EMLSAG00000007200, EMLSAG00000007200-689966 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007200
Unique NameEMLSAG00000007200-689966
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007200 vs. C. finmarchicus
Match: gi|592775133|gb|GAXK01179435.1| (TSA: Calanus finmarchicus comp290197_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 4.631e-4
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0 
Query:   14 NSSNDEAKVFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHD 66
            N S+   +VFLT++  A V   G  +KRRL LNW +P +    DD++GLF  D
Sbjct: 1338 NFSSPGLQVFLTVNSKARVFWDGTVEKRRLELNWVTPPDRQ-DDDYVGLFRDD 1493
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BLAST of EMLSAG00000007200 vs. C. finmarchicus
Match: gi|592775134|gb|GAXK01179434.1| (TSA: Calanus finmarchicus comp290197_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 1.486e-3
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 0 
Query:   14 NSSNDEAKVFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHDRIGNETS 73
            N S    +VFLT++ LA V   G  +KRRL LNW SP++     D++ L+  D + N  +
Sbjct: 1317 NFSAPSLEVFLTINSLARVLWDGTFEKRRLELNWVSPQD-REDGDYVALYHDDPLHNNQT 1493
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BLAST of EMLSAG00000007200 vs. C. finmarchicus
Match: gi|592854057|gb|GAXK01103487.1| (TSA: Calanus finmarchicus comp60044_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.748e+0
Identity = 12/35 (34.29%), Postives = 22/35 (62.86%), Query Frame = 0 
Query:    4 VTPLDTSCYRNSSNDEAKVFLTLSPLASVSLLGYT 38
            +TP +++     SN  +  F+ +SP++S+ LLGY 
Sbjct: 1119 LTPFNSAFSMACSNIRSSFFINISPISSLILLGYV 1223
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BLAST of EMLSAG00000007200 vs. L. salmonis peptides
Match: EMLSAP00000007200 (pep:novel supercontig:LSalAtl2s:LSalAtl2s404:397564:398489:-1 gene:EMLSAG00000007200 transcript:EMLSAT00000007200 description:"maker-LSalAtl2s404-snap-gene-4.41")

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MTLVTPLDTSCYRNSSNDEAKVFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHDRIGNETSRK 75
            MTLVTPLDTSCYRNSSNDEAKVFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHDRIGNETSRK
Sbjct:    1 MTLVTPLDTSCYRNSSNDEAKVFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHDRIGNETSRK 75
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BLAST of EMLSAG00000007200 vs. Select Arthropod Genomes
Match: EFX90339.1 (hypothetical protein DAPPUDRAFT_220083 [Daphnia pulex])

HSP 1 Score: 48.521 bits (114), Expect = 1.438e-7
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 0 
Query:   18 DEAKVFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHDRIGNET 72
            +  +VFLTLSPLA     G + +R++ LNW     +    DWIGL+ HD   N T
Sbjct:   29 ESPRVFLTLSPLAKSLPGGNSQQRQIELNWHGNGAVSQPGDWIGLYEHDPTNNPT 83
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BLAST of EMLSAG00000007200 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold275_size226830-snap-gene-1.27 (protein:Tk00641 transcript:maker-scaffold275_size226830-snap-gene-1.27-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_220083")

HSP 1 Score: 46.9802 bits (110), Expect = 3.588e-8
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0 
Query:   22 VFLTLSPLASVSLLGYTDKRRLVLNWKSPKNIMITDDWIGLFSHD 66
            VFLT+S LAS  + G +D R++ LNW +P+    TDDW+GLF  D
Sbjct:   59 VFLTVSSLASSGMFGGSDSRKIELNW-TPRPGASTDDWVGLFRTD 102
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007200 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007200 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592775133|gb|GAXK01179435.1|4.631e-443.40TSA: Calanus finmarchicus comp290197_c1_seq2 trans... [more]
gi|592775134|gb|GAXK01179434.1|1.486e-338.33TSA: Calanus finmarchicus comp290197_c1_seq1 trans... [more]
gi|592854057|gb|GAXK01103487.1|2.748e+034.29TSA: Calanus finmarchicus comp60044_c2_seq4 transc... [more]
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BLAST of EMLSAG00000007200 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000072002.614e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s404:39756... [more]
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BLAST of EMLSAG00000007200 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007200 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EFX90339.11.438e-741.82hypothetical protein DAPPUDRAFT_220083 [Daphnia pu... [more]
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BLAST of EMLSAG00000007200 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007200 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold275_size226830-snap-gene-1.273.588e-851.11protein:Tk00641 transcript:maker-scaffold275_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s404supercontigLSalAtl2s404:397564..398489 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s404-snap-gene-4.41
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007200 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007200EMLSAT00000007200-703047Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s404:397564..398489-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007200-689966 ID=EMLSAG00000007200-689966|Name=EMLSAG00000007200|organism=Lepeophtheirus salmonis|type=gene|length=926bp|location=Sequence derived from alignment at LSalAtl2s404:397564..398489- (Lepeophtheirus salmonis)
ATGACTCTGGTTACGCCGTTAGGTATATTATGCTATAAAATGTATATATA
CGACATTCTCAAATTTAACATGGATTTTTAATGACTTAATAAGAGAGTAG
TTTGATTACAAGATGAAACACTTCTATATTATAGAAGTATTGTTTTTTTT
TATATATTTACTGACTTCAAGTCGAGGCATCCGTGAAATAAATTGTAAGT
ACCAAATTATTAATAAAGCACATTTATTCTGAGAAATAAACAATTAGAAA
TAATTAAATTATCCAATAATAAAAATTTATAAGCTAGAGAAAACTTTTTA
AACTATCTAAAGATAACAAAGAAACTGACATAAAAAATAAGCGTTTTCAG
TTGTGGTTAGAATCTTATAATGTATTATGAAACAATTATAGTGAGGGGTA
GATATTAATTATTTTACTTAGGTGTGTTGTTCAATACTGAGAGTGTATTC
AAAAAGGATACTAATTAGTATCTATGTCACTCGCAAAATATTAACGAGAC
GAGTTGAAGAATTAATTAATTATAGAACAAAATGTGGCCCTTTCATCTGA
GTAGTATTGGAAATTTATATGTATATAAAAAATCTGATTCTTGAATAAAA
AATTTGGTCCATGAGGAGGGAGGGGAGAATTAATTGATACTACAATTAGA
ATTACTTATCAACAACACTTAAAATCAATTAATAACATAATAGTAACAAT
GGCTCATTAAAATTTGACAGACACATCCTGCTATAGGAATAGTTCCAATG
ATGAAGCAAAAGTATTTTTAACGTTAAGTCCATTGGCATCTGTATCTTTG
CTAGGATACACAGACAAGAGGCGATTGGTGCTAAACTGGAAGTCTCCTAA
GAACATAATGATTACAGATGACTGGATTGGACTATTCTCTCATGATCGGA
TAGGGAATGAGACATCACGKAAATGA
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