EMLSAG00000006966, EMLSAG00000006966-689732 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006966
Unique NameEMLSAG00000006966-689732
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006966 vs. L. salmonis peptides
Match: EMLSAP00000006966 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3965:4049:4449:-1 gene:EMLSAG00000006966 transcript:EMLSAT00000006966 description:"maker-LSalAtl2s3965-snap-gene-0.3")

HSP 1 Score: 172.555 bits (436), Expect = 7.617e-57
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MNTRMRIRSSKNKLAFVQIGFSAAEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSGLGNQVKSLVHVQFIKLRRITLVMLIKVLYQN 88
            MNTRMRIRSSKNKLAFVQIGFSAAEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSGLGNQVKSLVHVQFIKLRRITLVMLIKVLYQN
Sbjct:    1 MNTRMRIRSSKNKLAFVQIGFSAAEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSGLGNQVKSLVHVQFIKLRRITLVMLIKVLYQN 88
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BLAST of EMLSAG00000006966 vs. L. salmonis peptides
Match: EMLSAP00000000301 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402:4048:-1 gene:EMLSAG00000000301 transcript:EMLSAT00000000301 description:"snap_masked-LSalAtl2s1044-processed-gene-0.17")

HSP 1 Score: 63.5438 bits (153), Expect = 4.687e-14
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:   12 NKLAFVQIGF----SAAEDSSQLIHQQMNESDQSFXIDSSIISTGLQ 54
            NK    Q+G      AAEDSSQLIHQQMN+SDQSF IDSSIISTGLQ
Sbjct:   49 NKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQ 95
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BLAST of EMLSAG00000006966 vs. L. salmonis peptides
Match: EMLSAP00000006390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:207605:212969:1 gene:EMLSAG00000006390 transcript:EMLSAT00000006390 description:"maker-LSalAtl2s350-augustus-gene-2.6")

HSP 1 Score: 60.8474 bits (146), Expect = 5.084e-12
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0 
Query:   12 NKLAFVQIGFSA----AEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSG 57
            NK    Q+G  +    A+DSSQL+HQQMNESDQSF IDSSI+ T LQ+SG
Sbjct: 1026 NKELQKQVGICSNRDTADDSSQLVHQQMNESDQSFKIDSSILPTELQASG 1075
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BLAST of EMLSAG00000006966 vs. L. salmonis peptides
Match: EMLSAP00000006410 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:759416:762862:1 gene:EMLSAG00000006410 transcript:EMLSAT00000006410 description:"maker-LSalAtl2s350-augustus-gene-6.33")

HSP 1 Score: 55.4546 bits (132), Expect = 2.235e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0 
Query:   24 AEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSGLGNQVKSLV 66
            A+DSSQL++QQMN+SDQSF IDSSI S GLQ SG  N++KS V
Sbjct:   71 ADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISG-KNKMKSKV 112
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006966 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006966 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006966 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000069667.617e-57100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s3965:4049... [more]
EMLSAP000000003014.687e-1472.34pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402... [more]
EMLSAP000000063905.084e-1262.00pep:novel supercontig:LSalAtl2s:LSalAtl2s350:20760... [more]
EMLSAP000000064102.235e-1169.77pep:novel supercontig:LSalAtl2s:LSalAtl2s350:75941... [more]
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BLAST of EMLSAG00000006966 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006966 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006966 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006966 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s3965supercontigLSalAtl2s3965:4049..4449 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s3965-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006966 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006966EMLSAT00000006966-702813Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s3965:4049..4449-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006966-689732 ID=EMLSAG00000006966-689732|Name=EMLSAG00000006966|organism=Lepeophtheirus salmonis|type=gene|length=401bp|location=Sequence derived from alignment at LSalAtl2s3965:4049..4449- (Lepeophtheirus salmonis)
ATGAATACAAGGATGCGAATAAGGAGCTCCAAAAACAAGTTGGCATTTGT
TCAAATAGGATTTTCGGCTGCAGAGGATTCTAGTCAATTAATTCATCAAC
AAATGAACGAATCAGATCAGAGCTTTNAAATCGACTCAAGCATCATATCA
ACTGGATTGCAAAGCTCTGGTAAAAAGAAAAGAAGGGGTAAAGTTAGAAA
TACCCAAAATAATAGTACAAAACCCAACAATAGCTCCTCAATTTTTTTTA
AATGAAAGCAATGTTGAAAATGAAGTAAATGATAGTAAGAGTTATCTATG
TAGGTCTCGGAAATCAAGTAAAGTCACTCGTTCACGTCCAGTTCATAAAA
CTAAGAAGAATCACGTTAGTTATGTTGATAAAAGTTCTATATCAGAACTA
A
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