EMLSAG00000006928, EMLSAG00000006928-689694 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592907253|gb|GAXK01051122.1| (TSA: Calanus finmarchicus comp764378_c0_seq7 transcribed RNA sequence) HSP 1 Score: 55.8398 bits (133), Expect = 5.786e-8 Identity = 32/111 (28.83%), Postives = 56/111 (50.45%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLS----TSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEY 148 ++L C + +QWCYW + + +YP T + E+ + SS C + + E + ++ G WKCHLA TD S + +DE+ + +H+A PA + S+ + Sbjct: 163 LDLFCESSTPYQWCYWAH--NTSEYPTTSHKGGGEETEETVWGFQWRKSSTRCGLHV-----ERASVEFRGAWKCHLADTDV-MASDNMRDEKWVRVHVATPAMVGISVTH 471
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592907257|gb|GAXK01051118.1| (TSA: Calanus finmarchicus comp764378_c0_seq3 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 2.435e-7 Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLS----TSSESCKITIHLDGSEERAQ-KYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYN 149 ++L C + +QWCYW + + +YP T + E+ + SS C + + ERA ++ G WKCHLA TD S + +DE+ + +H+A PA + S+ + Sbjct: 163 LDLFCESSTPYQWCYWAH--NTSEYPTTSHKGGGEETEETVWGFQWRKSSTRCGLHV------ERASVEFRGAWKCHLADTDV-MASDNMRDEKWVRVHVATPAMVGISVTHT 474
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592907259|gb|GAXK01051116.1| (TSA: Calanus finmarchicus comp764378_c0_seq1 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 2.468e-7 Identity = 32/112 (28.57%), Postives = 56/112 (50.00%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLS----TSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYN 149 ++L C + +QWCYW + + +YP T + E+ + SS C + + E + ++ G WKCHLA TD S + +DE+ + +H+A PA + S+ + Sbjct: 498 LDLFCESSTPYQWCYWAH--NTSEYPTTSHKGGGEETEETVWGFQWRKSSTRCGLHV-----ERASVEFRGAWKCHLADTDV-MASDNMRDEKWVRVHVATPAMVGISVTHT 809
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592907258|gb|GAXK01051117.1| (TSA: Calanus finmarchicus comp764378_c0_seq2 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 2.476e-7 Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLS----TSSESCKITIHLDGSEERAQ-KYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYN 149 ++L C + +QWCYW + + +YP T + E+ + SS C + + ERA ++ G WKCHLA TD S + +DE+ + +H+A PA + S+ + Sbjct: 446 LDLFCESSTPYQWCYWAH--NTSEYPTTSHKGGGEETEETVWGFQWRKSSTRCGLHV------ERASVEFRGAWKCHLADTDV-MASDNMRDEKWVRVHVATPAMVGISVTHT 757
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592822811|gb|GAXK01131757.1| (TSA: Calanus finmarchicus comp160673_c1_seq2 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 2.998e-7 Identity = 33/105 (31.43%), Postives = 53/105 (50.48%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSI 146 +EL C S +QWCYW + + Q++ + D + SS C + I ++ G+WKCH+A TD +EV S +DE+ I + +A PA + S+ Sbjct: 219 LELFCESSSPYQWCYWAHGE--QEFRTVIGDEGLISPLSFEWVKSSTKCGVKI-----TSLEDEHAGEWKCHMADTDEEEV-ESIRDERFIEVFVAHPARVEISV 509 HSP 2 Score: 41.5874 bits (96), Expect = 8.650e-3 Identity = 37/129 (28.68%), Postives = 65/129 (50.39%), Query Frame = 0 Query: 221 PEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECF--SIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQT-IEVENDL 346 P ++L+ ED+ S+ TY P++ED F C I + L +E K +S P+ V+ +P +LE NT+ + +L I +QF ++P PQ+ I W+ + NQ+ +E+E+ + Sbjct: 579 PPATVTLFHEGRSEDKDTLGDGSAVTYSPQIEDTGSAFSCSWEQIGPDGVLLYED-KVHSGPLEVIMVPIVLE---NTEVNFEFAGEEL-EIPVQFMAKPWPQEGDIIWS----LTSENQSMVEIEHKM 938
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592822812|gb|GAXK01131756.1| (TSA: Calanus finmarchicus comp160673_c1_seq1 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 3.450e-7 Identity = 33/105 (31.43%), Postives = 53/105 (50.48%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSI 146 +EL C S +QWCYW + + Q++ + D + SS C + I ++ G+WKCH+A TD +EV S +DE+ I + +A PA + S+ Sbjct: 219 LELFCESSSPYQWCYWAHGE--QEFRTVIGDEGLISPLSFEWVKSSTKCGVKI-----TSLEDEHAGEWKCHMADTDEEEV-ESIRDERFIEVFVAHPARVEISV 509 HSP 2 Score: 41.5874 bits (96), Expect = 9.409e-3 Identity = 37/129 (28.68%), Postives = 65/129 (50.39%), Query Frame = 0 Query: 221 PEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECF--SIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQT-IEVENDL 346 P ++L+ ED+ S+ TY P++ED F C I + L +E K +S P+ V+ +P +LE NT+ + +L I +QF ++P PQ+ I W+ + NQ+ +E+E+ + Sbjct: 579 PPATVTLFHEGRSEDKDTLGDGSAVTYSPQIEDTGSAFSCSWEQIGPDGVLLYED-KVHSGPLEVIMVPIVLE---NTEVNFEFAGEEL-EIPVQFMAKPWPQEGDIIWS----LTSENQSMVEIEHKM 938
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592907255|gb|GAXK01051120.1| (TSA: Calanus finmarchicus comp764378_c0_seq5 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 3.906e-7 Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLS----TSSESCKITIHLDGSEERAQ-KYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYN 149 ++L C + +QWCYW + + +YP T + E+ + SS C + + ERA ++ G WKCHLA TD S + +DE+ + +H+A PA + S+ + Sbjct: 446 LDLFCESSTPYQWCYWAH--NTSEYPTTSHKGGGEETEETVWGFQWRKSSTRCGLHV------ERASVEFRGAWKCHLADTDV-MASDNMRDEKWVRVHVATPAMVGISVTHT 757
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592907256|gb|GAXK01051119.1| (TSA: Calanus finmarchicus comp764378_c0_seq4 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 4.097e-7 Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 42 VELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLS----TSSESCKITIHLDGSEERAQ-KYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYN 149 ++L C + +QWCYW + + +YP T + E+ + SS C + + ERA ++ G WKCHLA TD S + +DE+ + +H+A PA + S+ + Sbjct: 498 LDLFCESSTPYQWCYWAH--NTSEYPTTSHKGGGEETEETVWGFQWRKSSTRCGLHV------ERASVEFRGAWKCHLADTDV-MASDNMRDEKWVRVHVATPAMVGISVTHT 809
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592787792|gb|GAXK01166776.1| (TSA: Calanus finmarchicus comp1193_c26_seq150 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 2.445e-3 Identity = 56/262 (21.37%), Postives = 101/262 (38.55%), Query Frame = 0 Query: 9 IFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSN----EDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKN 266 I FL+ + R +I D + +EL C +D + +C W ++ +N ED ++ + SC + G E+ + G++ C +AK + EV S +I + +A+PAG+ F D +V +K +L E +L V +E I N D D+++ + + L + +D+L+ ++ FT+ P ED K +C + Q N Sbjct: 46 ISLFLIFTV--AKVRAYEITGGSADTLIVAGERLELSCEIDGEYDFCSWSYSDDTWACLTNVNADGEELPCEDQERATITGTEGSCTL-----GLEDISLDDQGEFTCLVAKIEGTEVVKSV---HLINVEVAMPAGVEFG---------------------GDIADVEDKWMLLEDEEVTFSCHGNGGTPAAEVLGFVGSDEGI-NEDEDAAL---DETMLEELENGDDDRLLD-ITKEFTFTPSREDCGKYLKCSAKQMN 723
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592787847|gb|GAXK01166721.1| (TSA: Calanus finmarchicus comp1193_c26_seq95 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 2.323e-2 Identity = 35/160 (21.88%), Postives = 69/160 (43.12%), Query Frame = 0 Query: 9 IFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSN----EDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEI 164 I FL+ + R +I D + +EL C +D + +C W ++ +N ED ++ + SC + G E+ + G++ C +AK + EV S +I + +A+PAG+ F + + +D + +++ EE+ Sbjct: 177 ISLFLIFTV--AKVRAYEITGGSADTLIVAGERLELSCEIDGEYDFCSWSYSDDTWACLTNVNADGEELPCEDQERATITGTEGSCTL-----GLEDISLDDQGEFTCLVAKIEGTEVVKSV---HLINVEVAMPAGVEFGGDIAD-VEDKWMLLEDEEV 623
BLAST of EMLSAG00000006928 vs. L. salmonis peptides
Match: EMLSAP00000006928 (pep:novel supercontig:LSalAtl2s:LSalAtl2s393:107315:110460:-1 gene:EMLSAG00000006928 transcript:EMLSAT00000006928 description:"maker-LSalAtl2s393-augustus-gene-1.19") HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0 Identity = 726/726 (100.00%), Postives = 726/726 (100.00%), Query Frame = 0 Query: 1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE 726 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE Sbjct: 1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE 726 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006928 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
Pagesback to top
BLAST of EMLSAG00000006928 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000006928 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006928 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006928 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006928 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s393:107315..110460- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006928-689694 ID=EMLSAG00000006928-689694|Name=EMLSAG00000006928|organism=Lepeophtheirus salmonis|type=gene|length=3146bp|location=Sequence derived from alignment at LSalAtl2s393:107315..110460- (Lepeophtheirus salmonis)back to top Add to Basket
|