL_0783 EnsemblBacteria:AAY96185 GeneID:3481367 KEGG:pfl:PFL_0783 PATRIC:19870745 eggNOG:NOG70472 HOGENOM:HOG000119127 OMA:SVAFQYG OrthoDB:EOG6MWN7X ProtClustDB:CLSK768027 BioCyc:PFLU220664:GIX8-787-MONOMER Uniprot:Q4KIL3)

HSP 1 Score: 52.373 bits (124), Expect = 5.498e-7
Identity = 52/198 (26.26%), Postives = 88/198 (44.44%), Query Frame = 0 
Query:   81 LMASEGNMYIYGYIPT---SGSGVTIASGVDIGQRLPQEYDGLD--RDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFK-----VIASNKSS----EYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEIC 264
            + A EG     GY+P    S SGVT+ +G D+GQR  ++   L+   D+ ++L PY+     K K        + ++   L IS  EAL +D+ FK     ++A+N +     ++ +       V+ S+    GNL  R            +F   V+         ++SAL + RN  ++ GTR R  A+    ++ 
Sbjct:   11 IAALEGAAITRGYVPDPDKSKSGVTVGTGFDLGQRNVEDLQALNLPADLIRRLTPYLGLKGLKAK--------AFLDGQPLNISSDEALLVDEAFKAPFVDLLAANYTQASGVDFAQLPAPMQTVIASVAFQYGNLASR----------TPNFWAQVVARD------WKSALANLRNFGDSYGTRRRKEADLLGSQLT 184
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BLAST of EMLSAG00000006624 vs. C. finmarchicus
Match: gi|592930973|gb|GAXK01027580.1| (TSA: Calanus finmarchicus comp5242904_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.9138 bits (128), Expect = 6.345e-8
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 0 
Query:   39 CRGINGEC--VSKSYKCNGKFVAYHCPGRDVCFVNVASS--------ECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQ 111
            C  + G C  +S  Y  N   V   C G+  C V+   +        + D+HL   EGN+ + GY+PT+GSGVTIA+G D+G 
Sbjct:   60 CSQLGGTCKTLSSCYTTNSLVVRNKCQGKKYCCVDDPPNCPGKNIIEDMDKHLNEVEGNIMLEGYVPTNGSGVTIATGFDLGH 308
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BLAST of EMLSAG00000006624 vs. C. finmarchicus
Match: gi|592847645|gb|GAXK01109899.1| (TSA: Calanus finmarchicus comp5339913_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 5.670e-1
Identity = 34/112 (30.36%), Postives = 54/112 (48.21%), Query Frame = 0 
Query:   97 SGSGVTIASGVDIGQRLPQEYDGLDRD-IFQKLEPYMA----TAPGKP--KNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKR-GMCVVRSLNHYCG 200
            +GSGVTIA+G D+G       D L  D ++ +L+P+      +A GK     K E      ++     IS++EA  +D   K  A   +++Y        + V+ SL H+CG
Sbjct:    6 NGSGVTIATGYDLGHGSVIS-DCLKNDELWDRLKPFKGIKNMSAIGKAGYSVKKEAAVGYTLDPDNPIISLNEARSIDCCLKEEAIKATNKYTSGGTDCTVAVIVSLFHWCG 338
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BLAST of EMLSAG00000006624 vs. C. finmarchicus
Match: gi|592848365|gb|GAXK01109179.1| (TSA: Calanus finmarchicus comp5991794_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 6.774e+0
Identity = 24/68 (35.29%), Postives = 35/68 (51.47%), Query Frame = 0 
Query:  140 KNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFK 207
            KNK   C +   N  +L    SEA  LD   + ++ N+ S+ K KLKR +   R  NH+   L++R K
Sbjct:  157 KNKKIECTNKSTNDKQL--QHSEAKTLDGTNEPLSPNEDSKTKPKLKRKLQKNRK-NHHKACLVLRKK 351
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BLAST of EMLSAG00000006624 vs. L. salmonis peptides
Match: EMLSAP00000006624 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:596332:597435:1 gene:EMLSAG00000006624 transcript:EMLSAT00000006624 description:"maker-LSalAtl2s364-augustus-gene-6.35")

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273
            MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC
Sbjct:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273
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BLAST of EMLSAG00000006624 vs. L. salmonis peptides
Match: EMLSAP00000006623 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:579060:580376:1 gene:EMLSAG00000006623 transcript:EMLSAT00000006623 description:"maker-LSalAtl2s364-augustus-gene-5.20")

HSP 1 Score: 488.804 bits (1257), Expect = 1.562e-175
Identity = 234/273 (85.71%), Postives = 249/273 (91.21%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273
            MKVVYLGLFAIY F SLFTPSNACVYNDRISVPQNDLKCRGING+C+S S  CNGKFVAYHCPGRDVC VN+ +SECDRHL+ASEGNMY+ GYIPTSGSGVTIASGVDIGQRLP+EY+GLDRDIFQKLEPYMATAPGKPKNKAEVC DS+IN  RLT+SVSEA RLDQFFK IASNK+SEY KKL +G CVV+SLNHYCG+LLVR KENKCNFSGCDSFIRN LI K ATDSTFESALI HRNCI TKG+ Y HVAERFRKEICYINSSHSFC
Sbjct:    1 MKVVYLGLFAIYAFGSLFTPSNACVYNDRISVPQNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFQKLEPYMATAPGKPKNKAEVCRDSKINKNRLTLSVSEASRLDQFFKEIASNKNSEYTKKLNKGKCVVQSLNHYCGDLLVRRKENKCNFSGCDSFIRNALIGKTATDSTFESALIAHRNCIKTKGSTYSHVAERFRKEICYINSSHSFC 273
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BLAST of EMLSAG00000006624 vs. L. salmonis peptides
Match: EMLSAP00000006622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s364:562329:563314:-1 gene:EMLSAG00000006622 transcript:EMLSAT00000006622 description:"maker-LSalAtl2s364-augustus-gene-5.24")

HSP 1 Score: 462.996 bits (1190), Expect = 1.898e-165
Identity = 222/273 (81.32%), Postives = 243/273 (89.01%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKLKRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINSSHSFC 273
            MK+V+ GLFA++VF SL   SN CVYN RISVP+NDLKCRGING+C+S S  CNGKFVAYHCPGRDVC VN+ +SECDRHL+ASEGNMY+ GYIPTSGSGVTIASGVDIGQRLP+EY+GLDRDIF KLEPYMA APG+PKNKAEVC DS+IN  RLT+SVS+ALRLDQFFK IASNK+S Y KKL RG CVVRSLNHYCG+LLVR KENKCNFSGC SF+RN LI K ATDSTFESALI HRNCINTKG RYRH+AERFRKEICYINSSHSFC
Sbjct:    1 MKIVHFGLFAVFVFGSL---SNGCVYNQRISVPRNDLKCRGINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCRDSKINRIRLTLSVSQALRLDQFFKQIASNKNSAYTKKLNRGKCVVRSLNHYCGDLLVRRKENKCNFSGCTSFLRNALIGKTATDSTFESALIAHRNCINTKGRRYRHIAERFRKEICYINSSHSFC 270
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BLAST of EMLSAG00000006624 vs. L. salmonis peptides
Match: EMLSAP00000006863 (pep:novel supercontig:LSalAtl2s:LSalAtl2s388:437926:439634:1 gene:EMLSAG00000006863 transcript:EMLSAT00000006863 description:"maker-LSalAtl2s388-augustus-gene-3.12")

HSP 1 Score: 303.908 bits (777), Expect = 3.230e-104
Identity = 145/183 (79.23%), Postives = 162/183 (88.52%), Query Frame = 0 
Query:    1 MKVVYLGLFAIYVFASLFTPSNACVYNDRISVPQNDLKCRGINGECVSKSYKCNGKFVAYHCPGRDVCFVNVASSECDRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDRDIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKK 183
            MK+VYL LFAIYVF SLFT SN CVY++RI++P NDLKC  ING+C+S S  CNGKFVAYHCPGRDVC VN+ +SECDRHL+ASEGNMY+ GYIPTSGSGVTIASGVDIGQRLP+EY+GLDRDIF KLEPYMA APG+PKNKAEVCGDS+IN  RLT+SVSEA  LDQFFK IASNK+SEY K
Sbjct:    1 MKIVYLRLFAIYVFGSLFTXSNGCVYHNRINLPGNDLKCIEINGQCISTSSTCNGKFVAYHCPGRDVCCVNIQASECDRHLIASEGNMYLDGYIPTSGSGVTIASGVDIGQRLPREYNGLDRDIFLKLEPYMAXAPGRPKNKAEVCGDSKINKNRLTLSVSEASGLDQFFKEIASNKNSEYTK 183
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BLAST of EMLSAG00000006624 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold488_size158317-snap-gene-0.22 (protein:Tk09350 transcript:maker-scaffold488_size158317-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 107.457 bits (267), Expect = 2.611e-27
Identity = 75/240 (31.25%), Postives = 122/240 (50.83%), Query Frame = 0 
Query:   38 KCRGINGECVSKSYKCNGKFVAYHCPGRDV---CFVNVASSEC-DRHLMASEGNMYIYGYIPTSGSGVTIASGVDIGQRLPQEYDGLDR----DIFQKLEPYMATAPGKPKNKAEVCGDSRINTTRLTISVSEALRLDQFFKVIASNKSSEYKKKL-KRGMCVVRSLNHYCGNLLVRFKENKCNFSGCDSFIRNVLIEKNATDSTFESALIDHRNCINTKGTRYRHVAERFRKEICYINS 268
            +C  + G C     +C+    +  CPG      C  NV  ++   +H+   EG +Y+ GYIP + SGVTIASGVD+GQ+   E D   R     I  K  PY+       K  A+V   + ++ + L++++ EAL++D  F     N+   +  ++  +G  VV +L H+CG +     ENKC   GC S+  N +    ATD+    AL+DH+ C+  K      + +R ++EI +++S
Sbjct:  126 QCASLGGSC-QMFTRCSSVSASGMCPGNSAQRCCLSNVVPTDVIKKHISDEEGGIYLTGYIPLN-SGVTIASGVDLGQQ--NENDLKSRKVPTSIIGKFRPYLGL-----KTPAQV-ASAGLSPSSLSLTLDEALKVDTAFLSYLMNRIRPFIGQMSPKGQAVVAALTHWCGWMWPSKPENKCYIQGCPSYFENAISNTKATDAILRRALLDHKTCMGQKNMPQWKL-DRIQREINFLDS 354
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006624 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-5.498e-726.26symbol:PFL_0783 "Pesticin domain protein" species:... [more]
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BLAST of EMLSAG00000006624 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592930973|gb|GAXK01027580.1|6.345e-837.35TSA: Calanus finmarchicus comp5242904_c0_seq1 tran... [more]
gi|592847645|gb|GAXK01109899.1|5.670e-130.36TSA: Calanus finmarchicus comp5339913_c0_seq1 tran... [more]
gi|592848365|gb|GAXK01109179.1|6.774e+035.29TSA: Calanus finmarchicus comp5991794_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006624 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000066240.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s364:59633... [more]
EMLSAP000000066231.562e-17585.71pep:novel supercontig:LSalAtl2s:LSalAtl2s364:57906... [more]
EMLSAP000000066221.898e-16581.32pep:novel supercontig:LSalAtl2s:LSalAtl2s364:56232... [more]
EMLSAP000000068633.230e-10479.23pep:novel supercontig:LSalAtl2s:LSalAtl2s388:43792... [more]
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BLAST of EMLSAG00000006624 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006624 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006624 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006624 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold488_size158317-snap-gene-0.222.611e-2731.25protein:Tk09350 transcript:maker-scaffold488_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s364supercontigLSalAtl2s364:596332..597435 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s364-augustus-gene-6.35
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006624 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006624EMLSAT00000006624-702471Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s364:596332..597435+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006624-689390 ID=EMLSAG00000006624-689390|Name=EMLSAG00000006624|organism=Lepeophtheirus salmonis|type=gene|length=1104bp|location=Sequence derived from alignment at LSalAtl2s364:596332..597435+ (Lepeophtheirus salmonis)
TTGATTAAAAATTGCCAAAGTATGAAAGTCGTCTACCTTGGATTGTTTGC
CATTTATGTATTTGGTAATCATATCCTTCTTTCTAGTTGTTAATGCACCT
TTGATTTGTATATTCCTCTTTTAGCCTCCTTATTCACACCGTCCAATGCA
TGTGTCTACAATGATAGAATTAGTGTCCCTCAAAATGATTTAAAATGTAG
AGGCATTAATGGTGAATGTGTCTCAAAATCTTACAAATGCAATGGAAAAT
TTGTTGCATATCACTGTCCTGGAAGAGATGTTTGTTTTGTTAACGTTGCA
TCCAGTGAATGCGACCGGCATTTGATGGCTTCTGAAGGAAATATGTATAT
TTATGGGTGAGTTGATCATATTAAATATATATTCTCTGTAGCATTGGTTT
TAATTTGTGATTTAACAGCTATATCCCTACGTCTGGATCAGGAGTTACTA
TCGCTAGTGGGGTTGACATTGGTCAGAGACTTCCACAAGAATACGATGGA
CTTGATCGAGATATATTTCAAAAGTTGGAACCCTATATGGCTACTGCTCC
AGGAAAACCCAAAAATAAGGCAGAAGTTTGTGGTGATTCTAGGATCAATA
CAACTAGATTAACTATTTCTGTGTCTGAGGCCTTAGTAAGTGATAGTACT
CACAAAATAATGCTACCTTTGTTATCCTTTTATTCATATAGCGATTGGAT
CAATTCTTTAAAGTAATTGCCTCCAATAAAAGTTCTGAATATAAAAAAAA
ATTAAAAAGAGGAATGTGCGTCGTTCGATCCTTGAACCATTATTGTGGAA
ACCTTTTGGTTAGATTTAAGGAAAACAAATGTAATTTCTCCGGATGTGAT
AGTTTCATTCGGAATGTATTGATTGAAAAGAATGCTACAGACTCAACATT
TGAATCTGCCTTGATTGATCATCGTAATTGTATCAACACCAAAGGAACAA
GATACAGACATGTTGCTGAAAGATTTCGCAAAGAAATTTGTTATATTAAT
AGTTCACATTCATTTTGTTAAAATAATGCCTTTCAATGGTTTATTAAATA
AACTTTTTGTTTGATTTTGAAGTTAAATTGAAAATAAAATGAGTATGCAG
TTAT
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